Wall clock time and date at job start Tue Mar 31 2020 20:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.87683 * 2 1 4 4 C 1.54321 * 109.88339 * 238.97842 * 2 1 3 5 5 H 1.08998 * 110.72216 * 336.93358 * 4 2 1 6 6 N 1.46496 * 110.72059 * 100.03010 * 4 2 1 7 7 C 1.34777 * 120.00271 * 202.56276 * 6 4 2 8 8 O 1.21278 * 119.99854 * 359.97438 * 7 6 4 9 9 C 1.50703 * 120.00161 * 179.97438 * 7 6 4 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 6 11 11 C 1.50703 * 109.46912 * 179.97438 * 10 9 7 12 12 C 1.38200 * 120.00092 * 100.00094 * 11 10 9 13 13 C 1.38429 * 120.00378 * 179.97438 * 12 11 10 14 14 F 1.35095 * 120.00240 * 179.97438 * 13 12 11 15 15 C 1.38474 * 119.99659 * 0.02562 * 13 12 11 16 16 C 1.38166 * 119.99999 * 359.95492 * 15 13 12 17 17 C 1.38428 * 119.99851 * 279.72467 * 11 10 9 18 18 F 1.35096 * 120.00078 * 0.02734 * 17 11 10 19 19 C 1.55166 * 103.10268 * 218.48132 * 4 2 1 20 20 C 1.55119 * 101.48426 * 35.28434 * 19 4 2 21 21 N 1.47032 * 109.87995 * 121.17332 * 2 1 3 22 22 C 1.36932 * 125.64403 * 298.38974 * 21 2 1 23 23 H 1.07996 * 120.00423 * 0.02562 * 22 21 2 24 24 C 1.38814 * 119.99702 * 179.97438 * 22 21 2 25 25 N 1.31618 * 119.99870 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 120.00260 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47074 * 89.99890 * 26 24 22 28 28 H 1.48498 * 109.47315 * 210.00688 * 26 24 22 29 29 H 1.48500 * 109.46780 * 330.00239 * 26 24 22 30 30 H 1.08996 * 109.47076 * 181.01718 * 1 2 3 31 31 H 1.09001 * 109.46847 * 301.01990 * 1 2 3 32 32 H 1.08998 * 109.46777 * 61.01774 * 1 2 3 33 33 H 0.97005 * 120.00266 * 22.55693 * 6 4 2 34 34 H 1.09001 * 109.46980 * 59.99654 * 9 7 6 35 35 H 1.08992 * 109.47158 * 299.99760 * 9 7 6 36 36 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 37 37 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 38 38 H 1.08002 * 120.00339 * 0.02562 * 12 11 10 39 39 H 1.08003 * 120.00028 * 179.97438 * 15 13 12 40 40 H 1.08007 * 119.99834 * 180.02562 * 16 15 13 41 41 H 1.08996 * 110.99934 * 153.48579 * 19 4 2 42 42 H 1.08999 * 111.00266 * 277.33748 * 19 4 2 43 43 H 1.09003 * 110.41449 * 204.29632 * 20 19 4 44 44 H 1.08998 * 110.20878 * 82.04200 * 20 19 4 45 45 H 0.97003 * 120.00168 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0548 -0.7479 -1.2437 5 1 1.3040 -1.4415 -1.6220 6 7 2.4555 0.1990 -2.2872 7 6 2.5056 -0.1979 -3.5742 8 8 2.2193 -1.3391 -3.8684 9 6 2.9172 0.7764 -4.6477 10 6 2.8915 0.0770 -6.0082 11 6 3.3025 1.0514 -7.0818 12 6 4.5932 1.0318 -7.5755 13 6 4.9707 1.9265 -8.5621 14 9 6.2325 1.9076 -9.0443 15 6 4.0551 2.8416 -9.0539 16 6 2.7647 2.8610 -8.5606 17 6 2.3857 1.9624 -7.5775 18 9 1.1226 1.9783 -7.0985 19 6 3.2870 -1.5169 -0.6977 20 6 2.8144 -1.8805 0.7344 21 7 2.0300 -0.7157 1.1830 22 6 1.8037 -0.3597 2.4858 23 1 1.2121 0.5151 2.7116 24 6 2.3341 -1.1238 3.5162 25 7 3.0548 -2.1902 3.2410 26 14 2.0250 -0.6387 5.2934 27 1 0.7848 -1.2963 5.7775 28 1 3.1731 -1.0694 6.1310 29 1 1.8715 0.8355 5.3845 30 1 -0.3633 -1.0275 0.0182 31 1 -0.3633 0.5296 0.8807 32 1 -0.3633 0.4979 -0.8990 33 1 2.6848 1.1117 -2.0519 34 1 3.9255 1.1370 -4.4439 35 1 2.2255 1.6186 -4.6586 36 1 3.5835 -0.7651 -5.9971 37 1 1.8834 -0.2838 -6.2123 38 1 5.3072 0.3178 -7.1923 39 1 4.3497 3.5399 -9.8233 40 1 2.0505 3.5745 -8.9445 41 1 3.4810 -2.4128 -1.2873 42 1 4.1664 -0.8737 -0.6662 43 1 3.6716 -2.0357 1.3896 44 1 2.1885 -2.7725 0.7092 45 1 3.4252 -2.7244 3.9610 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691765722.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:29 Heat of formation + Delta-G solvation = -86.192496 kcal Electronic energy + Delta-G solvation = -28463.642638 eV Core-core repulsion = 24117.333660 eV Total energy + Delta-G solvation = -4346.308977 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.33589 -49.28694 -39.91809 -39.25670 -37.60258 -34.42866 -34.00127 -32.06625 -30.94444 -30.38924 -29.93775 -28.54720 -25.75809 -24.20671 -23.96915 -23.38460 -21.83854 -20.50082 -20.14124 -19.52287 -18.06850 -17.68914 -17.62764 -16.87147 -16.74002 -16.25649 -15.86733 -15.69301 -15.43457 -14.83547 -14.75762 -14.67823 -14.06957 -14.02980 -13.88255 -13.49418 -13.41806 -13.09518 -12.81596 -12.77444 -12.68851 -12.15094 -12.01842 -11.92885 -11.57586 -11.40946 -11.28185 -11.15245 -10.87681 -10.84136 -10.55044 -10.42280 -10.10808 -9.79057 -9.74413 -9.60207 -9.47947 -8.94931 -8.69385 -8.61062 -6.89129 -5.66973 -3.09925 0.47809 0.54380 2.77864 2.86080 3.33076 3.38605 3.43817 3.45435 3.71095 3.74853 4.07876 4.21988 4.46422 4.50576 4.64001 4.73498 4.85513 4.95910 5.22486 5.30694 5.38118 5.39668 5.41876 5.48106 5.53335 5.54429 5.59077 5.62513 5.81730 5.85513 5.87651 6.11376 6.24499 6.30623 6.32717 6.34509 6.53216 6.60209 6.70485 6.86288 7.10437 7.50548 7.60987 7.72372 7.83802 8.32879 8.40650 9.19073 9.79976 10.43880 11.36324 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.024000 B = 0.001985 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.385570 B =14099.879971 C =14510.889764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.155 3.845 3 H 0.036 0.964 4 C 0.134 3.866 5 H 0.092 0.908 6 N -0.716 5.716 7 C 0.512 3.488 8 O -0.544 6.544 9 C -0.137 4.137 10 C -0.066 4.066 11 C -0.083 4.083 12 C -0.122 4.122 13 C 0.091 3.909 14 F -0.135 7.135 15 C -0.131 4.131 16 C -0.123 4.123 17 C 0.092 3.908 18 F -0.130 7.130 19 C -0.153 4.153 20 C 0.153 3.847 21 N -0.595 5.595 22 C -0.220 4.220 23 H 0.078 0.922 24 C -0.011 4.011 25 N -0.921 5.921 26 Si 0.914 3.086 27 H -0.289 1.289 28 H -0.290 1.290 29 H -0.282 1.282 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.038 0.962 33 H 0.398 0.602 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.148 0.852 39 H 0.145 0.855 40 H 0.146 0.854 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.109 0.891 44 H 0.014 0.986 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.169 10.672 -24.665 26.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.047 3.953 3 H 0.053 0.947 4 C 0.030 3.970 5 H 0.110 0.890 6 N -0.366 5.366 7 C 0.298 3.702 8 O -0.421 6.421 9 C -0.177 4.177 10 C -0.104 4.104 11 C -0.085 4.085 12 C -0.141 4.141 13 C 0.072 3.928 14 F -0.114 7.114 15 C -0.150 4.150 16 C -0.142 4.142 17 C 0.073 3.927 18 F -0.108 7.108 19 C -0.192 4.192 20 C 0.028 3.972 21 N -0.320 5.320 22 C -0.348 4.348 23 H 0.095 0.905 24 C -0.206 4.206 25 N -0.569 5.569 26 Si 0.745 3.255 27 H -0.216 1.216 28 H -0.217 1.217 29 H -0.207 1.207 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.232 0.768 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.165 0.835 39 H 0.162 0.838 40 H 0.164 0.836 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.127 0.873 44 H 0.032 0.968 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.017 9.768 -24.626 26.570 hybrid contribution -0.122 0.740 1.011 1.258 sum 1.896 10.508 -23.616 25.918 Atomic orbital electron populations 1.22243 0.97911 1.01437 0.99898 1.20994 0.92595 0.94766 0.86964 0.94694 1.22154 0.97622 0.90798 0.86440 0.89011 1.46096 1.68733 1.15130 1.06637 1.20452 0.77494 0.88783 0.83438 1.90701 1.49077 1.20096 1.82256 1.21636 1.03981 0.98909 0.93150 1.20321 1.04397 0.95856 0.89792 1.19856 0.92660 0.97242 0.98700 1.21005 0.96373 0.99799 0.96890 1.17673 0.80125 0.98319 0.96685 1.91529 1.37134 1.95857 1.86860 1.20994 0.92605 0.99582 1.01794 1.21009 0.96894 0.99400 0.96868 1.17576 0.80123 0.98172 0.96868 1.91536 1.36660 1.95688 1.86952 1.23426 0.96742 0.99308 0.99771 1.21987 0.97365 0.88374 0.89505 1.44487 1.59236 1.28235 1.00068 1.19018 1.27100 1.08225 0.80499 0.90460 1.24796 1.00366 0.97406 0.98076 1.69795 1.39069 1.17855 1.30199 0.86077 0.77255 0.77708 0.84473 1.21642 1.21669 1.20723 0.92931 0.92729 0.94342 0.76787 0.88615 0.88770 0.89105 0.89183 0.83470 0.83763 0.83625 0.91999 0.92058 0.87327 0.96809 0.93684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 9.13 37.16 0.34 -2.53 16 2 C 0.15 3.07 3.48 -66.95 -0.23 2.84 16 3 H 0.04 0.67 7.70 -51.93 -0.40 0.27 16 4 C 0.13 2.41 2.79 -66.09 -0.18 2.23 16 5 H 0.09 1.79 7.33 -51.93 -0.38 1.41 16 6 N -0.72 -10.06 5.19 -52.03 -0.27 -10.33 16 7 C 0.51 7.06 7.83 -10.98 -0.09 6.97 16 8 O -0.54 -9.58 15.67 5.56 0.09 -9.50 16 9 C -0.14 -1.29 5.68 -27.88 -0.16 -1.45 16 10 C -0.07 -0.62 4.36 -27.88 -0.12 -0.74 16 11 C -0.08 -0.69 5.14 -104.56 -0.54 -1.22 16 12 C -0.12 -0.92 9.65 -39.52 -0.38 -1.30 16 13 C 0.09 0.69 7.30 -39.42 -0.29 0.40 16 14 F -0.14 -1.15 17.27 2.25 0.04 -1.11 16 15 C -0.13 -0.80 10.02 -39.52 -0.40 -1.20 16 16 C -0.12 -0.78 10.02 -39.52 -0.40 -1.18 16 17 C 0.09 0.76 7.24 -39.42 -0.29 0.47 16 18 F -0.13 -1.24 16.65 2.25 0.04 -1.21 16 19 C -0.15 -3.00 6.79 -24.46 -0.17 -3.17 16 20 C 0.15 3.70 5.89 -2.42 -0.01 3.69 16 21 N -0.60 -14.71 3.13 -162.44 -0.51 -15.22 16 22 C -0.22 -5.94 9.89 -15.06 -0.15 -6.09 16 23 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 24 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 25 N -0.92 -26.53 10.09 55.49 0.56 -25.97 16 26 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 29 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.05 1.04 8.04 -51.93 -0.42 0.62 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.40 4.59 8.34 -40.82 -0.34 4.24 16 34 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.09 0.86 7.96 -51.93 -0.41 0.45 16 37 H 0.09 0.96 7.89 -51.93 -0.41 0.55 16 38 H 0.15 0.93 8.04 -52.49 -0.42 0.51 16 39 H 0.14 0.57 8.06 -52.48 -0.42 0.15 16 40 H 0.15 0.62 8.06 -52.48 -0.42 0.19 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.11 2.95 5.87 -51.93 -0.31 2.64 16 44 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 379.99 15.07 5.73 5.73 Total: -1.00 -31.52 379.99 -8.95 -40.47 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -6.44 Total: 3.06 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -3.15 Total: -2.67 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: -0.22 Total: -51.52 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.50 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.08 Total: -2.32 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.52 -8.95 -40.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691765722.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.724 kcal (2) G-P(sol) polarization free energy of solvation -31.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds