Wall clock time and date at job start Tue Mar 31 2020 21:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47485 * 2 1 4 4 C 1.50700 * 109.47148 * 239.99850 * 2 1 3 5 5 O 1.21277 * 120.00563 * 240.00220 * 4 2 1 6 6 N 1.34782 * 119.99745 * 60.00345 * 4 2 1 7 7 C 1.46502 * 119.99822 * 179.97438 * 6 4 2 8 8 H 1.08990 * 109.47277 * 324.99671 * 7 6 4 9 9 C 1.53005 * 109.47086 * 85.00338 * 7 6 4 10 10 C 1.53003 * 109.46674 * 204.99908 * 7 6 4 11 11 C 1.53949 * 113.74014 * 162.20061 * 10 7 6 12 12 N 1.47812 * 86.03317 * 222.08050 * 11 10 7 13 13 C 1.36936 * 134.45309 * 204.64049 * 12 11 10 14 14 H 1.07995 * 119.99799 * 182.59222 * 13 12 11 15 15 C 1.38811 * 120.00138 * 2.58711 * 13 12 11 16 16 N 1.31616 * 119.99924 * 353.41345 * 15 13 12 17 17 Si 1.86805 * 120.00052 * 173.41583 * 15 13 12 18 18 H 1.48507 * 109.47018 * 94.97142 * 17 15 13 19 19 H 1.48492 * 109.47011 * 214.97255 * 17 15 13 20 20 H 1.48497 * 109.47015 * 334.97166 * 17 15 13 21 21 C 1.47574 * 91.05355 * 24.54950 * 12 11 10 22 22 C 1.50707 * 109.47312 * 120.00520 * 2 1 3 23 23 C 1.38258 * 119.96082 * 240.00228 * 22 2 1 24 24 C 1.38210 * 120.06434 * 179.97438 * 23 22 2 25 25 C 1.38411 * 120.00632 * 359.97438 * 24 23 22 26 26 F 1.35099 * 120.03740 * 180.02562 * 25 24 23 27 27 C 1.38648 * 119.92776 * 0.02562 * 25 24 23 28 28 F 1.35094 * 120.03924 * 179.97438 * 27 25 24 29 29 C 1.38212 * 119.96472 * 59.72306 * 22 2 1 30 30 H 1.08996 * 109.46880 * 60.00078 * 1 2 3 31 31 H 1.09000 * 109.46983 * 299.99868 * 1 2 3 32 32 H 1.09000 * 109.46849 * 179.97438 * 1 2 3 33 33 H 0.96999 * 119.99824 * 0.02562 * 6 4 2 34 34 H 1.09002 * 109.46292 * 304.48273 * 9 7 6 35 35 H 1.08996 * 109.47421 * 64.48282 * 9 7 6 36 36 H 1.08996 * 109.46699 * 184.48889 * 9 7 6 37 37 H 1.09004 * 112.94497 * 293.79005 * 10 7 6 38 38 H 1.09004 * 113.76687 * 336.34755 * 11 10 7 39 39 H 1.08996 * 113.76735 * 107.74225 * 11 10 7 40 40 H 0.97006 * 119.99913 * 180.02562 * 16 15 13 41 41 H 1.08997 * 113.77194 * 221.15144 * 21 12 11 42 42 H 1.09008 * 113.87313 * 89.76037 * 21 12 11 43 43 H 1.07994 * 119.96634 * 359.96865 * 23 22 2 44 44 H 1.08008 * 119.99508 * 179.97438 * 24 23 22 45 45 H 1.07996 * 119.99957 * 359.97438 * 29 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1193 6 7 1.7068 -0.2499 -2.4546 7 6 2.1956 -0.9402 -3.6508 8 1 3.1948 -1.3320 -3.4613 9 6 1.2519 -2.0944 -3.9949 10 6 2.2468 0.0432 -4.8218 11 6 3.1311 -0.4297 -5.9900 12 7 3.6162 0.9651 -6.0526 13 6 4.1649 1.7465 -7.0342 14 1 4.4822 2.7537 -6.8083 15 6 4.3134 1.2438 -8.3196 16 7 4.0487 -0.0217 -8.5659 17 14 4.8888 2.3635 -9.6997 18 1 6.3596 2.2353 -9.8605 19 1 4.2167 1.9746 -10.9654 20 1 4.5477 3.7707 -9.3702 21 6 3.2699 1.1780 -4.6340 22 6 2.0324 -0.7105 1.2304 23 6 2.8272 -0.0379 2.1401 24 6 3.2887 -0.6873 3.2694 25 6 2.9549 -2.0121 3.4911 26 9 3.4052 -2.6474 4.5952 27 6 2.1579 -2.6866 2.5789 28 9 1.8311 -3.9799 2.7928 29 6 1.6934 -2.0321 1.4512 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.1495 0.5390 -2.5435 34 1 1.1533 -2.7527 -3.1317 35 1 0.2731 -1.6962 -4.2619 36 1 1.6573 -2.6565 -4.8361 37 1 1.2600 0.3885 -5.1302 38 1 3.8968 -1.1486 -5.6983 39 1 2.5676 -0.7400 -6.8698 40 1 4.1528 -0.3731 -9.4641 41 1 2.8170 2.1489 -4.4332 42 1 4.0754 0.9331 -3.9416 43 1 3.0878 0.9959 1.9678 44 1 3.9099 -0.1609 3.9791 45 1 1.0684 -2.5549 0.7424 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675362895.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:58 Heat of formation + Delta-G solvation = -75.286276 kcal Electronic energy + Delta-G solvation = -28839.736765 eV Core-core repulsion = 24493.900717 eV Total energy + Delta-G solvation = -4345.836048 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -50.52170 -49.60927 -41.44172 -40.16095 -39.24381 -36.13004 -35.08179 -34.08580 -31.91754 -31.66414 -29.94123 -29.29757 -26.60769 -25.90136 -25.53055 -24.26370 -23.57426 -22.33571 -21.23644 -20.50274 -19.00529 -18.76644 -18.47603 -18.10863 -17.53444 -17.31257 -17.20803 -16.80321 -16.11421 -16.04284 -15.82167 -15.61496 -15.50341 -15.18116 -15.05050 -14.81218 -14.57149 -14.38164 -14.02292 -13.58445 -13.43754 -13.29598 -13.21301 -13.06320 -13.00383 -12.92664 -12.66035 -12.61896 -12.33765 -12.19784 -12.10725 -12.01818 -11.77138 -11.53605 -11.20810 -10.80922 -10.66132 -10.02854 -9.96366 -9.65449 -8.91817 -7.90742 -5.22851 -0.13491 0.04657 1.46283 1.47595 1.57118 1.73926 2.11867 2.47870 2.51390 2.79320 3.28131 3.31023 3.40678 3.42749 3.60104 3.70734 3.93568 4.01359 4.03733 4.11584 4.25073 4.31273 4.40653 4.48832 4.60999 4.70902 4.80750 4.82599 4.87089 4.88539 4.89261 4.94262 4.99476 5.00698 5.06774 5.14671 5.26719 5.31182 5.33010 5.42143 5.55237 5.61302 5.68811 5.75257 5.94744 6.69692 6.92536 7.38310 7.62055 8.57864 9.26871 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023570 B = 0.002111 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.686513 B =13260.452816 C =13480.543287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.063 4.063 3 H 0.147 0.853 4 C 0.513 3.487 5 O -0.580 6.580 6 N -0.704 5.704 7 C 0.163 3.837 8 H 0.057 0.943 9 C -0.151 4.151 10 C -0.106 4.106 11 C 0.168 3.832 12 N -0.645 5.645 13 C -0.234 4.234 14 H 0.085 0.915 15 C -0.069 4.069 16 N -0.955 5.955 17 Si 0.978 3.022 18 H -0.291 1.291 19 H -0.294 1.294 20 H -0.264 1.264 21 C 0.129 3.871 22 C -0.052 4.052 23 C -0.081 4.081 24 C -0.120 4.120 25 C 0.045 3.955 26 F -0.142 7.142 27 C 0.038 3.962 28 F -0.146 7.146 29 C -0.100 4.100 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.051 0.949 33 H 0.416 0.584 34 H 0.051 0.949 35 H 0.075 0.925 36 H 0.056 0.944 37 H 0.107 0.893 38 H 0.007 0.993 39 H 0.043 0.957 40 H 0.248 0.752 41 H 0.067 0.933 42 H 0.032 0.968 43 H 0.179 0.821 44 H 0.174 0.826 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.613 3.126 24.367 26.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.084 4.084 3 H 0.165 0.835 4 C 0.300 3.700 5 O -0.460 6.460 6 N -0.355 5.355 7 C 0.058 3.942 8 H 0.075 0.925 9 C -0.209 4.209 10 C -0.126 4.126 11 C 0.042 3.958 12 N -0.371 5.371 13 C -0.363 4.363 14 H 0.102 0.898 15 C -0.262 4.262 16 N -0.604 5.604 17 Si 0.806 3.194 18 H -0.218 1.218 19 H -0.220 1.220 20 H -0.189 1.189 21 C 0.004 3.996 22 C -0.052 4.052 23 C -0.099 4.099 24 C -0.139 4.139 25 C 0.025 3.975 26 F -0.121 7.121 27 C 0.018 3.982 28 F -0.125 7.125 29 C -0.119 4.119 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.070 0.930 33 H 0.253 0.747 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.125 0.875 38 H 0.025 0.975 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.085 0.915 42 H 0.049 0.951 43 H 0.197 0.803 44 H 0.191 0.809 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.017 2.450 24.180 26.287 hybrid contribution 0.694 -0.498 -0.947 1.275 sum -9.324 1.952 23.233 25.110 Atomic orbital electron populations 1.21869 0.89749 1.03151 1.05105 1.20412 0.99356 1.01280 0.87342 0.83541 1.21030 0.79399 0.84208 0.85379 1.90742 1.39642 1.28377 1.87224 1.45878 1.53145 1.32133 1.04383 1.20677 0.97598 0.92289 0.83679 0.92497 1.22032 1.00112 0.97636 1.01151 1.23423 0.99231 0.95745 0.94213 1.22143 0.92554 0.86506 0.94604 1.46506 1.73302 1.10370 1.06951 1.19450 1.33019 0.95306 0.88507 0.89764 1.25643 1.03032 0.97652 0.99876 1.70018 1.56330 1.13797 1.20244 0.85074 0.77169 0.78599 0.78563 1.21826 1.22007 1.18860 1.22679 0.94199 0.97676 0.85001 1.19511 0.97131 0.92615 0.95985 1.21419 0.94618 1.02139 0.91723 1.21387 1.01282 0.90930 1.00262 1.18034 1.00848 0.93296 0.85342 1.91486 1.87599 1.82371 1.50643 1.17953 1.02708 0.79630 0.97915 1.91471 1.91361 1.34737 1.94955 1.20906 1.00712 0.95654 0.94642 0.89435 0.89153 0.92951 0.74660 0.92993 0.90605 0.92525 0.87463 0.97494 0.93872 0.94300 0.91519 0.95053 0.80322 0.80863 0.84670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 8.90 71.98 0.64 -0.42 16 2 C -0.06 -0.74 2.90 -12.28 -0.04 -0.77 16 3 H 0.15 0.77 7.87 -2.39 -0.02 0.76 16 4 C 0.51 10.77 6.99 87.66 0.61 11.38 16 5 O -0.58 -18.08 14.79 -3.02 -0.04 -18.13 16 6 N -0.70 -13.66 4.85 -442.52 -2.14 -15.81 16 7 C 0.16 4.49 2.29 44.99 0.10 4.59 16 8 H 0.06 1.96 7.49 -2.39 -0.02 1.94 16 9 C -0.15 -3.85 9.43 71.98 0.68 -3.17 16 10 C -0.11 -3.44 3.35 -10.13 -0.03 -3.48 16 11 C 0.17 7.78 7.03 86.44 0.61 8.39 16 12 N -0.64 -32.33 3.70 -716.18 -2.65 -34.99 16 13 C -0.23 -13.01 10.69 84.03 0.90 -12.11 16 14 H 0.08 4.44 7.84 -2.91 -0.02 4.41 16 15 C -0.07 -3.93 5.50 84.86 0.47 -3.47 16 16 N -0.95 -57.76 11.43 21.65 0.25 -57.52 16 17 Si 0.98 45.35 29.56 68.60 2.03 47.38 16 18 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 19 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 20 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 21 C 0.13 4.73 8.38 86.49 0.72 5.46 16 22 C -0.05 -0.80 4.39 -19.86 -0.09 -0.89 16 23 C -0.08 -0.93 9.67 22.27 0.22 -0.72 16 24 C -0.12 -1.66 10.02 22.30 0.22 -1.43 16 25 C 0.04 0.94 7.31 22.41 0.16 1.10 16 26 F -0.14 -3.31 17.18 44.97 0.77 -2.54 16 27 C 0.04 0.89 7.31 22.41 0.16 1.06 16 28 F -0.15 -3.97 17.18 44.97 0.77 -3.20 16 29 C -0.10 -2.08 7.91 22.31 0.18 -1.90 16 30 H 0.09 0.39 7.56 -2.39 -0.02 0.37 16 31 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.05 0.55 7.37 -2.39 -0.02 0.53 16 33 H 0.42 5.28 8.02 -92.71 -0.74 4.54 16 34 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.11 3.15 8.14 -2.38 -0.02 3.13 16 38 H 0.01 0.36 8.04 -2.38 -0.02 0.34 16 39 H 0.04 2.24 7.20 -2.39 -0.02 2.22 16 40 H 0.25 14.59 8.31 -92.70 -0.77 13.81 16 41 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.03 1.18 8.10 -2.38 -0.02 1.16 16 43 H 0.18 0.70 7.94 -2.91 -0.02 0.67 16 44 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 45 H 0.14 2.89 7.51 -2.91 -0.02 2.87 16 Total: -1.00 -77.29 382.24 4.77 -72.52 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: 0.27 Total: 8.66 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: 5.52 Total: 3.61 kcal Atomic # 7 Polarization: -103.76 SS G_CDS: -4.55 Total: -108.31 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.04 Total: -18.13 kcal Atomic # 9 Polarization: -7.28 SS G_CDS: 1.55 Total: -5.73 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -77.29 4.77 -72.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675362895.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.768 kcal (2) G-P(sol) polarization free energy of solvation -77.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds