Wall clock time and date at job start Tue Mar 31 2020 21:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46778 * 2 1 4 4 C 1.50700 * 109.47361 * 120.00491 * 2 1 3 5 5 O 1.21275 * 120.00474 * 87.34291 * 4 2 1 6 6 N 1.34778 * 119.99779 * 267.34095 * 4 2 1 7 7 C 1.47425 * 125.64733 * 5.59120 * 6 4 2 8 8 C 1.54915 * 104.83231 * 155.83625 * 7 6 4 9 9 C 1.55152 * 101.58127 * 37.00781 * 8 7 6 10 10 C 1.47017 * 125.64993 * 185.28188 * 6 4 2 11 11 H 1.08999 * 109.88659 * 300.51838 * 10 6 4 12 12 C 1.53006 * 109.87914 * 61.68227 * 10 6 4 13 13 N 1.46498 * 109.46830 * 286.12571 * 12 10 6 14 14 C 1.36939 * 120.00066 * 172.40482 * 13 12 10 15 15 H 1.08001 * 119.99918 * 0.02562 * 14 13 12 16 16 C 1.38815 * 120.00183 * 180.02562 * 14 13 12 17 17 N 1.31616 * 119.99879 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00062 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46869 * 59.99959 * 18 16 14 20 20 H 1.48493 * 109.47102 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47322 * 300.00284 * 18 16 14 22 22 C 1.50701 * 109.47275 * 240.00655 * 2 1 3 23 23 C 1.38236 * 119.98461 * 299.99848 * 22 2 1 24 24 C 1.38181 * 120.05091 * 179.97438 * 23 22 2 25 25 C 1.38498 * 120.02402 * 0.02562 * 24 23 22 26 26 F 1.35103 * 120.00834 * 179.97438 * 25 24 23 27 27 C 1.38398 * 119.97530 * 0.02562 * 25 24 23 28 28 C 1.38442 * 119.94722 * 359.72320 * 27 25 24 29 29 F 1.35099 * 120.01063 * 180.27217 * 28 27 25 30 30 H 1.09003 * 109.47062 * 300.83100 * 1 2 3 31 31 H 1.08999 * 109.47350 * 60.83458 * 1 2 3 32 32 H 1.09004 * 109.46971 * 180.83535 * 1 2 3 33 33 H 1.09006 * 110.37323 * 274.67305 * 7 6 4 34 34 H 1.09000 * 110.37316 * 36.88915 * 7 6 4 35 35 H 1.09003 * 111.00347 * 155.08335 * 8 7 6 36 36 H 1.08998 * 110.99968 * 278.93605 * 8 7 6 37 37 H 1.09000 * 110.72211 * 82.86056 * 9 8 7 38 38 H 1.08997 * 110.72429 * 206.13625 * 9 8 7 39 39 H 1.09000 * 109.47273 * 46.12555 * 12 10 6 40 40 H 1.09004 * 109.47138 * 166.13241 * 12 10 6 41 41 H 0.96997 * 120.00272 * 352.40502 * 13 12 10 42 42 H 0.96999 * 120.00217 * 179.97438 * 17 16 14 43 43 H 1.08006 * 119.97185 * 359.97153 * 23 22 2 44 44 H 1.08004 * 119.98889 * 179.97438 * 24 23 22 45 45 H 1.07999 * 120.02218 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.1887 -1.9130 1.2150 6 7 2.3081 -0.0095 2.3480 7 6 2.0558 1.4298 2.5435 8 6 1.9409 1.6074 4.0782 9 6 3.0098 0.6053 4.5885 10 6 2.9044 -0.5547 3.5762 11 1 2.2688 -1.3436 3.9784 12 6 4.2989 -1.1082 3.2763 13 7 4.1759 -2.3703 2.5427 14 6 5.2917 -2.9746 2.0279 15 1 6.2624 -2.5210 2.1630 16 6 5.1750 -4.1703 1.3323 17 7 3.9920 -4.7233 1.1680 18 14 6.6970 -4.9942 0.6294 19 1 7.6418 -5.3105 1.7306 20 1 6.3058 -6.2481 -0.0633 21 1 7.3533 -4.0788 -0.3383 22 6 2.0324 -0.7103 -1.2305 23 6 1.6983 -2.0337 -1.4491 24 6 2.1577 -2.6862 -2.5772 25 6 2.9541 -2.0148 -3.4900 26 9 3.4036 -2.6531 -4.5927 27 6 3.2901 -0.6900 -3.2717 28 6 2.8249 -0.0359 -2.1437 29 9 3.1476 1.2588 -1.9321 30 1 -0.3633 0.5267 0.8825 31 1 -0.3634 0.5008 -0.8973 32 1 -0.3633 -1.0276 0.0150 33 1 2.8878 2.0172 2.1550 34 1 1.1258 1.7218 2.0556 35 1 2.1888 2.6270 4.3732 36 1 0.9469 1.3312 4.4300 37 1 4.0026 1.0545 4.5637 38 1 2.7665 0.2603 5.5935 39 1 4.8530 -0.3895 2.6725 40 1 4.8298 -1.2823 4.2122 41 1 3.3041 -2.7779 2.4216 42 1 3.9104 -5.5586 0.6816 43 1 1.0777 -2.5582 -0.7375 44 1 1.8964 -3.7203 -2.7468 45 1 3.9114 -0.1659 -3.9828 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699766981.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:59 Heat of formation + Delta-G solvation = -71.427552 kcal Electronic energy + Delta-G solvation = -31062.772526 eV Core-core repulsion = 26717.103805 eV Total energy + Delta-G solvation = -4345.668721 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.88384 -48.78401 -40.15315 -38.68888 -36.95091 -34.45177 -33.60073 -31.35880 -31.17779 -30.51569 -28.97353 -28.61297 -25.11122 -24.64231 -23.15526 -22.84882 -22.11364 -21.30994 -20.38137 -18.45572 -18.04450 -17.50248 -16.85637 -16.40053 -16.15219 -15.76693 -15.59011 -15.33311 -15.12384 -14.66027 -14.34853 -14.24112 -14.14677 -13.77381 -13.46536 -13.36194 -12.93044 -12.89943 -12.84635 -12.58240 -12.35395 -12.06661 -11.85325 -11.63389 -11.51231 -11.40679 -11.19766 -11.10718 -11.01477 -11.00206 -10.68565 -10.58577 -10.46988 -9.92891 -9.49997 -8.93819 -8.77420 -8.65444 -8.36614 -8.06844 -6.57750 -5.46422 -2.73371 1.15041 1.30462 3.17439 3.35364 3.55549 3.59946 3.60488 3.68983 4.06730 4.53441 4.56032 4.62484 4.66705 4.77558 4.83224 4.95662 5.02636 5.15795 5.23208 5.27422 5.40364 5.44161 5.46157 5.57994 5.64272 5.75653 5.78476 5.80678 5.89466 5.97416 6.02133 6.05276 6.10239 6.13965 6.17380 6.25992 6.40911 6.48857 6.55210 6.64289 6.85816 6.99372 7.02979 7.89014 8.01212 8.64999 8.87018 9.84460 10.49326 10.91144 11.73713 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007797 B = 0.006563 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3590.367425 B = 4265.443720 C = 6889.752741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.063 4.063 3 H 0.095 0.905 4 C 0.520 3.480 5 O -0.456 6.456 6 N -0.617 5.617 7 C 0.099 3.901 8 C -0.131 4.131 9 C -0.124 4.124 10 C 0.131 3.869 11 H 0.073 0.927 12 C 0.145 3.855 13 N -0.721 5.721 14 C -0.237 4.237 15 H 0.058 0.942 16 C -0.006 4.006 17 N -0.912 5.912 18 Si 0.891 3.109 19 H -0.289 1.289 20 H -0.292 1.292 21 H -0.290 1.290 22 C -0.115 4.115 23 C -0.008 4.008 24 C -0.156 4.156 25 C 0.127 3.873 26 F -0.137 7.137 27 C -0.200 4.200 28 C 0.132 3.868 29 F -0.135 7.135 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.017 0.983 40 H 0.016 0.984 41 H 0.401 0.599 42 H 0.248 0.752 43 H 0.151 0.849 44 H 0.141 0.859 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.187 15.177 -1.825 18.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.085 4.085 3 H 0.113 0.887 4 C 0.305 3.695 5 O -0.325 6.325 6 N -0.355 5.355 7 C -0.024 4.024 8 C -0.169 4.169 9 C -0.163 4.163 10 C 0.028 3.972 11 H 0.091 0.909 12 C 0.015 3.985 13 N -0.373 5.373 14 C -0.369 4.369 15 H 0.076 0.924 16 C -0.203 4.203 17 N -0.560 5.560 18 Si 0.723 3.277 19 H -0.216 1.216 20 H -0.218 1.218 21 H -0.217 1.217 22 C -0.116 4.116 23 C -0.026 4.026 24 C -0.175 4.175 25 C 0.107 3.893 26 F -0.115 7.115 27 C -0.219 4.219 28 C 0.112 3.888 29 F -0.113 7.113 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.035 0.965 40 H 0.033 0.967 41 H 0.243 0.757 42 H 0.058 0.942 43 H 0.169 0.831 44 H 0.159 0.841 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -9.968 14.382 -2.022 17.615 hybrid contribution 1.197 -0.359 -0.672 1.420 sum -8.771 14.023 -2.695 16.758 Atomic orbital electron populations 1.21729 0.91751 1.03380 1.02358 1.20057 0.97675 0.99864 0.90869 0.88727 1.19884 0.78879 0.87931 0.82757 1.90820 1.47719 1.12718 1.81285 1.48418 1.63822 1.08953 1.14285 1.22256 1.00619 0.83055 0.96508 1.22745 0.99797 0.99801 0.94595 1.22631 0.99623 0.95481 0.98568 1.21852 0.96057 0.95383 0.83898 0.90896 1.21008 0.92179 0.90110 0.95154 1.42854 1.08891 1.21450 1.64080 1.19068 0.87498 1.02667 1.27692 0.92389 1.24611 0.95828 0.98298 1.01553 1.69725 1.20663 1.19501 1.46131 0.86516 0.83267 0.78963 0.78921 1.21629 1.21819 1.21747 1.19407 1.00993 0.95509 0.95719 1.20848 0.95942 0.91764 0.94051 1.21216 1.00103 1.01358 0.94830 1.17320 0.96953 0.90254 0.84746 1.91499 1.87493 1.81679 1.50843 1.20800 1.06377 0.94747 1.00017 1.17027 0.97831 0.78848 0.95073 1.91466 1.91137 1.34007 1.94732 0.91845 0.91498 0.91293 0.91877 0.91126 0.90226 0.90792 0.90433 0.90270 0.96492 0.96684 0.75690 0.94201 0.83112 0.84097 0.83915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.48 8.98 37.16 0.33 -1.15 16 2 C -0.06 -0.91 2.27 -92.92 -0.21 -1.12 16 3 H 0.09 1.25 6.25 -51.93 -0.32 0.92 16 4 C 0.52 9.43 6.58 -10.99 -0.07 9.36 16 5 O -0.46 -10.49 11.00 5.56 0.06 -10.43 16 6 N -0.62 -9.78 3.07 -163.02 -0.50 -10.28 16 7 C 0.10 1.10 6.19 -2.53 -0.02 1.08 16 8 C -0.13 -1.21 7.08 -24.58 -0.17 -1.38 16 9 C -0.12 -1.46 6.45 -24.90 -0.16 -1.62 16 10 C 0.13 2.20 3.05 -66.96 -0.20 2.00 16 11 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 12 C 0.14 3.12 5.62 -4.04 -0.02 3.09 16 13 N -0.72 -19.58 4.39 -59.90 -0.26 -19.84 16 14 C -0.24 -7.13 9.99 -15.06 -0.15 -7.28 16 15 H 0.06 1.71 7.83 -52.49 -0.41 1.30 16 16 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 17 N -0.91 -28.65 13.06 55.49 0.72 -27.93 16 18 Si 0.89 23.84 29.55 -169.99 -5.02 18.82 16 19 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 20 H -0.29 -7.81 7.11 56.52 0.40 -7.41 16 21 H -0.29 -7.76 7.11 56.52 0.40 -7.35 16 22 C -0.11 -1.87 4.71 -104.55 -0.49 -2.36 16 23 C -0.01 -0.14 7.98 -39.60 -0.32 -0.45 16 24 C -0.16 -2.59 10.02 -39.51 -0.40 -2.99 16 25 C 0.13 2.07 7.30 -39.43 -0.29 1.78 16 26 F -0.14 -2.21 17.27 2.25 0.04 -2.17 16 27 C -0.20 -3.08 10.01 -39.45 -0.39 -3.48 16 28 C 0.13 2.10 7.24 -39.43 -0.29 1.81 16 29 F -0.13 -2.04 16.19 2.25 0.04 -2.01 16 30 H 0.06 0.60 7.54 -51.93 -0.39 0.20 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.81 7.42 -51.93 -0.39 0.42 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.64 7.13 -51.93 -0.37 0.27 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.89 7.86 -51.93 -0.41 0.48 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.02 0.33 8.11 -51.93 -0.42 -0.09 16 41 H 0.40 11.50 4.85 -40.82 -0.20 11.30 16 42 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 43 H 0.15 2.62 6.72 -52.48 -0.35 2.27 16 44 H 0.14 2.14 8.06 -52.48 -0.42 1.72 16 45 H 0.14 1.88 8.06 -52.49 -0.42 1.45 16 LS Contribution 369.94 15.07 5.57 5.57 Total: -1.00 -35.08 369.94 -8.50 -43.58 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -6.20 Total: 7.67 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -2.95 Total: -2.98 kcal Atomic # 7 Polarization: -58.01 SS G_CDS: -0.04 Total: -58.05 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.06 Total: -10.43 kcal Atomic # 9 Polarization: -4.25 SS G_CDS: 0.08 Total: -4.17 kcal Atomic # 14 Polarization: 23.84 SS G_CDS: -5.02 Total: 18.82 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.08 -8.50 -43.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699766981.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.847 kcal (2) G-P(sol) polarization free energy of solvation -35.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds