Wall clock time and date at job start Tue Mar 31 2020 21:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47316 * 2 1 4 4 C 1.50699 * 109.47068 * 239.99337 * 2 1 3 5 5 O 1.21275 * 120.00266 * 240.00409 * 4 2 1 6 6 N 1.34775 * 119.99732 * 60.00379 * 4 2 1 7 7 C 1.46500 * 119.99956 * 5.16214 * 6 4 2 8 8 C 1.46499 * 119.99919 * 185.16951 * 6 4 2 9 9 C 1.53006 * 109.46858 * 275.92752 * 8 6 4 10 10 H 1.09005 * 112.96370 * 67.51075 * 9 8 6 11 11 C 1.53945 * 113.76859 * 295.83225 * 9 8 6 12 12 C 1.53944 * 86.29140 * 222.08654 * 11 9 8 13 13 N 1.47578 * 113.77359 * 199.18943 * 9 8 6 14 14 C 1.36936 * 134.48801 * 318.93537 * 13 9 8 15 15 H 1.07996 * 120.00589 * 6.47469 * 14 13 9 16 16 C 1.38817 * 119.99836 * 186.47298 * 14 13 9 17 17 N 1.31620 * 119.99708 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00233 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46893 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46945 * 119.99876 * 18 16 14 21 21 H 1.48496 * 109.47517 * 240.00354 * 18 16 14 22 22 C 1.50704 * 109.46941 * 119.99548 * 2 1 3 23 23 C 1.38418 * 120.02469 * 59.72875 * 22 2 1 24 24 F 1.35103 * 120.01108 * 359.96726 * 23 22 2 25 25 C 1.38477 * 119.97408 * 179.74395 * 23 22 2 26 26 C 1.38207 * 120.02310 * 0.50205 * 25 23 22 27 27 C 1.38205 * 120.04918 * 359.77320 * 26 25 23 28 28 C 1.38415 * 120.02684 * 239.99881 * 22 2 1 29 29 F 1.35104 * 120.01257 * 359.97438 * 28 22 2 30 30 H 1.09004 * 109.47028 * 60.00083 * 1 2 3 31 31 H 1.09002 * 109.47383 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46807 * 300.00311 * 1 2 3 33 33 H 1.09003 * 109.47452 * 269.99605 * 7 6 4 34 34 H 1.09004 * 109.46835 * 150.00375 * 7 6 4 35 35 H 1.08990 * 109.47154 * 30.00492 * 7 6 4 36 36 H 1.08992 * 109.47711 * 35.92313 * 8 6 4 37 37 H 1.09001 * 109.47578 * 155.93339 * 8 6 4 38 38 H 1.08994 * 113.74058 * 336.43861 * 11 9 8 39 39 H 1.09000 * 113.74015 * 107.63798 * 11 9 8 40 40 H 1.09002 * 113.76781 * 137.90565 * 12 11 9 41 41 H 1.08998 * 113.77679 * 269.19787 * 12 11 9 42 42 H 0.97003 * 119.99951 * 180.02562 * 17 16 14 43 43 H 1.08000 * 119.98827 * 180.22589 * 25 23 22 44 44 H 1.07995 * 119.97284 * 179.74369 * 26 25 23 45 45 H 1.08005 * 119.98472 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7295 -1.6966 -1.1190 6 7 1.7068 -0.2501 -2.4545 7 6 0.9605 1.0031 -2.5911 8 6 2.0990 -1.0030 -3.6484 9 6 3.5348 -0.6390 -4.0320 10 1 4.2696 -0.9824 -3.3038 11 6 3.7122 0.8332 -4.4456 12 6 4.6140 0.3031 -5.5751 13 7 3.8802 -0.9715 -5.4278 14 6 3.6229 -2.0335 -6.2531 15 1 2.9567 -2.8196 -5.9299 16 6 4.2184 -2.0996 -7.5053 17 7 5.0307 -1.1417 -7.8990 18 14 3.8681 -3.5486 -8.6309 19 1 2.9296 -4.4823 -7.9581 20 1 3.2583 -3.0587 -9.8932 21 1 5.1372 -4.2564 -8.9363 22 6 2.0323 -0.7103 1.2306 23 6 1.6936 -2.0339 1.4531 24 9 0.9119 -2.6894 0.5674 25 6 2.1601 -2.6871 2.5814 26 6 2.9550 -2.0150 3.4905 27 6 3.2892 -0.6919 3.2722 28 6 2.8281 -0.0381 2.1420 29 9 3.1555 1.2552 1.9286 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.1088 0.7917 -2.5864 34 1 1.2310 1.4865 -3.5299 35 1 1.2041 1.6635 -1.7590 36 1 2.0383 -2.0712 -3.4407 37 1 1.4290 -0.7542 -4.4714 38 1 2.7948 1.3030 -4.8003 39 1 4.2401 1.4361 -3.7067 40 1 4.4528 0.7959 -6.5339 41 1 5.6673 0.2377 -5.3023 42 1 5.4466 -1.1877 -8.7742 43 1 1.8989 -3.7209 2.7534 44 1 3.3150 -2.5241 4.3723 45 1 3.9101 -0.1675 3.9836 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688878704.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:16 Heat of formation + Delta-G solvation = -32.869383 kcal Electronic energy + Delta-G solvation = -30186.762877 eV Core-core repulsion = 25842.766163 eV Total energy + Delta-G solvation = -4343.996714 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.24394 -49.05891 -40.24995 -38.86029 -37.72578 -35.25794 -34.40786 -32.09335 -30.50904 -30.04356 -28.30002 -27.78910 -26.57559 -24.72619 -23.33213 -23.08620 -22.96792 -21.56911 -19.34388 -18.86839 -18.30073 -17.77707 -16.75496 -16.57276 -16.31099 -15.93010 -15.76849 -15.67725 -15.43562 -15.28724 -14.78821 -14.59138 -14.29035 -13.94152 -13.78628 -13.44790 -13.41327 -12.95894 -12.67379 -12.48759 -12.34643 -12.29041 -12.23386 -12.12260 -11.96070 -11.59052 -11.36582 -11.09771 -11.00669 -10.78977 -10.69275 -10.39177 -9.84296 -9.72957 -9.59586 -9.42508 -9.07821 -8.93139 -8.75001 -8.30140 -6.80113 -5.71912 -3.03093 0.72392 0.78740 2.78543 3.00887 3.26322 3.42311 3.48377 3.50490 3.70278 4.08617 4.19994 4.35211 4.51464 4.52636 4.64220 4.87188 4.91879 4.97397 5.12812 5.24231 5.34969 5.38969 5.48084 5.52520 5.54576 5.59628 5.65994 5.67032 5.73932 5.80028 5.88489 5.90386 5.96461 6.04050 6.22788 6.31591 6.48149 6.53090 6.66882 6.76347 6.89844 7.30704 7.47317 7.60122 7.62974 8.03760 8.35562 9.10713 9.76933 10.68084 11.46187 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017225 B = 0.002949 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.119166 B = 9492.317424 C = 9900.084139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.071 4.071 3 H 0.111 0.889 4 C 0.517 3.483 5 O -0.526 6.526 6 N -0.604 5.604 7 C 0.074 3.926 8 C 0.121 3.879 9 C 0.130 3.870 10 H 0.048 0.952 11 C -0.159 4.159 12 C 0.166 3.834 13 N -0.603 5.603 14 C -0.220 4.220 15 H 0.079 0.921 16 C -0.008 4.008 17 N -0.921 5.921 18 Si 0.908 3.092 19 H -0.279 1.279 20 H -0.291 1.291 21 H -0.291 1.291 22 C -0.137 4.137 23 C 0.164 3.836 24 F -0.121 7.121 25 C -0.168 4.168 26 C -0.062 4.062 27 C -0.169 4.169 28 C 0.134 3.866 29 F -0.130 7.130 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.047 0.953 40 H 0.065 0.935 41 H 0.027 0.973 42 H 0.252 0.748 43 H 0.142 0.858 44 H 0.142 0.858 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.034 5.797 23.869 26.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.092 4.092 3 H 0.129 0.871 4 C 0.303 3.697 5 O -0.402 6.402 6 N -0.337 5.337 7 C -0.069 4.069 8 C -0.002 4.002 9 C 0.022 3.978 10 H 0.065 0.935 11 C -0.198 4.198 12 C 0.041 3.959 13 N -0.329 5.329 14 C -0.348 4.348 15 H 0.097 0.903 16 C -0.205 4.205 17 N -0.568 5.568 18 Si 0.739 3.261 19 H -0.204 1.204 20 H -0.218 1.218 21 H -0.218 1.218 22 C -0.140 4.140 23 C 0.144 3.856 24 F -0.099 7.099 25 C -0.187 4.187 26 C -0.081 4.081 27 C -0.188 4.188 28 C 0.115 3.885 29 F -0.109 7.109 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.090 0.910 39 H 0.066 0.934 40 H 0.083 0.917 41 H 0.045 0.955 42 H 0.062 0.938 43 H 0.160 0.840 44 H 0.160 0.840 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -9.656 5.094 23.546 25.954 hybrid contribution 0.049 -0.670 -0.914 1.135 sum -9.606 4.424 22.632 24.981 Atomic orbital electron populations 1.22058 0.91561 1.04058 1.03613 1.20156 0.98266 1.00619 0.90164 0.87089 1.20187 0.80483 0.84846 0.84141 1.90729 1.36781 1.26512 1.86133 1.47717 1.55813 1.24186 1.05970 1.22006 0.95755 0.85747 1.03407 1.21762 0.97427 0.96130 0.84854 1.22512 0.93593 0.92638 0.89044 0.93492 1.23770 1.00670 0.95806 0.99519 1.22112 0.93013 0.85108 0.95671 1.46135 1.60887 1.19732 1.06162 1.19072 1.21882 0.98873 0.94952 0.90305 1.24802 0.99038 0.98504 0.98116 1.69846 1.33863 1.33080 1.20033 0.86096 0.77395 0.81954 0.80662 1.20438 1.21795 1.21782 1.19386 1.02619 0.94272 0.97687 1.17089 0.91781 0.89070 0.87658 1.91525 1.71057 1.80339 1.66976 1.21208 1.01459 1.01592 0.94457 1.20818 0.95388 0.93184 0.98668 1.21124 1.03814 0.96059 0.97773 1.17144 0.97146 0.79107 0.95119 1.91509 1.90735 1.33885 1.94738 0.90187 0.91198 0.91415 0.92412 0.90255 0.91358 0.90915 0.89823 0.91045 0.93416 0.91681 0.95522 0.93790 0.84040 0.83995 0.84041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 8.70 37.16 0.32 -1.14 16 2 C -0.07 -0.85 1.99 -92.92 -0.18 -1.03 16 3 H 0.11 1.18 6.23 -51.93 -0.32 0.86 16 4 C 0.52 8.24 6.43 -10.99 -0.07 8.16 16 5 O -0.53 -10.56 14.32 5.56 0.08 -10.48 16 6 N -0.60 -9.06 2.76 -181.58 -0.50 -9.56 16 7 C 0.07 0.78 8.60 59.85 0.51 1.29 16 8 C 0.12 2.27 5.23 -4.04 -0.02 2.25 16 9 C 0.13 2.83 4.54 -66.86 -0.30 2.53 16 10 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 11 C -0.16 -3.08 7.26 -25.79 -0.19 -3.27 16 12 C 0.17 4.06 7.37 -2.85 -0.02 4.04 16 13 N -0.60 -15.88 3.58 -169.74 -0.61 -16.48 16 14 C -0.22 -6.31 10.51 -15.06 -0.16 -6.47 16 15 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 16 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 17 N -0.92 -27.96 11.58 55.49 0.64 -27.32 16 18 Si 0.91 22.69 29.55 -169.99 -5.02 17.67 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 21 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 22 C -0.14 -1.70 4.40 -104.49 -0.46 -2.16 16 23 C 0.16 2.06 6.14 -39.43 -0.24 1.82 16 24 F -0.12 -1.73 13.81 2.25 0.03 -1.70 16 25 C -0.17 -1.64 10.03 -39.50 -0.40 -2.04 16 26 C -0.06 -0.49 10.04 -39.60 -0.40 -0.89 16 27 C -0.17 -1.48 10.02 -39.51 -0.40 -1.87 16 28 C 0.13 1.50 7.24 -39.43 -0.29 1.21 16 29 F -0.13 -1.47 16.19 2.25 0.04 -1.44 16 30 H 0.08 0.64 4.81 -51.93 -0.25 0.39 16 31 H 0.07 0.75 6.29 -51.93 -0.33 0.42 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.50 6.76 -51.93 -0.35 0.15 16 34 H 0.08 0.85 6.50 -51.93 -0.34 0.51 16 35 H 0.07 0.57 6.31 -51.93 -0.33 0.25 16 36 H 0.07 1.51 7.69 -51.93 -0.40 1.11 16 37 H 0.08 1.54 8.03 -51.93 -0.42 1.12 16 38 H 0.07 1.26 6.81 -51.93 -0.35 0.91 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.06 1.70 7.48 -51.93 -0.39 1.32 16 41 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 44 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 45 H 0.14 0.89 8.06 -52.48 -0.42 0.47 16 LS Contribution 366.91 15.07 5.53 5.53 Total: -1.00 -34.94 366.91 -8.17 -43.11 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -5.98 Total: -1.42 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -2.38 Total: 2.09 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: -0.47 Total: -53.36 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.08 Total: -10.48 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.07 Total: -3.14 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.94 -8.17 -43.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688878704.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.242 kcal (2) G-P(sol) polarization free energy of solvation -34.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds