Wall clock time and date at job start Tue Mar 31 2020 21:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47117 * 2 1 4 4 C 1.50701 * 109.46748 * 119.99533 * 2 1 3 5 5 O 1.21284 * 119.99533 * 120.00517 * 4 2 1 6 6 N 1.34773 * 120.00168 * 299.99779 * 4 2 1 7 7 C 1.46494 * 119.99983 * 0.02562 * 6 4 2 8 8 C 1.46501 * 119.99858 * 179.97438 * 6 4 2 9 9 C 1.53000 * 109.46917 * 95.45480 * 8 6 4 10 10 H 1.09002 * 112.96400 * 66.56793 * 9 8 6 11 11 C 1.53941 * 113.77121 * 294.88927 * 9 8 6 12 12 C 1.53940 * 86.29329 * 222.09136 * 11 9 8 13 13 N 1.47578 * 113.76794 * 198.24486 * 9 8 6 14 14 C 1.36932 * 134.49399 * 318.92783 * 13 9 8 15 15 H 1.08001 * 120.00266 * 355.66201 * 14 13 9 16 16 C 1.38818 * 120.00094 * 175.65684 * 14 13 9 17 17 N 1.31619 * 119.99791 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00257 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47473 * 89.99428 * 18 16 14 20 20 H 1.48501 * 109.47127 * 210.00148 * 18 16 14 21 21 H 1.48506 * 109.46879 * 329.99745 * 18 16 14 22 22 C 1.50704 * 109.47247 * 239.99797 * 2 1 3 23 23 C 1.38257 * 119.96173 * 299.72083 * 22 2 1 24 24 C 1.38215 * 120.06914 * 179.76914 * 23 22 2 25 25 C 1.38411 * 119.99679 * 0.50762 * 24 23 22 26 26 F 1.35101 * 120.03533 * 179.72133 * 25 24 23 27 27 C 1.38646 * 119.93063 * 359.75186 * 25 24 23 28 28 F 1.35101 * 120.03500 * 179.97438 * 27 25 24 29 29 C 1.38213 * 119.96665 * 120.00230 * 22 2 1 30 30 H 1.08994 * 109.47411 * 300.00334 * 1 2 3 31 31 H 1.08998 * 109.47117 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47125 * 60.00394 * 1 2 3 33 33 H 1.09006 * 109.47482 * 91.84827 * 7 6 4 34 34 H 1.09003 * 109.47402 * 211.84444 * 7 6 4 35 35 H 1.09001 * 109.47069 * 331.84367 * 7 6 4 36 36 H 1.08997 * 109.46901 * 215.45073 * 8 6 4 37 37 H 1.08997 * 109.47199 * 335.45818 * 8 6 4 38 38 H 1.09000 * 113.74356 * 336.43665 * 11 9 8 39 39 H 1.09000 * 113.74636 * 107.64007 * 11 9 8 40 40 H 1.08996 * 113.77367 * 137.90618 * 12 11 9 41 41 H 1.08998 * 113.77422 * 269.19216 * 12 11 9 42 42 H 0.97004 * 119.99817 * 179.97438 * 17 16 14 43 43 H 1.08002 * 119.96564 * 0.02562 * 23 22 2 44 44 H 1.07994 * 120.00125 * 180.26153 * 24 23 22 45 45 H 1.08001 * 119.99790 * 0.02562 * 29 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 1.2306 5 8 2.7296 -1.6964 1.1193 6 7 1.7067 -0.2498 2.4546 7 6 0.8641 0.9410 2.5889 8 6 2.1945 -0.9407 3.6508 9 6 3.4725 -0.2612 4.1466 10 1 3.3013 0.7507 4.5137 11 6 4.6552 -0.3743 3.1677 12 6 5.5245 -0.6547 4.4068 13 7 4.2748 -1.0976 5.0603 14 6 3.9791 -1.9435 6.0957 15 1 2.9584 -2.0481 6.4329 16 6 4.9912 -2.6666 6.7119 17 7 6.2351 -2.5388 6.3013 18 14 4.5877 -3.8210 8.1240 19 1 4.2875 -5.1730 7.5879 20 1 5.7494 -3.9006 9.0457 21 1 3.4053 -3.3072 8.8611 22 6 2.0324 -0.7105 -1.2305 23 6 1.7027 -2.0358 -1.4455 24 6 2.1583 -2.6882 -2.5756 25 6 2.9541 -2.0176 -3.4882 26 9 3.4045 -2.6562 -4.5903 27 6 3.2891 -0.6901 -3.2698 28 9 4.0663 -0.0337 -4.1589 29 6 2.8270 -0.0381 -2.1398 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.1817 0.6407 2.6554 34 1 1.1440 1.4844 3.4914 35 1 1.0028 1.5842 1.7199 36 1 1.4342 -0.8977 4.4306 37 1 2.4073 -1.9817 3.4077 38 1 4.5798 -1.2199 2.4840 39 1 4.8974 0.5605 2.6621 40 1 6.2523 -1.4529 4.2614 41 1 5.9589 0.2410 4.8507 42 1 6.9424 -3.0439 6.7321 43 1 1.0851 -2.5607 -0.7317 44 1 1.8966 -3.7222 -2.7446 45 1 3.0879 0.9957 -1.9681 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691679582.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:34 Heat of formation + Delta-G solvation = -33.731619 kcal Electronic energy + Delta-G solvation = -29604.973495 eV Core-core repulsion = 25260.939392 eV Total energy + Delta-G solvation = -4344.034103 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.60319 -48.68098 -40.59409 -38.91774 -37.59665 -35.38477 -34.15057 -32.09828 -31.12720 -29.64375 -28.15700 -27.79091 -26.75214 -24.69935 -23.49207 -23.26586 -22.86701 -21.47867 -19.22715 -18.91624 -18.11139 -17.58203 -17.13447 -16.73565 -16.53808 -16.42246 -15.94121 -15.48790 -15.09555 -14.91266 -14.72426 -14.63403 -14.17187 -13.97803 -13.82324 -13.79776 -13.48268 -13.17425 -12.91894 -12.63521 -12.43020 -12.33496 -12.08238 -11.87773 -11.81730 -11.54539 -11.37275 -11.23338 -10.99225 -10.82613 -10.65199 -10.41884 -9.81604 -9.69300 -9.62543 -9.48493 -9.21469 -8.79316 -8.73523 -8.35937 -6.81331 -5.70521 -3.04063 0.70546 0.82182 2.73126 2.96130 3.28292 3.41424 3.45460 3.47826 3.60291 4.08123 4.19810 4.31557 4.48304 4.55600 4.76845 4.78450 4.84400 4.97692 5.02911 5.21546 5.27911 5.33440 5.42024 5.48532 5.51779 5.57362 5.59400 5.62827 5.68996 5.79470 5.87948 5.89947 5.97725 6.13901 6.15730 6.39749 6.54299 6.57190 6.70398 6.77514 6.83967 7.32411 7.48232 7.60017 7.67911 8.04967 8.32319 9.08660 9.76281 10.66894 11.45635 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014813 B = 0.002801 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.799971 B = 9993.354310 C =10683.438597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.071 4.071 3 H 0.107 0.893 4 C 0.515 3.485 5 O -0.519 6.519 6 N -0.606 5.606 7 C 0.074 3.926 8 C 0.116 3.884 9 C 0.129 3.871 10 H 0.040 0.960 11 C -0.156 4.156 12 C 0.155 3.845 13 N -0.600 5.600 14 C -0.223 4.223 15 H 0.077 0.923 16 C -0.007 4.007 17 N -0.918 5.918 18 Si 0.910 3.090 19 H -0.288 1.288 20 H -0.291 1.291 21 H -0.282 1.282 22 C -0.045 4.045 23 C -0.063 4.063 24 C -0.125 4.125 25 C 0.065 3.935 26 F -0.132 7.132 27 C 0.064 3.936 28 F -0.131 7.131 29 C -0.117 4.117 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.040 0.960 40 H 0.076 0.924 41 H 0.021 0.979 42 H 0.253 0.747 43 H 0.138 0.862 44 H 0.146 0.854 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.165 8.391 -17.726 24.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.093 4.093 3 H 0.125 0.875 4 C 0.301 3.699 5 O -0.394 6.394 6 N -0.340 5.340 7 C -0.069 4.069 8 C -0.007 4.007 9 C 0.021 3.979 10 H 0.057 0.943 11 C -0.195 4.195 12 C 0.030 3.970 13 N -0.326 5.326 14 C -0.351 4.351 15 H 0.095 0.905 16 C -0.203 4.203 17 N -0.565 5.565 18 Si 0.740 3.260 19 H -0.215 1.215 20 H -0.217 1.217 21 H -0.208 1.208 22 C -0.045 4.045 23 C -0.081 4.081 24 C -0.144 4.144 25 C 0.045 3.955 26 F -0.110 7.110 27 C 0.044 3.956 28 F -0.109 7.109 29 C -0.136 4.136 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.112 0.888 38 H 0.105 0.895 39 H 0.058 0.942 40 H 0.094 0.906 41 H 0.039 0.961 42 H 0.063 0.937 43 H 0.156 0.844 44 H 0.163 0.837 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -13.650 7.616 -17.571 23.517 hybrid contribution 0.168 -0.382 0.660 0.781 sum -13.482 7.234 -16.911 22.805 Atomic orbital electron populations 1.22083 0.91733 1.03579 1.03743 1.20294 0.97984 1.00375 0.90628 0.87461 1.20242 0.80660 0.84954 0.84060 1.90767 1.36734 1.25986 1.85923 1.47758 1.50904 1.29134 1.06197 1.21964 0.94324 0.87553 1.03065 1.21849 0.96225 0.98183 0.84464 1.22504 0.91507 0.93618 0.90293 0.94300 1.23790 0.98012 1.00067 0.97606 1.22292 0.90967 0.96821 0.86895 1.45944 1.01738 1.48199 1.36739 1.18958 0.93505 1.15264 1.07360 0.90505 1.24776 0.95376 1.00143 1.00040 1.69832 0.98990 1.44355 1.43326 0.86164 0.77009 0.81048 0.81764 1.21528 1.21711 1.20775 1.19213 0.96718 0.94132 0.94467 1.20886 0.98332 0.93469 0.95419 1.21059 0.98257 1.01201 0.93909 1.17703 1.00950 0.90010 0.86822 1.91519 1.87534 1.81425 1.50534 1.17547 0.97331 0.89816 0.90912 1.91523 1.72323 1.80528 1.66575 1.20900 0.98655 1.01331 0.92735 0.90243 0.91701 0.91235 0.92405 0.90874 0.91061 0.91523 0.88771 0.89547 0.94166 0.90592 0.96122 0.93720 0.84370 0.83660 0.83730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 8.63 37.16 0.32 -0.66 16 2 C -0.07 -0.64 2.09 -92.92 -0.19 -0.84 16 3 H 0.11 0.76 7.14 -51.93 -0.37 0.39 16 4 C 0.51 6.87 6.52 -10.99 -0.07 6.80 16 5 O -0.52 -9.22 13.00 5.55 0.07 -9.14 16 6 N -0.61 -7.80 2.79 -181.57 -0.51 -8.31 16 7 C 0.07 0.61 8.82 59.84 0.53 1.14 16 8 C 0.12 1.99 5.41 -4.04 -0.02 1.97 16 9 C 0.13 2.60 4.57 -66.87 -0.31 2.29 16 10 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 11 C -0.16 -3.22 7.25 -25.80 -0.19 -3.41 16 12 C 0.16 3.85 7.63 -2.85 -0.02 3.83 16 13 N -0.60 -15.47 3.58 -169.74 -0.61 -16.08 16 14 C -0.22 -6.25 10.51 -15.06 -0.16 -6.40 16 15 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 16 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 17 N -0.92 -27.80 11.32 55.49 0.63 -27.17 16 18 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 C -0.04 -0.46 4.40 -104.62 -0.46 -0.92 16 23 C -0.06 -0.66 7.92 -39.58 -0.31 -0.97 16 24 C -0.13 -1.30 10.02 -39.53 -0.40 -1.69 16 25 C 0.07 0.77 7.31 -39.37 -0.29 0.48 16 26 F -0.13 -1.66 17.18 2.25 0.04 -1.62 16 27 C 0.06 0.75 7.31 -39.37 -0.29 0.46 16 28 F -0.13 -1.63 17.18 2.25 0.04 -1.59 16 29 C -0.12 -1.19 9.65 -39.53 -0.38 -1.57 16 30 H 0.08 0.42 4.56 -51.93 -0.24 0.18 16 31 H 0.06 0.45 7.40 -51.93 -0.38 0.06 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.38 7.07 -51.93 -0.37 0.01 16 34 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 35 H 0.07 0.42 5.87 -51.93 -0.30 0.11 16 36 H 0.07 1.08 8.11 -51.93 -0.42 0.65 16 37 H 0.09 1.94 7.26 -51.93 -0.38 1.56 16 38 H 0.09 1.93 6.56 -51.93 -0.34 1.59 16 39 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.08 2.10 6.99 -51.93 -0.36 1.74 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.14 1.37 7.51 -52.49 -0.39 0.98 16 44 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 45 H 0.14 1.13 7.94 -52.49 -0.42 0.72 16 LS Contribution 370.75 15.07 5.59 5.59 Total: -1.00 -34.04 370.75 -8.16 -42.21 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -6.06 Total: -1.42 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -2.33 Total: 0.23 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: -0.49 Total: -51.56 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.07 Total: -9.14 kcal Atomic # 9 Polarization: -3.29 SS G_CDS: 0.08 Total: -3.21 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.04 -8.16 -42.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691679582.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.478 kcal (2) G-P(sol) polarization free energy of solvation -34.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds