Wall clock time and date at job start Tue Mar 31 2020 21:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46778 * 2 1 4 4 C 1.50700 * 109.47361 * 120.00491 * 2 1 3 5 5 O 1.21275 * 120.00474 * 87.34291 * 4 2 1 6 6 N 1.34778 * 119.99779 * 267.34095 * 4 2 1 7 7 C 1.47425 * 125.64733 * 5.59120 * 6 4 2 8 8 C 1.54915 * 104.83231 * 155.83625 * 7 6 4 9 9 C 1.55152 * 101.58127 * 37.00781 * 8 7 6 10 10 C 1.47017 * 125.64993 * 185.28188 * 6 4 2 11 11 H 1.08999 * 109.88659 * 300.51838 * 10 6 4 12 12 C 1.53006 * 109.87914 * 61.68227 * 10 6 4 13 13 N 1.46498 * 109.46830 * 286.12571 * 12 10 6 14 14 C 1.36939 * 120.00066 * 172.40482 * 13 12 10 15 15 H 1.08001 * 119.99918 * 0.02562 * 14 13 12 16 16 C 1.38815 * 120.00183 * 180.02562 * 14 13 12 17 17 N 1.31616 * 119.99879 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00062 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46869 * 59.99959 * 18 16 14 20 20 H 1.48493 * 109.47102 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47322 * 300.00284 * 18 16 14 22 22 C 1.50701 * 109.47275 * 240.00655 * 2 1 3 23 23 C 1.38236 * 119.98461 * 299.99848 * 22 2 1 24 24 C 1.38181 * 120.05091 * 179.97438 * 23 22 2 25 25 C 1.38498 * 120.02402 * 0.02562 * 24 23 22 26 26 F 1.35103 * 120.00834 * 179.97438 * 25 24 23 27 27 C 1.38398 * 119.97530 * 0.02562 * 25 24 23 28 28 C 1.38442 * 119.94722 * 359.72320 * 27 25 24 29 29 F 1.35099 * 120.01063 * 180.27217 * 28 27 25 30 30 H 1.09003 * 109.47062 * 300.83100 * 1 2 3 31 31 H 1.08999 * 109.47350 * 60.83458 * 1 2 3 32 32 H 1.09004 * 109.46971 * 180.83535 * 1 2 3 33 33 H 1.09006 * 110.37323 * 274.67305 * 7 6 4 34 34 H 1.09000 * 110.37316 * 36.88915 * 7 6 4 35 35 H 1.09003 * 111.00347 * 155.08335 * 8 7 6 36 36 H 1.08998 * 110.99968 * 278.93605 * 8 7 6 37 37 H 1.09000 * 110.72211 * 82.86056 * 9 8 7 38 38 H 1.08997 * 110.72429 * 206.13625 * 9 8 7 39 39 H 1.09000 * 109.47273 * 46.12555 * 12 10 6 40 40 H 1.09004 * 109.47138 * 166.13241 * 12 10 6 41 41 H 0.96997 * 120.00272 * 352.40502 * 13 12 10 42 42 H 0.96999 * 120.00217 * 179.97438 * 17 16 14 43 43 H 1.08006 * 119.97185 * 359.97153 * 23 22 2 44 44 H 1.08004 * 119.98889 * 179.97438 * 24 23 22 45 45 H 1.07999 * 120.02218 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.1887 -1.9130 1.2150 6 7 2.3081 -0.0095 2.3480 7 6 2.0558 1.4298 2.5435 8 6 1.9409 1.6074 4.0782 9 6 3.0098 0.6053 4.5885 10 6 2.9044 -0.5547 3.5762 11 1 2.2688 -1.3436 3.9784 12 6 4.2989 -1.1082 3.2763 13 7 4.1759 -2.3703 2.5427 14 6 5.2917 -2.9746 2.0279 15 1 6.2624 -2.5210 2.1630 16 6 5.1750 -4.1703 1.3323 17 7 3.9920 -4.7233 1.1680 18 14 6.6970 -4.9942 0.6294 19 1 7.6418 -5.3105 1.7306 20 1 6.3058 -6.2481 -0.0633 21 1 7.3533 -4.0788 -0.3383 22 6 2.0324 -0.7103 -1.2305 23 6 1.6983 -2.0337 -1.4491 24 6 2.1577 -2.6862 -2.5772 25 6 2.9541 -2.0148 -3.4900 26 9 3.4036 -2.6531 -4.5927 27 6 3.2901 -0.6900 -3.2717 28 6 2.8249 -0.0359 -2.1437 29 9 3.1476 1.2588 -1.9321 30 1 -0.3633 0.5267 0.8825 31 1 -0.3634 0.5008 -0.8973 32 1 -0.3633 -1.0276 0.0150 33 1 2.8878 2.0172 2.1550 34 1 1.1258 1.7218 2.0556 35 1 2.1888 2.6270 4.3732 36 1 0.9469 1.3312 4.4300 37 1 4.0026 1.0545 4.5637 38 1 2.7665 0.2603 5.5935 39 1 4.8530 -0.3895 2.6725 40 1 4.8298 -1.2823 4.2122 41 1 3.3041 -2.7779 2.4216 42 1 3.9104 -5.5586 0.6816 43 1 1.0777 -2.5582 -0.7375 44 1 1.8964 -3.7203 -2.7468 45 1 3.9114 -0.1659 -3.9828 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699766981.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:58 Heat of formation + Delta-G solvation = -92.319967 kcal Electronic energy + Delta-G solvation = -31063.678489 eV Core-core repulsion = 26717.103805 eV Total energy + Delta-G solvation = -4346.574684 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -50.10924 -50.06752 -41.42277 -39.91811 -38.24182 -36.27003 -35.00060 -33.20679 -32.41727 -31.77301 -30.35332 -29.95778 -26.64633 -25.95331 -24.59900 -24.20781 -23.66722 -22.44920 -21.58113 -19.79279 -19.31534 -19.16174 -18.43368 -17.59487 -17.50348 -17.04128 -16.90630 -16.63995 -16.48311 -16.38171 -15.82295 -15.52774 -15.32127 -15.22438 -14.97692 -14.77071 -14.60652 -14.00472 -13.94841 -13.80540 -13.51298 -13.40376 -13.20748 -13.07523 -12.87105 -12.81479 -12.79655 -12.60955 -12.31281 -12.26051 -12.14240 -11.98833 -11.89544 -11.58423 -11.46607 -10.88018 -10.40045 -10.04608 -9.64936 -9.40737 -8.76116 -7.77907 -5.04579 -0.13245 0.03009 1.39544 1.42446 1.48008 1.85419 2.12509 2.42617 2.57975 2.80604 3.31590 3.42477 3.48292 3.51306 3.64080 3.74400 3.83187 3.95538 4.05049 4.10496 4.21235 4.27268 4.33360 4.44890 4.48942 4.66054 4.71152 4.76289 4.82445 4.84677 4.87687 4.90191 4.92268 4.96174 5.03800 5.08500 5.19729 5.21348 5.22943 5.30417 5.44302 5.50081 5.65456 5.73689 6.38784 6.76994 7.40403 7.57151 8.35667 8.68273 9.41876 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007797 B = 0.006563 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3590.367425 B = 4265.443720 C = 6889.752741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.055 4.055 3 H 0.112 0.888 4 C 0.509 3.491 5 O -0.516 6.516 6 N -0.619 5.619 7 C 0.089 3.911 8 C -0.116 4.116 9 C -0.116 4.116 10 C 0.133 3.867 11 H 0.050 0.950 12 C 0.142 3.858 13 N -0.733 5.733 14 C -0.248 4.248 15 H 0.056 0.944 16 C -0.062 4.062 17 N -0.938 5.938 18 Si 0.952 3.048 19 H -0.279 1.279 20 H -0.293 1.293 21 H -0.289 1.289 22 C -0.121 4.121 23 C -0.021 4.021 24 C -0.168 4.168 25 C 0.117 3.883 26 F -0.137 7.137 27 C -0.196 4.196 28 C 0.126 3.874 29 F -0.128 7.128 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.113 0.887 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.007 0.993 40 H 0.019 0.981 41 H 0.392 0.608 42 H 0.242 0.758 43 H 0.138 0.862 44 H 0.145 0.855 45 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.406 18.143 -1.351 20.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.076 4.076 3 H 0.130 0.870 4 C 0.296 3.704 5 O -0.389 6.389 6 N -0.355 5.355 7 C -0.033 4.033 8 C -0.154 4.154 9 C -0.155 4.155 10 C 0.029 3.971 11 H 0.068 0.932 12 C 0.014 3.986 13 N -0.384 5.384 14 C -0.381 4.381 15 H 0.074 0.926 16 C -0.256 4.256 17 N -0.588 5.588 18 Si 0.783 3.217 19 H -0.205 1.205 20 H -0.219 1.219 21 H -0.216 1.216 22 C -0.123 4.123 23 C -0.039 4.039 24 C -0.187 4.187 25 C 0.097 3.903 26 F -0.115 7.115 27 C -0.215 4.215 28 C 0.106 3.894 29 F -0.106 7.106 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.116 0.884 35 H 0.131 0.869 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.113 0.887 39 H 0.025 0.975 40 H 0.036 0.964 41 H 0.233 0.767 42 H 0.051 0.949 43 H 0.156 0.844 44 H 0.163 0.837 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -10.182 17.431 -1.513 20.243 hybrid contribution 1.290 -1.228 -0.765 1.939 sum -8.892 16.202 -2.277 18.622 Atomic orbital electron populations 1.21735 0.89088 1.03235 1.04503 1.20111 0.99774 0.99620 0.88123 0.86967 1.20610 0.78084 0.87593 0.84109 1.90790 1.50405 1.15333 1.82392 1.48565 1.62546 1.11055 1.13295 1.22636 1.02201 0.79866 0.98559 1.22764 0.99351 1.00708 0.92537 1.22623 1.01136 0.94022 0.97700 1.21779 0.92534 0.97033 0.85764 0.93220 1.21200 0.95495 0.87875 0.94048 1.43064 1.07716 1.23181 1.64421 1.19407 0.88317 1.02924 1.27433 0.92617 1.25327 0.98520 0.99173 1.02563 1.69907 1.22422 1.19536 1.46929 0.85545 0.80214 0.77713 0.78274 1.20520 1.21925 1.21562 1.19656 1.00777 0.95362 0.96498 1.20803 0.96584 0.92456 0.94044 1.21370 1.00442 1.01826 0.95071 1.17383 0.97313 0.90770 0.84817 1.91493 1.87506 1.81774 1.50759 1.21053 1.05910 0.94369 1.00210 1.17062 0.97847 0.79212 0.95236 1.91477 1.91056 1.33398 1.94708 0.89625 0.89322 0.92671 0.91283 0.88420 0.86874 0.89728 0.89945 0.88668 0.97545 0.96357 0.76702 0.94853 0.84377 0.83678 0.81515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.59 8.98 71.98 0.65 -1.95 16 2 C -0.05 -1.52 2.27 -12.28 -0.03 -1.55 16 3 H 0.11 2.67 6.25 -2.39 -0.01 2.65 16 4 C 0.51 18.51 6.58 87.66 0.58 19.09 16 5 O -0.52 -24.76 11.00 -3.01 -0.03 -24.79 16 6 N -0.62 -18.92 3.07 -788.05 -2.42 -21.34 16 7 C 0.09 1.66 6.19 86.86 0.54 2.20 16 8 C -0.12 -1.62 7.08 31.99 0.23 -1.39 16 9 C -0.12 -2.40 6.45 31.78 0.20 -2.20 16 10 C 0.13 4.40 3.05 45.34 0.14 4.54 16 11 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 12 C 0.14 6.20 5.62 86.38 0.49 6.69 16 13 N -0.73 -41.10 4.39 -343.43 -1.51 -42.61 16 14 C -0.25 -15.26 9.99 84.03 0.84 -14.42 16 15 H 0.06 3.36 7.83 -2.91 -0.02 3.33 16 16 C -0.06 -3.85 5.50 84.86 0.47 -3.38 16 17 N -0.94 -60.97 13.06 21.65 0.28 -60.69 16 18 Si 0.95 50.01 29.55 68.60 2.03 52.03 16 19 H -0.28 -14.04 7.11 99.48 0.71 -13.34 16 20 H -0.29 -15.31 7.11 99.48 0.71 -14.60 16 21 H -0.29 -14.94 7.11 99.48 0.71 -14.23 16 22 C -0.12 -3.95 4.71 -19.82 -0.09 -4.05 16 23 C -0.02 -0.73 7.98 22.26 0.18 -0.56 16 24 C -0.17 -5.80 10.02 22.32 0.22 -5.57 16 25 C 0.12 3.82 7.30 22.37 0.16 3.98 16 26 F -0.14 -4.40 17.27 44.97 0.78 -3.62 16 27 C -0.20 -5.88 10.01 22.36 0.22 -5.66 16 28 C 0.13 3.90 7.24 22.37 0.16 4.06 16 29 F -0.13 -3.62 16.19 44.97 0.73 -2.89 16 30 H 0.08 1.34 7.54 -2.39 -0.02 1.32 16 31 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.05 1.28 7.42 -2.38 -0.02 1.26 16 33 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 34 H 0.10 1.33 7.13 -2.39 -0.02 1.31 16 35 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.08 1.06 8.14 -2.39 -0.02 1.05 16 37 H 0.08 1.65 7.86 -2.39 -0.02 1.63 16 38 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 40 H 0.02 0.80 8.11 -2.38 -0.02 0.78 16 41 H 0.39 23.51 4.85 -92.71 -0.45 23.06 16 42 H 0.24 15.38 8.31 -92.71 -0.77 14.61 16 43 H 0.14 5.20 6.72 -2.91 -0.02 5.18 16 44 H 0.15 4.68 8.06 -2.91 -0.02 4.66 16 45 H 0.17 4.07 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -79.39 369.94 5.38 -74.01 By element: Atomic # 1 Polarization: 29.49 SS G_CDS: 0.57 Total: 30.06 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: 4.95 Total: -0.17 kcal Atomic # 7 Polarization: -120.99 SS G_CDS: -3.64 Total: -124.63 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -0.03 Total: -24.79 kcal Atomic # 9 Polarization: -8.02 SS G_CDS: 1.50 Total: -6.52 kcal Atomic # 14 Polarization: 50.01 SS G_CDS: 2.03 Total: 52.03 kcal Total: -79.39 5.38 -74.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699766981.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.306 kcal (2) G-P(sol) polarization free energy of solvation -79.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds