Wall clock time and date at job start Tue Mar 31 2020 21:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47316 * 2 1 4 4 C 1.50699 * 109.47068 * 239.99337 * 2 1 3 5 5 O 1.21275 * 120.00266 * 240.00409 * 4 2 1 6 6 N 1.34775 * 119.99732 * 60.00379 * 4 2 1 7 7 C 1.46500 * 119.99956 * 5.16214 * 6 4 2 8 8 C 1.46499 * 119.99919 * 185.16951 * 6 4 2 9 9 C 1.53006 * 109.46858 * 275.92752 * 8 6 4 10 10 H 1.09005 * 112.96370 * 67.51075 * 9 8 6 11 11 C 1.53945 * 113.76859 * 295.83225 * 9 8 6 12 12 C 1.53944 * 86.29140 * 222.08654 * 11 9 8 13 13 N 1.47578 * 113.77359 * 199.18943 * 9 8 6 14 14 C 1.36936 * 134.48801 * 318.93537 * 13 9 8 15 15 H 1.07996 * 120.00589 * 6.47469 * 14 13 9 16 16 C 1.38817 * 119.99836 * 186.47298 * 14 13 9 17 17 N 1.31620 * 119.99708 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00233 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46893 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46945 * 119.99876 * 18 16 14 21 21 H 1.48496 * 109.47517 * 240.00354 * 18 16 14 22 22 C 1.50704 * 109.46941 * 119.99548 * 2 1 3 23 23 C 1.38418 * 120.02469 * 59.72875 * 22 2 1 24 24 F 1.35103 * 120.01108 * 359.96726 * 23 22 2 25 25 C 1.38477 * 119.97408 * 179.74395 * 23 22 2 26 26 C 1.38207 * 120.02310 * 0.50205 * 25 23 22 27 27 C 1.38205 * 120.04918 * 359.77320 * 26 25 23 28 28 C 1.38415 * 120.02684 * 239.99881 * 22 2 1 29 29 F 1.35104 * 120.01257 * 359.97438 * 28 22 2 30 30 H 1.09004 * 109.47028 * 60.00083 * 1 2 3 31 31 H 1.09002 * 109.47383 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46807 * 300.00311 * 1 2 3 33 33 H 1.09003 * 109.47452 * 269.99605 * 7 6 4 34 34 H 1.09004 * 109.46835 * 150.00375 * 7 6 4 35 35 H 1.08990 * 109.47154 * 30.00492 * 7 6 4 36 36 H 1.08992 * 109.47711 * 35.92313 * 8 6 4 37 37 H 1.09001 * 109.47578 * 155.93339 * 8 6 4 38 38 H 1.08994 * 113.74058 * 336.43861 * 11 9 8 39 39 H 1.09000 * 113.74015 * 107.63798 * 11 9 8 40 40 H 1.09002 * 113.76781 * 137.90565 * 12 11 9 41 41 H 1.08998 * 113.77679 * 269.19787 * 12 11 9 42 42 H 0.97003 * 119.99951 * 180.02562 * 17 16 14 43 43 H 1.08000 * 119.98827 * 180.22589 * 25 23 22 44 44 H 1.07995 * 119.97284 * 179.74369 * 26 25 23 45 45 H 1.08005 * 119.98472 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7295 -1.6966 -1.1190 6 7 1.7068 -0.2501 -2.4545 7 6 0.9605 1.0031 -2.5911 8 6 2.0990 -1.0030 -3.6484 9 6 3.5348 -0.6390 -4.0320 10 1 4.2696 -0.9824 -3.3038 11 6 3.7122 0.8332 -4.4456 12 6 4.6140 0.3031 -5.5751 13 7 3.8802 -0.9715 -5.4278 14 6 3.6229 -2.0335 -6.2531 15 1 2.9567 -2.8196 -5.9299 16 6 4.2184 -2.0996 -7.5053 17 7 5.0307 -1.1417 -7.8990 18 14 3.8681 -3.5486 -8.6309 19 1 2.9296 -4.4823 -7.9581 20 1 3.2583 -3.0587 -9.8932 21 1 5.1372 -4.2564 -8.9363 22 6 2.0323 -0.7103 1.2306 23 6 1.6936 -2.0339 1.4531 24 9 0.9119 -2.6894 0.5674 25 6 2.1601 -2.6871 2.5814 26 6 2.9550 -2.0150 3.4905 27 6 3.2892 -0.6919 3.2722 28 6 2.8281 -0.0381 2.1420 29 9 3.1555 1.2552 1.9286 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.1088 0.7917 -2.5864 34 1 1.2310 1.4865 -3.5299 35 1 1.2041 1.6635 -1.7590 36 1 2.0383 -2.0712 -3.4407 37 1 1.4290 -0.7542 -4.4714 38 1 2.7948 1.3030 -4.8003 39 1 4.2401 1.4361 -3.7067 40 1 4.4528 0.7959 -6.5339 41 1 5.6673 0.2377 -5.3023 42 1 5.4466 -1.1877 -8.7742 43 1 1.8989 -3.7209 2.7534 44 1 3.3150 -2.5241 4.3723 45 1 3.9101 -0.1675 3.9836 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688878704.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:15 Heat of formation + Delta-G solvation = -53.854813 kcal Electronic energy + Delta-G solvation = -30187.672873 eV Core-core repulsion = 25842.766163 eV Total energy + Delta-G solvation = -4344.906710 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -50.05142 -50.00203 -41.42657 -39.90889 -39.28623 -36.55241 -35.36463 -34.22081 -31.25205 -30.99071 -29.87710 -29.53629 -27.64344 -25.66965 -25.34805 -24.36134 -23.85109 -22.72061 -21.02809 -20.19747 -19.11886 -18.90234 -18.43928 -17.63165 -17.46105 -17.08661 -16.88435 -16.63698 -16.56431 -16.41474 -16.28280 -15.82582 -15.44931 -15.42665 -15.06822 -14.69442 -14.37584 -14.16262 -13.89960 -13.76204 -13.53593 -13.41352 -13.36030 -13.08325 -13.01374 -12.88251 -12.82521 -12.60969 -12.48566 -12.32018 -12.23482 -11.86924 -11.85868 -11.58230 -11.31543 -10.89151 -10.79691 -9.88526 -9.71135 -9.65362 -8.91829 -7.93399 -5.26310 -0.03300 0.01988 1.42164 1.44003 1.54077 1.59161 1.91852 2.40306 2.48028 2.92482 3.25129 3.27224 3.37005 3.44150 3.52671 3.73975 3.86144 3.88752 4.07051 4.16332 4.21084 4.24834 4.27775 4.33413 4.49095 4.59709 4.68651 4.73145 4.80645 4.82484 4.88834 4.90259 4.95656 4.98790 5.02370 5.04447 5.09058 5.18987 5.21441 5.24375 5.44401 5.53264 5.69103 5.80005 5.91548 6.41206 6.90598 7.14759 7.58537 8.55711 9.24679 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017225 B = 0.002949 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.119166 B = 9492.317424 C = 9900.084139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.063 4.063 3 H 0.128 0.872 4 C 0.510 3.490 5 O -0.577 6.577 6 N -0.602 5.602 7 C 0.064 3.936 8 C 0.139 3.861 9 C 0.130 3.870 10 H 0.019 0.981 11 C -0.121 4.121 12 C 0.158 3.842 13 N -0.628 5.628 14 C -0.232 4.232 15 H 0.078 0.922 16 C -0.066 4.066 17 N -0.953 5.953 18 Si 0.976 3.024 19 H -0.268 1.268 20 H -0.286 1.286 21 H -0.294 1.294 22 C -0.158 4.158 23 C 0.130 3.870 24 F -0.141 7.141 25 C -0.172 4.172 26 C -0.052 4.052 27 C -0.162 4.162 28 C 0.117 3.883 29 F -0.134 7.134 30 H 0.096 0.904 31 H 0.051 0.949 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.042 0.958 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.043 0.957 41 H 0.007 0.993 42 H 0.249 0.751 43 H 0.157 0.843 44 H 0.182 0.818 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.342 6.903 26.048 29.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.084 4.084 3 H 0.145 0.855 4 C 0.299 3.701 5 O -0.456 6.456 6 N -0.334 5.334 7 C -0.077 4.077 8 C 0.015 3.985 9 C 0.023 3.977 10 H 0.036 0.964 11 C -0.159 4.159 12 C 0.033 3.967 13 N -0.355 5.355 14 C -0.360 4.360 15 H 0.096 0.904 16 C -0.259 4.259 17 N -0.602 5.602 18 Si 0.804 3.196 19 H -0.192 1.192 20 H -0.213 1.213 21 H -0.221 1.221 22 C -0.160 4.160 23 C 0.110 3.890 24 F -0.119 7.119 25 C -0.191 4.191 26 C -0.069 4.069 27 C -0.181 4.181 28 C 0.098 3.902 29 F -0.113 7.113 30 H 0.115 0.885 31 H 0.071 0.929 32 H 0.107 0.893 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.114 0.886 36 H 0.061 0.939 37 H 0.109 0.891 38 H 0.115 0.885 39 H 0.094 0.906 40 H 0.061 0.939 41 H 0.025 0.975 42 H 0.058 0.942 43 H 0.175 0.825 44 H 0.200 0.800 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -11.007 6.240 25.760 28.700 hybrid contribution 0.511 -1.028 -1.479 1.873 sum -10.496 5.212 24.281 26.961 Atomic orbital electron populations 1.22061 0.89597 1.03519 1.05490 1.20171 0.99769 1.00534 0.87919 0.85468 1.20989 0.79510 0.84346 0.85298 1.90699 1.39109 1.28875 1.86946 1.47769 1.55803 1.25286 1.04514 1.22367 0.96649 0.83923 1.04787 1.21277 0.95544 0.95084 0.86641 1.22556 0.94612 0.94201 0.86352 0.96352 1.23518 1.00480 0.94521 0.97392 1.22095 0.92902 0.85182 0.96535 1.46538 1.61193 1.19760 1.08021 1.19402 1.21568 0.99472 0.95569 0.90392 1.25633 0.99312 1.01208 0.99703 1.70020 1.35088 1.34840 1.20246 0.85047 0.77078 0.78838 0.78612 1.19207 1.21275 1.22140 1.19536 1.03632 0.94593 0.98284 1.17511 0.93088 0.89727 0.88627 1.91466 1.71818 1.80749 1.67904 1.21558 1.01197 1.02479 0.93851 1.21293 0.93726 0.92823 0.99082 1.21546 1.02964 0.96412 0.97158 1.17379 0.97640 0.79194 0.95986 1.91493 1.90809 1.34085 1.94872 0.88496 0.92949 0.89266 0.89962 0.89909 0.88648 0.93947 0.89143 0.88455 0.90570 0.93875 0.97495 0.94222 0.82497 0.80048 0.81236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 8.70 71.98 0.63 -1.91 16 2 C -0.06 -1.43 1.99 -12.28 -0.02 -1.45 16 3 H 0.13 2.41 6.23 -2.39 -0.01 2.39 16 4 C 0.51 16.19 6.43 87.66 0.56 16.76 16 5 O -0.58 -24.10 14.32 -3.02 -0.04 -24.14 16 6 N -0.60 -17.44 2.76 -846.77 -2.33 -19.78 16 7 C 0.06 1.13 8.60 127.77 1.10 2.23 16 8 C 0.14 5.25 5.23 86.38 0.45 5.70 16 9 C 0.13 5.74 4.54 45.10 0.20 5.94 16 10 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 11 C -0.12 -4.54 7.26 31.25 0.23 -4.31 16 12 C 0.16 7.89 7.37 86.44 0.64 8.53 16 13 N -0.63 -33.92 3.58 -690.92 -2.47 -36.40 16 14 C -0.23 -13.59 10.51 84.03 0.88 -12.71 16 15 H 0.08 4.46 7.83 -2.91 -0.02 4.43 16 16 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 17 N -0.95 -59.36 11.58 21.65 0.25 -59.11 16 18 Si 0.98 47.47 29.55 68.60 2.03 49.50 16 19 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 20 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 21 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 22 C -0.16 -3.82 4.40 -19.78 -0.09 -3.91 16 23 C 0.13 3.28 6.14 22.37 0.14 3.41 16 24 F -0.14 -4.22 13.81 44.97 0.62 -3.60 16 25 C -0.17 -3.15 10.03 22.32 0.22 -2.92 16 26 C -0.05 -0.66 10.04 22.25 0.22 -0.44 16 27 C -0.16 -2.40 10.02 22.32 0.22 -2.17 16 28 C 0.12 2.43 7.24 22.37 0.16 2.59 16 29 F -0.13 -2.79 16.19 44.97 0.73 -2.06 16 30 H 0.10 1.25 4.81 -2.38 -0.01 1.24 16 31 H 0.05 1.09 6.29 -2.39 -0.01 1.08 16 32 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 33 H 0.08 1.11 6.76 -2.39 -0.02 1.09 16 34 H 0.08 1.46 6.50 -2.39 -0.02 1.44 16 35 H 0.10 1.22 6.31 -2.39 -0.02 1.20 16 36 H 0.04 1.84 7.69 -2.39 -0.02 1.82 16 37 H 0.09 3.28 8.03 -2.39 -0.02 3.26 16 38 H 0.10 3.18 6.81 -2.39 -0.02 3.16 16 39 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 40 H 0.04 2.32 7.48 -2.39 -0.02 2.30 16 41 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 42 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 43 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 44 H 0.18 0.84 8.06 -2.91 -0.02 0.82 16 45 H 0.17 1.49 8.06 -2.91 -0.02 1.46 16 Total: -1.00 -80.74 366.91 5.81 -74.93 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: 1.02 Total: 8.73 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: 6.02 Total: 11.93 kcal Atomic # 7 Polarization: -110.72 SS G_CDS: -4.56 Total: -115.28 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.04 Total: -24.14 kcal Atomic # 9 Polarization: -7.01 SS G_CDS: 1.35 Total: -5.66 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.03 Total: 49.50 kcal Total: -80.74 5.81 -74.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688878704.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.073 kcal (2) G-P(sol) polarization free energy of solvation -80.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds