Wall clock time and date at job start Tue Mar 31 2020 21:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47117 * 2 1 4 4 C 1.50701 * 109.46748 * 119.99533 * 2 1 3 5 5 O 1.21284 * 119.99533 * 120.00517 * 4 2 1 6 6 N 1.34773 * 120.00168 * 299.99779 * 4 2 1 7 7 C 1.46494 * 119.99983 * 0.02562 * 6 4 2 8 8 C 1.46501 * 119.99858 * 179.97438 * 6 4 2 9 9 C 1.53000 * 109.46917 * 95.45480 * 8 6 4 10 10 H 1.09002 * 112.96400 * 66.56793 * 9 8 6 11 11 C 1.53941 * 113.77121 * 294.88927 * 9 8 6 12 12 C 1.53940 * 86.29329 * 222.09136 * 11 9 8 13 13 N 1.47578 * 113.76794 * 198.24486 * 9 8 6 14 14 C 1.36932 * 134.49399 * 318.92783 * 13 9 8 15 15 H 1.08001 * 120.00266 * 355.66201 * 14 13 9 16 16 C 1.38818 * 120.00094 * 175.65684 * 14 13 9 17 17 N 1.31619 * 119.99791 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00257 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47473 * 89.99428 * 18 16 14 20 20 H 1.48501 * 109.47127 * 210.00148 * 18 16 14 21 21 H 1.48506 * 109.46879 * 329.99745 * 18 16 14 22 22 C 1.50704 * 109.47247 * 239.99797 * 2 1 3 23 23 C 1.38257 * 119.96173 * 299.72083 * 22 2 1 24 24 C 1.38215 * 120.06914 * 179.76914 * 23 22 2 25 25 C 1.38411 * 119.99679 * 0.50762 * 24 23 22 26 26 F 1.35101 * 120.03533 * 179.72133 * 25 24 23 27 27 C 1.38646 * 119.93063 * 359.75186 * 25 24 23 28 28 F 1.35101 * 120.03500 * 179.97438 * 27 25 24 29 29 C 1.38213 * 119.96665 * 120.00230 * 22 2 1 30 30 H 1.08994 * 109.47411 * 300.00334 * 1 2 3 31 31 H 1.08998 * 109.47117 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47125 * 60.00394 * 1 2 3 33 33 H 1.09006 * 109.47482 * 91.84827 * 7 6 4 34 34 H 1.09003 * 109.47402 * 211.84444 * 7 6 4 35 35 H 1.09001 * 109.47069 * 331.84367 * 7 6 4 36 36 H 1.08997 * 109.46901 * 215.45073 * 8 6 4 37 37 H 1.08997 * 109.47199 * 335.45818 * 8 6 4 38 38 H 1.09000 * 113.74356 * 336.43665 * 11 9 8 39 39 H 1.09000 * 113.74636 * 107.64007 * 11 9 8 40 40 H 1.08996 * 113.77367 * 137.90618 * 12 11 9 41 41 H 1.08998 * 113.77422 * 269.19216 * 12 11 9 42 42 H 0.97004 * 119.99817 * 179.97438 * 17 16 14 43 43 H 1.08002 * 119.96564 * 0.02562 * 23 22 2 44 44 H 1.07994 * 120.00125 * 180.26153 * 24 23 22 45 45 H 1.08001 * 119.99790 * 0.02562 * 29 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 1.2306 5 8 2.7296 -1.6964 1.1193 6 7 1.7067 -0.2498 2.4546 7 6 0.8641 0.9410 2.5889 8 6 2.1945 -0.9407 3.6508 9 6 3.4725 -0.2612 4.1466 10 1 3.3013 0.7507 4.5137 11 6 4.6552 -0.3743 3.1677 12 6 5.5245 -0.6547 4.4068 13 7 4.2748 -1.0976 5.0603 14 6 3.9791 -1.9435 6.0957 15 1 2.9584 -2.0481 6.4329 16 6 4.9912 -2.6666 6.7119 17 7 6.2351 -2.5388 6.3013 18 14 4.5877 -3.8210 8.1240 19 1 4.2875 -5.1730 7.5879 20 1 5.7494 -3.9006 9.0457 21 1 3.4053 -3.3072 8.8611 22 6 2.0324 -0.7105 -1.2305 23 6 1.7027 -2.0358 -1.4455 24 6 2.1583 -2.6882 -2.5756 25 6 2.9541 -2.0176 -3.4882 26 9 3.4045 -2.6562 -4.5903 27 6 3.2891 -0.6901 -3.2698 28 9 4.0663 -0.0337 -4.1589 29 6 2.8270 -0.0381 -2.1398 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.1817 0.6407 2.6554 34 1 1.1440 1.4844 3.4914 35 1 1.0028 1.5842 1.7199 36 1 1.4342 -0.8977 4.4306 37 1 2.4073 -1.9817 3.4077 38 1 4.5798 -1.2199 2.4840 39 1 4.8974 0.5605 2.6621 40 1 6.2523 -1.4529 4.2614 41 1 5.9589 0.2410 4.8507 42 1 6.9424 -3.0439 6.7321 43 1 1.0851 -2.5607 -0.7317 44 1 1.8966 -3.7222 -2.7446 45 1 3.0879 0.9957 -1.9681 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691679582.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:33 Heat of formation + Delta-G solvation = -53.578330 kcal Electronic energy + Delta-G solvation = -29605.834113 eV Core-core repulsion = 25260.939392 eV Total energy + Delta-G solvation = -4344.894721 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.51786 -49.60311 -41.55739 -40.02750 -39.12603 -36.47487 -35.01187 -34.15068 -31.92523 -30.62044 -29.83641 -29.23563 -27.59686 -25.54892 -25.23747 -24.30998 -24.21422 -22.56838 -20.83001 -20.12417 -18.98682 -18.69979 -18.41303 -17.97429 -17.57006 -17.34756 -17.13364 -16.70662 -16.39021 -16.03299 -16.00540 -15.69268 -15.51325 -15.11446 -15.01592 -14.80805 -14.41836 -14.14241 -13.94825 -13.88552 -13.60942 -13.42897 -13.23980 -12.93971 -12.90358 -12.77518 -12.57784 -12.52633 -12.38100 -12.25689 -12.23756 -11.89450 -11.77556 -11.57648 -11.25029 -10.82529 -10.61337 -10.04836 -9.65048 -9.52945 -8.85677 -7.86381 -5.20601 -0.13907 0.02246 1.44429 1.47622 1.55243 1.74833 1.99034 2.40209 2.52345 2.78102 3.25677 3.33686 3.41024 3.43570 3.55323 3.75924 3.94534 4.03608 4.09651 4.20899 4.26446 4.31027 4.36721 4.43379 4.52477 4.69299 4.74266 4.79648 4.84127 4.84565 4.89666 4.92570 4.95940 5.04347 5.04876 5.10132 5.14607 5.27801 5.33989 5.43891 5.55628 5.58918 5.72744 5.80107 5.97833 6.55953 6.92948 7.32319 7.64618 8.61246 9.30314 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014813 B = 0.002801 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.799971 B = 9993.354310 C =10683.438597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.060 4.060 3 H 0.138 0.862 4 C 0.509 3.491 5 O -0.572 6.572 6 N -0.604 5.604 7 C 0.064 3.936 8 C 0.131 3.869 9 C 0.137 3.863 10 H 0.063 0.937 11 C -0.131 4.131 12 C 0.147 3.853 13 N -0.629 5.629 14 C -0.225 4.225 15 H 0.088 0.912 16 C -0.073 4.073 17 N -0.957 5.957 18 Si 0.977 3.023 19 H -0.289 1.289 20 H -0.297 1.297 21 H -0.263 1.263 22 C -0.049 4.049 23 C -0.069 4.069 24 C -0.127 4.127 25 C 0.046 3.954 26 F -0.142 7.142 27 C 0.047 3.953 28 F -0.139 7.139 29 C -0.112 4.112 30 H 0.097 0.903 31 H 0.055 0.945 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.103 0.897 36 H 0.080 0.920 37 H 0.053 0.947 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.035 0.965 41 H 0.020 0.980 42 H 0.245 0.755 43 H 0.141 0.859 44 H 0.161 0.839 45 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.046 10.633 -17.818 26.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.081 4.081 3 H 0.156 0.844 4 C 0.297 3.703 5 O -0.451 6.451 6 N -0.336 5.336 7 C -0.077 4.077 8 C 0.006 3.994 9 C 0.031 3.969 10 H 0.080 0.920 11 C -0.169 4.169 12 C 0.022 3.978 13 N -0.356 5.356 14 C -0.354 4.354 15 H 0.106 0.894 16 C -0.266 4.266 17 N -0.606 5.606 18 Si 0.805 3.195 19 H -0.216 1.216 20 H -0.224 1.224 21 H -0.188 1.188 22 C -0.049 4.049 23 C -0.088 4.088 24 C -0.146 4.146 25 C 0.026 3.974 26 F -0.120 7.120 27 C 0.027 3.973 28 F -0.118 7.118 29 C -0.131 4.131 30 H 0.115 0.885 31 H 0.074 0.926 32 H 0.109 0.891 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.121 0.879 36 H 0.098 0.902 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.054 0.946 41 H 0.037 0.963 42 H 0.054 0.946 43 H 0.159 0.841 44 H 0.178 0.822 45 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -16.603 9.916 -17.686 26.206 hybrid contribution 1.027 -1.037 0.652 1.598 sum -15.576 8.879 -17.034 24.731 Atomic orbital electron populations 1.22125 0.89315 1.03706 1.05649 1.20346 0.99759 1.00782 0.87244 0.84414 1.21065 0.79628 0.84391 0.85182 1.90759 1.39152 1.28448 1.86713 1.47774 1.51047 1.30172 1.04601 1.22352 0.94653 0.85978 1.04752 1.21325 0.95324 0.96139 0.86584 1.22679 0.92259 0.93770 0.88241 0.92006 1.23476 0.96871 1.00647 0.95890 1.22229 0.90778 0.95407 0.89404 1.46302 1.03456 1.48852 1.37007 1.19414 0.93891 1.14871 1.07187 0.89427 1.25659 0.95385 1.02400 1.03137 1.70047 0.99888 1.45800 1.44899 0.85096 0.76998 0.78723 0.78644 1.21625 1.22393 1.18769 1.19449 0.96437 0.94103 0.94961 1.21052 0.98395 0.94017 0.95300 1.21247 0.97761 1.01961 0.93585 1.17962 1.01895 0.90482 0.87073 1.91486 1.87795 1.81665 1.51100 1.17809 0.97892 0.89971 0.91585 1.91495 1.72669 1.80644 1.66999 1.21155 0.97709 1.02447 0.91748 0.88498 0.92588 0.89134 0.90056 0.90705 0.87857 0.90172 0.92876 0.91580 0.90893 0.94611 0.96250 0.94581 0.84142 0.82172 0.81126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 8.63 71.98 0.62 -0.62 16 2 C -0.06 -0.86 2.09 -12.28 -0.03 -0.88 16 3 H 0.14 1.16 7.14 -2.39 -0.02 1.15 16 4 C 0.51 12.41 6.52 87.66 0.57 12.98 16 5 O -0.57 -20.16 13.00 -3.04 -0.04 -20.20 16 6 N -0.60 -13.69 2.79 -846.76 -2.36 -16.06 16 7 C 0.06 0.73 8.82 127.77 1.13 1.85 16 8 C 0.13 4.31 5.41 86.38 0.47 4.78 16 9 C 0.14 5.31 4.57 45.09 0.21 5.52 16 10 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 11 C -0.13 -5.29 7.25 31.25 0.23 -5.07 16 12 C 0.15 7.47 7.63 86.43 0.66 8.13 16 13 N -0.63 -32.70 3.58 -690.93 -2.48 -35.17 16 14 C -0.23 -12.69 10.51 84.04 0.88 -11.80 16 15 H 0.09 4.60 7.83 -2.91 -0.02 4.58 16 16 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 17 N -0.96 -60.10 11.32 21.65 0.25 -59.86 16 18 Si 0.98 46.64 29.55 68.60 2.03 48.67 16 19 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 20 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 21 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 22 C -0.05 -0.89 4.40 -19.86 -0.09 -0.97 16 23 C -0.07 -1.39 7.92 22.27 0.18 -1.21 16 24 C -0.13 -2.59 10.02 22.31 0.22 -2.36 16 25 C 0.05 1.08 7.31 22.41 0.16 1.24 16 26 F -0.14 -3.64 17.18 44.97 0.77 -2.87 16 27 C 0.05 1.07 7.31 22.41 0.16 1.24 16 28 F -0.14 -3.42 17.18 44.97 0.77 -2.64 16 29 C -0.11 -2.01 9.65 22.30 0.22 -1.80 16 30 H 0.10 0.47 4.56 -2.39 -0.01 0.46 16 31 H 0.05 0.59 7.40 -2.39 -0.02 0.57 16 32 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.08 0.61 7.07 -2.38 -0.02 0.59 16 34 H 0.07 0.89 8.09 -2.39 -0.02 0.87 16 35 H 0.10 0.55 5.87 -2.39 -0.01 0.54 16 36 H 0.08 2.41 8.11 -2.39 -0.02 2.39 16 37 H 0.05 2.21 7.26 -2.39 -0.02 2.19 16 38 H 0.07 2.99 6.56 -2.39 -0.02 2.97 16 39 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 40 H 0.04 2.08 6.99 -2.39 -0.02 2.06 16 41 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.25 15.01 8.31 -92.70 -0.77 14.24 16 43 H 0.14 2.70 7.51 -2.91 -0.02 2.67 16 44 H 0.16 2.61 8.06 -2.91 -0.02 2.58 16 45 H 0.17 2.06 7.94 -2.91 -0.02 2.04 16 Total: -1.00 -78.56 370.75 6.01 -72.55 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: 1.02 Total: 8.38 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: 6.06 Total: 7.21 kcal Atomic # 7 Polarization: -106.49 SS G_CDS: -4.59 Total: -111.09 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.04 Total: -20.20 kcal Atomic # 9 Polarization: -7.06 SS G_CDS: 1.55 Total: -5.51 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -78.56 6.01 -72.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691679582.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.969 kcal (2) G-P(sol) polarization free energy of solvation -78.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds