Wall clock time and date at job start Tue Mar 31 2020 21:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46706 * 2 1 4 4 C 1.50702 * 109.46814 * 119.99853 * 2 1 3 5 5 O 1.21279 * 119.99662 * 120.00125 * 4 2 1 6 6 N 1.34774 * 119.99938 * 299.99770 * 4 2 1 7 7 C 1.46507 * 119.99516 * 180.02562 * 6 4 2 8 8 H 1.08998 * 109.47050 * 324.99981 * 7 6 4 9 9 C 1.53000 * 109.47399 * 85.00274 * 7 6 4 10 10 C 1.53001 * 109.46858 * 205.00269 * 7 6 4 11 11 C 1.53942 * 113.74218 * 161.82332 * 10 7 6 12 12 N 1.47818 * 86.03565 * 222.08051 * 11 10 7 13 13 C 1.36934 * 134.45755 * 204.64402 * 12 11 10 14 14 H 1.07996 * 120.00017 * 179.86989 * 13 12 11 15 15 C 1.38811 * 120.00124 * 359.86613 * 13 12 11 16 16 N 1.31626 * 119.99681 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00288 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47305 * 89.99546 * 17 15 13 19 19 H 1.48494 * 109.47151 * 210.00165 * 17 15 13 20 20 H 1.48499 * 109.46813 * 329.99779 * 17 15 13 21 21 C 1.47588 * 91.05015 * 24.54828 * 12 11 10 22 22 C 1.50694 * 109.46882 * 239.99893 * 2 1 3 23 23 C 1.38256 * 119.96741 * 300.02199 * 22 2 1 24 24 C 1.38213 * 120.07044 * 180.02562 * 23 22 2 25 25 C 1.38405 * 120.00123 * 359.97438 * 24 23 22 26 26 F 1.35104 * 120.03429 * 180.02562 * 25 24 23 27 27 C 1.38650 * 119.93017 * 359.73185 * 25 24 23 28 28 F 1.35098 * 120.03760 * 180.29978 * 27 25 24 29 29 C 1.38216 * 119.96001 * 120.00310 * 22 2 1 30 30 H 1.09001 * 109.47180 * 299.99882 * 1 2 3 31 31 H 1.08998 * 109.47323 * 60.00059 * 1 2 3 32 32 H 1.09000 * 109.46976 * 180.02562 * 1 2 3 33 33 H 0.96991 * 120.00571 * 0.02562 * 6 4 2 34 34 H 1.08998 * 109.46978 * 180.02562 * 9 7 6 35 35 H 1.09002 * 109.46623 * 300.06373 * 9 7 6 36 36 H 1.08995 * 109.47156 * 60.06065 * 9 7 6 37 37 H 1.09000 * 112.94222 * 293.41259 * 10 7 6 38 38 H 1.08998 * 113.76931 * 336.33872 * 11 10 7 39 39 H 1.09001 * 113.77069 * 107.74260 * 11 10 7 40 40 H 0.97005 * 119.99665 * 179.97438 * 16 15 13 41 41 H 1.08997 * 113.76747 * 221.15617 * 21 12 11 42 42 H 1.08999 * 113.86762 * 89.76944 * 21 12 11 43 43 H 1.08000 * 119.96000 * 359.97436 * 23 22 2 44 44 H 1.08003 * 119.99573 * 179.97438 * 24 23 22 45 45 H 1.07997 * 120.00310 * 359.97153 * 29 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1192 6 7 1.7067 -0.2499 2.4546 7 6 2.1955 -0.9402 3.6508 8 1 2.2325 -2.0130 3.4615 9 6 3.5980 -0.4343 3.9944 10 6 1.2515 -0.6613 4.8221 11 6 1.3973 -1.6577 5.9865 12 7 -0.0796 -1.6441 6.0479 13 6 -1.0011 -1.9007 7.0276 14 1 -2.0560 -1.8158 6.8124 15 6 -0.5795 -2.2701 8.2975 16 7 0.7062 -2.3741 8.5597 17 14 -1.8366 -2.6209 9.6339 18 1 -2.1998 -4.0606 9.6063 19 1 -1.2583 -2.2816 10.9589 20 1 -3.0511 -1.7994 9.3989 21 6 -0.1619 -1.2407 4.6306 22 6 2.0323 -0.7104 -1.2304 23 6 1.6975 -2.0339 -1.4487 24 6 2.1574 -2.6877 -2.5762 25 6 2.9536 -2.0173 -3.4885 26 9 3.4031 -2.6556 -4.5912 27 6 3.2844 -0.6883 -3.2727 28 9 4.0564 -0.0301 -4.1648 29 6 2.8269 -0.0380 -2.1397 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.1489 0.5385 2.5436 34 1 3.9617 -0.9483 4.8841 35 1 4.2702 -0.6320 3.1595 36 1 3.5608 0.6383 4.1848 37 1 1.2591 0.3830 5.1345 38 1 1.8158 -2.6199 5.6915 39 1 1.8787 -1.2353 6.8685 40 1 1.0009 -2.6319 9.4473 41 1 -0.9228 -0.4860 4.4321 42 1 -0.2026 -2.0789 3.9351 43 1 1.0766 -2.5577 -0.7370 44 1 1.8955 -3.7218 -2.7454 45 1 3.0872 0.9961 -1.9684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675362894.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:55 Heat of formation + Delta-G solvation = -74.573940 kcal Electronic energy + Delta-G solvation = -28801.217317 eV Core-core repulsion = 24455.412158 eV Total energy + Delta-G solvation = -4345.805159 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -50.51677 -49.60216 -41.43944 -40.15962 -39.23196 -36.11149 -35.07406 -34.07445 -31.97128 -31.69043 -29.87459 -29.27267 -26.61548 -25.90911 -25.44429 -24.28853 -23.65784 -22.30301 -21.23498 -20.48456 -19.00757 -18.77278 -18.46471 -18.09718 -17.44270 -17.31233 -17.14228 -16.80899 -16.28401 -16.03055 -15.79958 -15.54623 -15.46587 -15.35120 -14.97213 -14.77445 -14.70743 -14.10181 -13.99378 -13.77608 -13.44208 -13.28179 -13.17258 -13.04573 -12.96543 -12.89245 -12.65910 -12.56718 -12.44673 -12.31060 -12.00507 -11.94515 -11.76845 -11.52705 -11.17907 -10.85030 -10.66806 -10.06080 -9.93943 -9.64941 -8.89864 -7.89394 -5.22393 -0.14120 0.02189 1.46257 1.48057 1.56574 1.74574 2.11191 2.48110 2.50734 2.77998 3.26701 3.31423 3.41809 3.42632 3.57054 3.72875 3.93066 4.02588 4.07252 4.12059 4.23444 4.31051 4.33647 4.50253 4.62197 4.71304 4.79558 4.82051 4.84689 4.89228 4.90652 4.95011 4.99510 5.00776 5.06623 5.15726 5.27987 5.33728 5.34963 5.42691 5.56457 5.62359 5.70115 5.73110 5.96224 6.70475 6.93577 7.38628 7.62837 8.58529 9.27659 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.026328 B = 0.002070 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.252506 B =13520.294700 C =13729.103479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.062 4.062 3 H 0.142 0.858 4 C 0.515 3.485 5 O -0.577 6.577 6 N -0.704 5.704 7 C 0.164 3.836 8 H 0.060 0.940 9 C -0.152 4.152 10 C -0.108 4.108 11 C 0.168 3.832 12 N -0.645 5.645 13 C -0.233 4.233 14 H 0.085 0.915 15 C -0.070 4.070 16 N -0.955 5.955 17 Si 0.977 3.023 18 H -0.290 1.290 19 H -0.295 1.295 20 H -0.265 1.265 21 C 0.130 3.870 22 C -0.049 4.049 23 C -0.071 4.071 24 C -0.127 4.127 25 C 0.046 3.954 26 F -0.142 7.142 27 C 0.048 3.952 28 F -0.139 7.139 29 C -0.111 4.111 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.055 0.945 33 H 0.415 0.585 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.105 0.895 38 H 0.009 0.991 39 H 0.043 0.957 40 H 0.248 0.752 41 H 0.065 0.935 42 H 0.034 0.966 43 H 0.140 0.860 44 H 0.160 0.840 45 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.697 9.519 -23.194 25.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.083 4.083 3 H 0.160 0.840 4 C 0.302 3.698 5 O -0.456 6.456 6 N -0.356 5.356 7 C 0.058 3.942 8 H 0.078 0.922 9 C -0.210 4.210 10 C -0.127 4.127 11 C 0.042 3.958 12 N -0.372 5.372 13 C -0.361 4.361 14 H 0.102 0.898 15 C -0.263 4.263 16 N -0.604 5.604 17 Si 0.805 3.195 18 H -0.217 1.217 19 H -0.221 1.221 20 H -0.190 1.190 21 C 0.005 3.995 22 C -0.050 4.050 23 C -0.089 4.089 24 C -0.145 4.145 25 C 0.026 3.974 26 F -0.121 7.121 27 C 0.028 3.972 28 F -0.118 7.118 29 C -0.129 4.129 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.074 0.926 33 H 0.253 0.747 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.123 0.877 38 H 0.027 0.973 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.083 0.917 42 H 0.052 0.948 43 H 0.158 0.842 44 H 0.178 0.822 45 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 2.101 8.752 -23.036 24.732 hybrid contribution -0.188 -0.676 0.679 0.977 sum 1.913 8.076 -22.357 23.848 Atomic orbital electron populations 1.21878 0.89796 1.03435 1.04918 1.20364 0.99234 1.01185 0.87527 0.84005 1.20920 0.79505 0.84137 0.85229 1.90732 1.39594 1.28094 1.87169 1.45883 1.53126 1.32162 1.04428 1.20684 0.93377 0.96543 0.83579 0.92213 1.22038 0.95485 1.02288 1.01224 1.23434 0.94590 1.00396 0.94317 1.22137 0.84963 0.94021 0.94648 1.46447 1.03101 1.80658 1.06980 1.19436 0.88646 1.38476 0.89561 0.89773 1.25632 0.98028 1.02749 0.99880 1.70005 1.14289 1.55117 1.20972 0.85095 0.78368 0.77724 0.78267 1.21719 1.22111 1.18986 1.22677 0.95624 0.96121 0.85046 1.19435 0.96395 0.94034 0.95086 1.21068 0.98273 0.94116 0.95433 1.21242 0.97636 1.02007 0.93644 1.17964 1.01918 0.90475 0.87002 1.91489 1.87810 1.81691 1.51068 1.17810 0.98101 0.89857 0.91462 1.91497 1.72940 1.80549 1.66821 1.21160 0.97739 1.02412 0.91612 0.89662 0.89326 0.92559 0.74742 0.92395 0.92985 0.90700 0.87666 0.97337 0.93813 0.94330 0.91712 0.94835 0.84209 0.82239 0.80997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 8.90 71.98 0.64 -0.57 16 2 C -0.06 -0.73 2.90 -12.28 -0.04 -0.77 16 3 H 0.14 0.79 7.87 -2.39 -0.02 0.78 16 4 C 0.52 10.40 6.99 87.66 0.61 11.01 16 5 O -0.58 -17.00 14.77 -3.03 -0.04 -17.04 16 6 N -0.70 -13.30 4.84 -442.52 -2.14 -15.44 16 7 C 0.16 4.38 2.29 44.99 0.10 4.48 16 8 H 0.06 1.98 7.48 -2.39 -0.02 1.96 16 9 C -0.15 -3.78 9.44 71.98 0.68 -3.10 16 10 C -0.11 -3.43 3.35 -10.13 -0.03 -3.47 16 11 C 0.17 7.70 6.98 86.44 0.60 8.30 16 12 N -0.65 -32.04 3.70 -716.10 -2.65 -34.70 16 13 C -0.23 -12.83 10.70 84.03 0.90 -11.93 16 14 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 15 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 16 N -0.95 -57.39 11.39 21.65 0.25 -57.15 16 17 Si 0.98 45.25 29.55 68.60 2.03 47.28 16 18 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 19 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 20 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 21 C 0.13 4.69 8.38 86.48 0.72 5.41 16 22 C -0.05 -0.76 4.40 -19.87 -0.09 -0.85 16 23 C -0.07 -1.25 7.92 22.27 0.18 -1.07 16 24 C -0.13 -2.28 10.02 22.30 0.22 -2.06 16 25 C 0.05 0.97 7.31 22.41 0.16 1.14 16 26 F -0.14 -3.30 17.18 44.97 0.77 -2.53 16 27 C 0.05 0.95 7.31 22.41 0.16 1.11 16 28 F -0.14 -3.04 17.18 44.97 0.77 -2.26 16 29 C -0.11 -1.66 9.65 22.31 0.22 -1.45 16 30 H 0.08 0.53 7.56 -2.39 -0.02 0.51 16 31 H 0.09 0.49 8.14 -2.39 -0.02 0.48 16 32 H 0.06 0.63 7.39 -2.39 -0.02 0.61 16 33 H 0.42 5.21 8.02 -92.72 -0.74 4.47 16 34 H 0.06 1.59 8.09 -2.39 -0.02 1.57 16 35 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 38 H 0.01 0.43 8.03 -2.39 -0.02 0.41 16 39 H 0.04 2.25 7.17 -2.39 -0.02 2.24 16 40 H 0.25 14.51 8.31 -92.70 -0.77 13.73 16 41 H 0.06 2.04 8.14 -2.39 -0.02 2.03 16 42 H 0.03 1.22 8.10 -2.39 -0.02 1.21 16 43 H 0.14 2.43 7.51 -2.91 -0.02 2.41 16 44 H 0.16 2.27 8.06 -2.91 -0.02 2.24 16 45 H 0.17 1.55 7.94 -2.91 -0.02 1.52 16 Total: -1.00 -73.92 382.04 4.77 -69.15 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: 0.27 Total: 10.01 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: 5.52 Total: 2.68 kcal Atomic # 7 Polarization: -102.74 SS G_CDS: -4.55 Total: -107.28 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.04 Total: -17.04 kcal Atomic # 9 Polarization: -6.34 SS G_CDS: 1.55 Total: -4.80 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -73.92 4.77 -69.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675362894.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.421 kcal (2) G-P(sol) polarization free energy of solvation -73.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds