Wall clock time and date at job start Tue Mar 31 2020 20:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.87683 * 2 1 4 4 C 1.54321 * 109.88339 * 238.97842 * 2 1 3 5 5 H 1.08998 * 110.72216 * 336.93358 * 4 2 1 6 6 N 1.46496 * 110.72059 * 100.03010 * 4 2 1 7 7 C 1.34777 * 120.00271 * 202.56276 * 6 4 2 8 8 O 1.21278 * 119.99854 * 359.97438 * 7 6 4 9 9 C 1.50703 * 120.00161 * 179.97438 * 7 6 4 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 6 11 11 C 1.50703 * 109.46912 * 179.97438 * 10 9 7 12 12 C 1.38200 * 120.00092 * 100.00094 * 11 10 9 13 13 C 1.38429 * 120.00378 * 179.97438 * 12 11 10 14 14 F 1.35095 * 120.00240 * 179.97438 * 13 12 11 15 15 C 1.38474 * 119.99659 * 0.02562 * 13 12 11 16 16 C 1.38166 * 119.99999 * 359.95492 * 15 13 12 17 17 C 1.38428 * 119.99851 * 279.72467 * 11 10 9 18 18 F 1.35096 * 120.00078 * 0.02734 * 17 11 10 19 19 C 1.55166 * 103.10268 * 218.48132 * 4 2 1 20 20 C 1.55119 * 101.48426 * 35.28434 * 19 4 2 21 21 N 1.47032 * 109.87995 * 121.17332 * 2 1 3 22 22 C 1.36932 * 125.64403 * 298.38974 * 21 2 1 23 23 H 1.07996 * 120.00423 * 0.02562 * 22 21 2 24 24 C 1.38814 * 119.99702 * 179.97438 * 22 21 2 25 25 N 1.31618 * 119.99870 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 120.00260 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47074 * 89.99890 * 26 24 22 28 28 H 1.48498 * 109.47315 * 210.00688 * 26 24 22 29 29 H 1.48500 * 109.46780 * 330.00239 * 26 24 22 30 30 H 1.08996 * 109.47076 * 181.01718 * 1 2 3 31 31 H 1.09001 * 109.46847 * 301.01990 * 1 2 3 32 32 H 1.08998 * 109.46777 * 61.01774 * 1 2 3 33 33 H 0.97005 * 120.00266 * 22.55693 * 6 4 2 34 34 H 1.09001 * 109.46980 * 59.99654 * 9 7 6 35 35 H 1.08992 * 109.47158 * 299.99760 * 9 7 6 36 36 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 37 37 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 38 38 H 1.08002 * 120.00339 * 0.02562 * 12 11 10 39 39 H 1.08003 * 120.00028 * 179.97438 * 15 13 12 40 40 H 1.08007 * 119.99834 * 180.02562 * 16 15 13 41 41 H 1.08996 * 110.99934 * 153.48579 * 19 4 2 42 42 H 1.08999 * 111.00266 * 277.33748 * 19 4 2 43 43 H 1.09003 * 110.41449 * 204.29632 * 20 19 4 44 44 H 1.08998 * 110.20878 * 82.04200 * 20 19 4 45 45 H 0.97003 * 120.00168 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0548 -0.7479 -1.2437 5 1 1.3040 -1.4415 -1.6220 6 7 2.4555 0.1990 -2.2872 7 6 2.5056 -0.1979 -3.5742 8 8 2.2193 -1.3391 -3.8684 9 6 2.9172 0.7764 -4.6477 10 6 2.8915 0.0770 -6.0082 11 6 3.3025 1.0514 -7.0818 12 6 4.5932 1.0318 -7.5755 13 6 4.9707 1.9265 -8.5621 14 9 6.2325 1.9076 -9.0443 15 6 4.0551 2.8416 -9.0539 16 6 2.7647 2.8610 -8.5606 17 6 2.3857 1.9624 -7.5775 18 9 1.1226 1.9783 -7.0985 19 6 3.2870 -1.5169 -0.6977 20 6 2.8144 -1.8805 0.7344 21 7 2.0300 -0.7157 1.1830 22 6 1.8037 -0.3597 2.4858 23 1 1.2121 0.5151 2.7116 24 6 2.3341 -1.1238 3.5162 25 7 3.0548 -2.1902 3.2410 26 14 2.0250 -0.6387 5.2934 27 1 0.7848 -1.2963 5.7775 28 1 3.1731 -1.0694 6.1310 29 1 1.8715 0.8355 5.3845 30 1 -0.3633 -1.0275 0.0182 31 1 -0.3633 0.5296 0.8807 32 1 -0.3633 0.4979 -0.8990 33 1 2.6848 1.1117 -2.0519 34 1 3.9255 1.1370 -4.4439 35 1 2.2255 1.6186 -4.6586 36 1 3.5835 -0.7651 -5.9971 37 1 1.8834 -0.2838 -6.2123 38 1 5.3072 0.3178 -7.1923 39 1 4.3497 3.5399 -9.8233 40 1 2.0505 3.5745 -8.9445 41 1 3.4810 -2.4128 -1.2873 42 1 4.1664 -0.8737 -0.6662 43 1 3.6716 -2.0357 1.3896 44 1 2.1885 -2.7725 0.7092 45 1 3.4252 -2.7244 3.9610 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691765722.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:28 Heat of formation + Delta-G solvation = -103.796590 kcal Electronic energy + Delta-G solvation = -28464.406009 eV Core-core repulsion = 24117.333660 eV Total energy + Delta-G solvation = -4347.072348 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.93041 -49.92475 -41.06704 -39.96498 -39.14505 -35.61399 -35.09783 -33.81878 -32.07035 -31.57893 -30.82252 -30.10057 -26.96388 -25.92429 -25.30497 -23.94788 -22.61916 -22.04283 -21.53689 -21.00625 -18.75614 -18.62395 -18.36685 -18.22800 -17.77907 -17.37673 -16.83872 -16.62617 -16.42185 -16.30953 -15.75902 -15.49182 -15.36660 -15.30729 -14.89603 -14.58102 -14.40706 -14.14285 -14.01266 -13.73804 -13.67702 -13.51360 -13.41883 -13.23396 -12.92774 -12.75771 -12.64173 -12.57994 -12.21794 -12.09240 -12.06308 -11.97071 -11.93052 -11.57529 -11.44061 -10.88572 -10.73075 -10.11341 -9.98441 -9.53282 -8.89915 -7.74656 -5.19749 -0.08573 0.03089 1.48366 1.49928 1.58342 1.67937 2.13654 2.37791 2.53007 3.14030 3.19737 3.35689 3.46198 3.60461 3.66212 3.86273 3.88994 3.96247 4.00411 4.09514 4.19671 4.22044 4.25032 4.50264 4.59827 4.63114 4.70684 4.74435 4.77923 4.81348 4.95882 4.97740 5.02259 5.04030 5.05981 5.12401 5.16399 5.23477 5.37207 5.50299 5.60073 5.64928 5.79028 5.80403 6.30784 6.61359 7.11394 7.30524 7.79207 8.42823 9.27218 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.024000 B = 0.001985 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.385570 B =14099.879971 C =14510.889764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.150 3.850 3 H 0.054 0.946 4 C 0.152 3.848 5 H 0.076 0.924 6 N -0.706 5.706 7 C 0.512 3.488 8 O -0.584 6.584 9 C -0.125 4.125 10 C -0.063 4.063 11 C -0.089 4.089 12 C -0.124 4.124 13 C 0.079 3.921 14 F -0.143 7.143 15 C -0.122 4.122 16 C -0.117 4.117 17 C 0.078 3.922 18 F -0.141 7.141 19 C -0.138 4.138 20 C 0.157 3.843 21 N -0.614 5.614 22 C -0.226 4.226 23 H 0.086 0.914 24 C -0.071 4.071 25 N -0.951 5.951 26 Si 0.979 3.021 27 H -0.291 1.291 28 H -0.296 1.296 29 H -0.266 1.266 30 H 0.033 0.967 31 H 0.047 0.953 32 H 0.070 0.930 33 H 0.414 0.586 34 H 0.121 0.879 35 H 0.112 0.888 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.155 0.845 39 H 0.169 0.831 40 H 0.169 0.831 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.077 0.923 44 H -0.017 1.017 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.133 13.492 -26.340 29.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.043 3.957 3 H 0.071 0.929 4 C 0.046 3.954 5 H 0.094 0.906 6 N -0.358 5.358 7 C 0.301 3.699 8 O -0.464 6.464 9 C -0.164 4.164 10 C -0.100 4.100 11 C -0.090 4.090 12 C -0.143 4.143 13 C 0.060 3.940 14 F -0.121 7.121 15 C -0.141 4.141 16 C -0.136 4.136 17 C 0.059 3.941 18 F -0.119 7.119 19 C -0.177 4.177 20 C 0.031 3.969 21 N -0.339 5.339 22 C -0.355 4.355 23 H 0.103 0.897 24 C -0.263 4.263 25 N -0.601 5.601 26 Si 0.807 3.193 27 H -0.218 1.218 28 H -0.223 1.223 29 H -0.191 1.191 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.252 0.748 34 H 0.139 0.861 35 H 0.130 0.870 36 H 0.104 0.896 37 H 0.091 0.909 38 H 0.173 0.827 39 H 0.186 0.814 40 H 0.187 0.813 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.001 0.999 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 1.972 12.648 -26.335 29.281 hybrid contribution -0.124 -0.126 1.435 1.446 sum 1.849 12.523 -24.899 27.932 Atomic orbital electron populations 1.22130 0.96678 1.00619 1.01203 1.21211 0.93453 0.95145 0.85861 0.92869 1.21684 0.96093 0.90920 0.86735 0.90551 1.45912 1.68656 1.15223 1.06005 1.21205 0.76140 0.88872 0.83714 1.90695 1.50727 1.22222 1.82798 1.21631 1.05676 0.97898 0.91207 1.20213 1.03335 0.96140 0.90345 1.19685 0.93031 0.97359 0.98892 1.21081 0.96270 0.99997 0.96913 1.17862 0.80146 0.98942 0.97040 1.91513 1.37695 1.95953 1.86979 1.21277 0.92048 0.99144 1.01610 1.21257 0.97354 0.99060 0.95881 1.17809 0.79710 0.98909 0.97689 1.91509 1.37378 1.95820 1.87223 1.23219 0.97765 0.99938 0.96798 1.21709 0.95683 0.87748 0.91750 1.44729 1.59714 1.28579 1.00892 1.19393 1.26230 1.08099 0.81733 0.89657 1.25628 1.00892 0.97782 1.01987 1.70046 1.40378 1.18990 1.30727 0.85068 0.76471 0.78045 0.79694 1.21806 1.22274 1.19094 0.94749 0.93372 0.91072 0.74848 0.86064 0.87008 0.89615 0.90887 0.82725 0.81362 0.81331 0.91715 0.91051 0.90461 0.99946 0.94469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.24 9.13 71.98 0.66 -4.58 16 2 C 0.15 5.77 3.48 45.34 0.16 5.93 16 3 H 0.05 1.89 7.70 -2.39 -0.02 1.88 16 4 C 0.15 5.30 2.79 46.18 0.13 5.43 16 5 H 0.08 2.96 7.33 -2.39 -0.02 2.94 16 6 N -0.71 -18.25 5.19 -436.92 -2.27 -20.51 16 7 C 0.51 13.20 7.83 87.66 0.69 13.89 16 8 O -0.58 -20.27 15.67 -3.02 -0.05 -20.32 16 9 C -0.12 -2.04 5.68 29.85 0.17 -1.87 16 10 C -0.06 -1.10 4.36 29.85 0.13 -0.97 16 11 C -0.09 -1.30 5.14 -19.83 -0.10 -1.41 16 12 C -0.12 -1.65 9.65 22.31 0.22 -1.43 16 13 C 0.08 1.04 7.30 22.37 0.16 1.20 16 14 F -0.14 -2.19 17.27 44.97 0.78 -1.41 16 15 C -0.12 -1.14 10.02 22.31 0.22 -0.92 16 16 C -0.12 -1.15 10.02 22.31 0.22 -0.93 16 17 C 0.08 1.13 7.24 22.37 0.16 1.29 16 18 F -0.14 -2.46 16.65 44.97 0.75 -1.71 16 19 C -0.14 -5.40 6.79 32.06 0.22 -5.18 16 20 C 0.16 7.86 5.89 86.93 0.51 8.37 16 21 N -0.61 -30.58 3.13 -667.84 -2.09 -32.67 16 22 C -0.23 -12.22 9.89 84.03 0.83 -11.38 16 23 H 0.09 4.38 7.83 -2.91 -0.02 4.35 16 24 C -0.07 -3.96 5.49 84.86 0.47 -3.50 16 25 N -0.95 -56.67 10.09 21.65 0.22 -56.45 16 26 Si 0.98 45.20 29.55 68.60 2.03 47.23 16 27 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 28 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 29 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 30 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.05 1.76 8.04 -2.39 -0.02 1.74 16 32 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.41 8.16 8.34 -92.70 -0.77 7.39 16 34 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.09 1.57 7.96 -2.39 -0.02 1.55 16 37 H 0.07 1.53 7.89 -2.39 -0.02 1.51 16 38 H 0.16 1.72 8.04 -2.91 -0.02 1.70 16 39 H 0.17 0.72 8.06 -2.91 -0.02 0.70 16 40 H 0.17 0.84 8.06 -2.91 -0.02 0.81 16 41 H 0.06 2.49 8.14 -2.39 -0.02 2.48 16 42 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 43 H 0.08 4.39 5.87 -2.39 -0.01 4.37 16 44 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 45 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -70.13 379.99 4.45 -65.68 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 0.24 Total: 16.22 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: 4.84 Total: 3.94 kcal Atomic # 7 Polarization: -105.49 SS G_CDS: -4.14 Total: -109.63 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.05 Total: -20.32 kcal Atomic # 9 Polarization: -4.65 SS G_CDS: 1.53 Total: -3.12 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -70.13 4.45 -65.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691765722.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.112 kcal (2) G-P(sol) polarization free energy of solvation -70.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds