Wall clock time and date at job start Tue Mar 31 2020 21:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47485 * 2 1 4 4 C 1.50700 * 109.47148 * 239.99850 * 2 1 3 5 5 O 1.21277 * 120.00563 * 240.00220 * 4 2 1 6 6 N 1.34782 * 119.99745 * 60.00345 * 4 2 1 7 7 C 1.46502 * 119.99822 * 179.97438 * 6 4 2 8 8 H 1.08990 * 109.47277 * 324.99671 * 7 6 4 9 9 C 1.53005 * 109.47086 * 85.00338 * 7 6 4 10 10 C 1.53003 * 109.46674 * 204.99908 * 7 6 4 11 11 C 1.53949 * 113.74014 * 162.20061 * 10 7 6 12 12 N 1.47812 * 86.03317 * 222.08050 * 11 10 7 13 13 C 1.36936 * 134.45309 * 204.64049 * 12 11 10 14 14 H 1.07995 * 119.99799 * 182.59222 * 13 12 11 15 15 C 1.38811 * 120.00138 * 2.58711 * 13 12 11 16 16 N 1.31616 * 119.99924 * 353.41345 * 15 13 12 17 17 Si 1.86805 * 120.00052 * 173.41583 * 15 13 12 18 18 H 1.48507 * 109.47018 * 94.97142 * 17 15 13 19 19 H 1.48492 * 109.47011 * 214.97255 * 17 15 13 20 20 H 1.48497 * 109.47015 * 334.97166 * 17 15 13 21 21 C 1.47574 * 91.05355 * 24.54950 * 12 11 10 22 22 C 1.50707 * 109.47312 * 120.00520 * 2 1 3 23 23 C 1.38258 * 119.96082 * 240.00228 * 22 2 1 24 24 C 1.38210 * 120.06434 * 179.97438 * 23 22 2 25 25 C 1.38411 * 120.00632 * 359.97438 * 24 23 22 26 26 F 1.35099 * 120.03740 * 180.02562 * 25 24 23 27 27 C 1.38648 * 119.92776 * 0.02562 * 25 24 23 28 28 F 1.35094 * 120.03924 * 179.97438 * 27 25 24 29 29 C 1.38212 * 119.96472 * 59.72306 * 22 2 1 30 30 H 1.08996 * 109.46880 * 60.00078 * 1 2 3 31 31 H 1.09000 * 109.46983 * 299.99868 * 1 2 3 32 32 H 1.09000 * 109.46849 * 179.97438 * 1 2 3 33 33 H 0.96999 * 119.99824 * 0.02562 * 6 4 2 34 34 H 1.09002 * 109.46292 * 304.48273 * 9 7 6 35 35 H 1.08996 * 109.47421 * 64.48282 * 9 7 6 36 36 H 1.08996 * 109.46699 * 184.48889 * 9 7 6 37 37 H 1.09004 * 112.94497 * 293.79005 * 10 7 6 38 38 H 1.09004 * 113.76687 * 336.34755 * 11 10 7 39 39 H 1.08996 * 113.76735 * 107.74225 * 11 10 7 40 40 H 0.97006 * 119.99913 * 180.02562 * 16 15 13 41 41 H 1.08997 * 113.77194 * 221.15144 * 21 12 11 42 42 H 1.09008 * 113.87313 * 89.76037 * 21 12 11 43 43 H 1.07994 * 119.96634 * 359.96865 * 23 22 2 44 44 H 1.08008 * 119.99508 * 179.97438 * 24 23 22 45 45 H 1.07996 * 119.99957 * 359.97438 * 29 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1193 6 7 1.7068 -0.2499 -2.4546 7 6 2.1956 -0.9402 -3.6508 8 1 3.1948 -1.3320 -3.4613 9 6 1.2519 -2.0944 -3.9949 10 6 2.2468 0.0432 -4.8218 11 6 3.1311 -0.4297 -5.9900 12 7 3.6162 0.9651 -6.0526 13 6 4.1649 1.7465 -7.0342 14 1 4.4822 2.7537 -6.8083 15 6 4.3134 1.2438 -8.3196 16 7 4.0487 -0.0217 -8.5659 17 14 4.8888 2.3635 -9.6997 18 1 6.3596 2.2353 -9.8605 19 1 4.2167 1.9746 -10.9654 20 1 4.5477 3.7707 -9.3702 21 6 3.2699 1.1780 -4.6340 22 6 2.0324 -0.7105 1.2304 23 6 2.8272 -0.0379 2.1401 24 6 3.2887 -0.6873 3.2694 25 6 2.9549 -2.0121 3.4911 26 9 3.4052 -2.6474 4.5952 27 6 2.1579 -2.6866 2.5789 28 9 1.8311 -3.9799 2.7928 29 6 1.6934 -2.0321 1.4512 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.1495 0.5390 -2.5435 34 1 1.1533 -2.7527 -3.1317 35 1 0.2731 -1.6962 -4.2619 36 1 1.6573 -2.6565 -4.8361 37 1 1.2600 0.3885 -5.1302 38 1 3.8968 -1.1486 -5.6983 39 1 2.5676 -0.7400 -6.8698 40 1 4.1528 -0.3731 -9.4641 41 1 2.8170 2.1489 -4.4332 42 1 4.0754 0.9331 -3.9416 43 1 3.0878 0.9959 1.9678 44 1 3.9099 -0.1609 3.9791 45 1 1.0684 -2.5549 0.7424 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675362895.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:59 Heat of formation + Delta-G solvation = -54.894230 kcal Electronic energy + Delta-G solvation = -28838.852500 eV Core-core repulsion = 24493.900717 eV Total energy + Delta-G solvation = -4344.951783 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -49.67080 -48.74649 -40.55470 -39.06185 -37.96433 -34.85247 -34.36595 -32.17122 -31.13004 -30.57714 -29.22685 -27.50770 -25.31883 -24.74027 -24.07905 -23.49187 -22.54481 -21.08318 -20.18828 -19.12128 -18.18772 -17.67206 -17.33285 -16.84098 -16.65161 -16.43944 -16.07051 -15.21164 -15.15993 -14.93489 -14.78196 -14.59786 -14.31560 -14.10544 -13.99726 -13.72577 -13.55998 -13.20266 -12.90861 -12.75865 -12.42412 -12.25432 -12.15693 -11.92696 -11.63555 -11.61043 -11.46920 -11.39762 -11.27085 -10.92765 -10.68103 -10.39491 -10.07807 -9.84420 -9.64273 -9.46033 -9.31547 -8.90510 -8.90150 -8.75713 -6.90813 -5.79586 -3.10614 0.59739 0.73928 2.62656 2.93090 3.33038 3.37431 3.42385 3.44651 3.51705 4.01919 4.12428 4.23164 4.43175 4.58016 4.65623 4.74344 4.83052 4.92878 5.08664 5.14494 5.25278 5.36937 5.38121 5.45633 5.51410 5.54986 5.57739 5.62316 5.69182 5.72189 5.79241 5.96924 6.03561 6.04884 6.24194 6.32142 6.41134 6.45301 6.55436 6.59719 6.77099 7.19524 7.34438 7.52691 7.57607 7.95909 8.25602 9.02378 9.69011 10.57991 11.38068 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023570 B = 0.002111 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.686513 B =13260.452816 C =13480.543287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.074 4.074 3 H 0.112 0.888 4 C 0.515 3.485 5 O -0.534 6.534 6 N -0.715 5.715 7 C 0.150 3.850 8 H 0.087 0.913 9 C -0.157 4.157 10 C -0.146 4.146 11 C 0.175 3.825 12 N -0.612 5.612 13 C -0.224 4.224 14 H 0.079 0.921 15 C -0.008 4.008 16 N -0.920 5.920 17 Si 0.911 3.089 18 H -0.289 1.289 19 H -0.289 1.289 20 H -0.280 1.280 21 C 0.126 3.874 22 C -0.045 4.045 23 C -0.092 4.092 24 C -0.127 4.127 25 C 0.064 3.936 26 F -0.131 7.131 27 C 0.067 3.933 28 F -0.130 7.130 29 C -0.090 4.090 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.399 0.601 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.028 0.972 39 H 0.073 0.927 40 H 0.254 0.746 41 H 0.040 0.960 42 H 0.031 0.969 43 H 0.141 0.859 44 H 0.146 0.854 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.602 -0.125 23.118 25.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.095 4.095 3 H 0.130 0.870 4 C 0.299 3.701 5 O -0.410 6.410 6 N -0.366 5.366 7 C 0.046 3.954 8 H 0.105 0.895 9 C -0.215 4.215 10 C -0.166 4.166 11 C 0.050 3.950 12 N -0.338 5.338 13 C -0.352 4.352 14 H 0.097 0.903 15 C -0.204 4.204 16 N -0.568 5.568 17 Si 0.741 3.259 18 H -0.217 1.217 19 H -0.216 1.216 20 H -0.206 1.206 21 C 0.000 4.000 22 C -0.046 4.046 23 C -0.110 4.110 24 C -0.146 4.146 25 C 0.044 3.956 26 F -0.110 7.110 27 C 0.047 3.953 28 F -0.108 7.108 29 C -0.109 4.109 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.232 0.768 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.046 0.954 39 H 0.091 0.909 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.049 0.951 43 H 0.159 0.841 44 H 0.164 0.836 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.973 -0.845 22.888 24.598 hybrid contribution 0.343 0.510 -0.611 0.867 sum -8.630 -0.335 22.276 23.892 Atomic orbital electron populations 1.21825 0.91559 1.03310 1.03331 1.20353 0.98036 1.00613 0.90537 0.87003 1.20303 0.80477 0.84801 0.84479 1.90743 1.37511 1.26175 1.86586 1.46115 1.53201 1.31775 1.05475 1.21125 0.98435 0.92562 0.83301 0.89475 1.22099 0.99536 0.98176 1.01702 1.23840 0.99926 0.96979 0.95893 1.22232 0.92079 0.87434 0.93298 1.46042 1.73453 1.09573 1.04771 1.19019 1.33969 0.94694 0.87506 0.90322 1.24784 1.01952 0.96268 0.97402 1.69823 1.54576 1.12071 1.20288 0.86123 0.78128 0.79706 0.81936 1.21675 1.21569 1.20580 1.22521 0.93778 0.95650 0.88077 1.19229 0.97082 0.93176 0.95111 1.20972 0.96441 1.00669 0.92933 1.21010 1.01841 0.92132 0.99622 1.17709 1.00219 0.92170 0.85529 1.91521 1.87405 1.81931 1.50137 1.17626 1.01137 0.79894 0.96670 1.91528 1.91007 1.33545 1.94741 1.20849 1.00356 0.94655 0.95069 0.91098 0.91032 0.91725 0.76753 0.92904 0.92724 0.91177 0.89340 0.95416 0.90866 0.93614 0.94148 0.95112 0.84108 0.83627 0.83885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 8.90 37.16 0.33 -0.47 16 2 C -0.07 -0.57 2.90 -92.92 -0.27 -0.84 16 3 H 0.11 0.62 7.87 -51.93 -0.41 0.22 16 4 C 0.51 5.98 6.99 -10.98 -0.08 5.90 16 5 O -0.53 -8.44 14.79 5.56 0.08 -8.36 16 6 N -0.72 -7.95 4.85 -53.80 -0.26 -8.21 16 7 C 0.15 2.15 2.29 -67.92 -0.16 1.99 16 8 H 0.09 1.49 7.49 -51.93 -0.39 1.10 16 9 C -0.16 -2.07 9.43 37.16 0.35 -1.72 16 10 C -0.15 -2.48 3.35 -89.69 -0.30 -2.78 16 11 C 0.18 3.97 7.03 -2.84 -0.02 3.95 16 12 N -0.61 -15.40 3.70 -177.72 -0.66 -16.06 16 13 C -0.22 -6.24 10.69 -15.06 -0.16 -6.40 16 14 H 0.08 2.11 7.84 -52.49 -0.41 1.70 16 15 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 16 N -0.92 -27.11 11.43 55.49 0.63 -26.47 16 17 Si 0.91 21.95 29.56 -169.99 -5.02 16.92 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 C 0.13 2.43 8.38 -2.97 -0.02 2.41 16 22 C -0.05 -0.41 4.39 -104.62 -0.46 -0.87 16 23 C -0.09 -0.70 9.67 -39.58 -0.38 -1.08 16 24 C -0.13 -1.04 10.02 -39.53 -0.40 -1.43 16 25 C 0.06 0.68 7.31 -39.37 -0.29 0.39 16 26 F -0.13 -1.51 17.18 2.25 0.04 -1.47 16 27 C 0.07 0.77 7.31 -39.36 -0.29 0.48 16 28 F -0.13 -1.64 17.18 2.25 0.04 -1.60 16 29 C -0.09 -0.95 7.91 -39.53 -0.31 -1.26 16 30 H 0.07 0.33 7.56 -51.93 -0.39 -0.07 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.41 7.37 -51.93 -0.38 0.03 16 33 H 0.40 3.41 8.02 -40.82 -0.33 3.08 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.03 0.66 8.04 -51.93 -0.42 0.24 16 39 H 0.07 1.83 7.20 -51.93 -0.37 1.46 16 40 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 41 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.03 0.61 8.10 -51.92 -0.42 0.19 16 43 H 0.14 0.69 7.94 -52.49 -0.42 0.27 16 44 H 0.15 0.83 8.06 -52.48 -0.42 0.41 16 45 H 0.14 1.47 7.51 -52.49 -0.39 1.07 16 LS Contribution 382.24 15.07 5.76 5.76 Total: -1.00 -33.65 382.24 -8.37 -42.02 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -6.43 Total: -0.50 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -2.55 Total: -2.03 kcal Atomic # 7 Polarization: -50.46 SS G_CDS: -0.28 Total: -50.74 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: 0.08 Total: -8.36 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.08 Total: -3.07 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.65 -8.37 -42.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675362895.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.872 kcal (2) G-P(sol) polarization free energy of solvation -33.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds