Wall clock time and date at job start Tue Mar 31 2020 20:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 110.30961 * 2 1 4 4 C 1.54395 * 110.43018 * 237.76438 * 2 1 3 5 5 N 1.48427 * 104.65420 * 264.95170 * 4 2 1 6 6 C 1.34781 * 127.98028 * 140.36956 * 5 4 2 7 7 O 1.21288 * 119.99821 * 180.08950 * 6 5 4 8 8 C 1.50698 * 120.00019 * 0.08868 * 6 5 4 9 9 C 1.50707 * 109.46997 * 179.97438 * 8 6 5 10 10 C 1.38226 * 119.98821 * 264.72869 * 9 8 6 11 11 C 1.38186 * 120.04544 * 179.72862 * 10 9 8 12 12 C 1.38493 * 120.03006 * 0.54574 * 11 10 9 13 13 F 1.35090 * 120.01580 * 179.74773 * 12 11 10 14 14 C 1.38402 * 119.97012 * 359.72549 * 12 11 10 15 15 C 1.38442 * 119.95220 * 0.02562 * 14 12 11 16 16 F 1.35099 * 120.01118 * 179.97438 * 15 14 12 17 17 C 1.48146 * 104.18376 * 320.44270 * 5 4 2 18 18 C 1.54289 * 110.34438 * 122.17845 * 2 1 3 19 19 H 1.09003 * 110.34028 * 237.84525 * 18 2 1 20 20 C 1.53005 * 110.43052 * 0.05819 * 18 2 1 21 21 N 1.46499 * 109.47024 * 182.04452 * 20 18 2 22 22 C 1.36932 * 119.99648 * 180.02562 * 21 20 18 23 23 H 1.07995 * 120.00350 * 359.97438 * 22 21 20 24 24 C 1.38821 * 119.99894 * 180.02562 * 22 21 20 25 25 N 1.31616 * 119.99991 * 180.02562 * 24 22 21 26 26 Si 1.86803 * 119.99741 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.46974 * 89.99769 * 26 24 22 28 28 H 1.48493 * 109.47171 * 210.00086 * 26 24 22 29 29 H 1.48501 * 109.47135 * 330.00162 * 26 24 22 30 30 H 1.08995 * 109.46710 * 297.82330 * 1 2 3 31 31 H 1.08998 * 109.46899 * 57.82424 * 1 2 3 32 32 H 1.09001 * 109.47281 * 177.82322 * 1 2 3 33 33 H 1.09004 * 110.40266 * 23.73925 * 4 2 1 34 34 H 1.09006 * 110.40687 * 146.04793 * 4 2 1 35 35 H 1.09000 * 109.47323 * 300.00107 * 8 6 5 36 36 H 1.09004 * 109.46806 * 60.00247 * 8 6 5 37 37 H 1.07999 * 119.97810 * 359.97438 * 10 9 8 38 38 H 1.08004 * 119.98787 * 180.24809 * 11 10 9 39 39 H 1.08004 * 120.02548 * 180.02562 * 14 12 11 40 40 H 1.09002 * 110.40776 * 280.72897 * 17 5 4 41 41 H 1.09002 * 110.40863 * 158.41306 * 17 5 4 42 42 H 1.09003 * 109.46614 * 302.04330 * 20 18 2 43 43 H 1.09001 * 109.46921 * 62.04346 * 20 18 2 44 44 H 0.96994 * 119.99737 * 359.97438 * 21 20 18 45 45 H 0.97005 * 120.00013 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0222 0.0000 4 6 2.0689 -0.7717 -1.2238 5 7 2.3184 -2.1458 -0.7212 6 6 2.0845 -3.3145 -1.3506 7 8 2.3441 -4.3630 -0.7989 8 6 1.5006 -3.3184 -2.7398 9 6 1.3397 -4.7402 -3.2131 10 6 2.3235 -5.3261 -3.9873 11 6 2.1799 -6.6315 -4.4172 12 6 1.0446 -7.3505 -4.0822 13 9 0.9021 -8.6250 -4.5070 14 6 0.0563 -6.7630 -3.3118 15 6 0.2036 -5.4568 -2.8773 16 9 -0.7605 -4.8819 -2.1256 17 6 2.8824 -1.9401 0.6332 18 6 2.0664 -0.7704 1.2244 19 1 2.7081 -0.1265 1.8259 20 6 0.9077 -1.3038 2.0694 21 7 1.4394 -1.9886 3.2504 22 6 0.5831 -2.5516 4.1586 23 1 -0.4840 -2.4905 4.0047 24 6 1.0869 -3.2001 5.2780 25 7 0.2639 -3.7416 6.1507 26 14 2.9327 -3.3052 5.5446 27 1 3.3874 -2.1287 6.3284 28 1 3.2554 -4.5498 6.2876 29 1 3.6228 -3.3206 4.2298 30 1 -0.3632 0.4796 0.9088 31 1 -0.3633 0.5472 -0.8698 32 1 -0.3634 -1.0269 -0.0390 33 1 1.3252 -0.7879 -2.0206 34 1 2.9958 -0.3213 -1.5792 35 1 0.5276 -2.8273 -2.7264 36 1 2.1680 -2.7841 -3.4160 37 1 3.2070 -4.7646 -4.2531 38 1 2.9510 -7.0897 -5.0187 39 1 -0.8292 -7.3230 -3.0497 40 1 3.9374 -1.6734 0.5692 41 1 2.7541 -2.8373 1.2387 42 1 0.2757 -0.4735 2.3846 43 1 0.3188 -2.0045 1.4775 44 1 2.3978 -2.0438 3.3884 45 1 0.6159 -4.1944 6.9331 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699959338.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:43 Heat of formation + Delta-G solvation = -79.693489 kcal Electronic energy + Delta-G solvation = -29565.891365 eV Core-core repulsion = 25219.864206 eV Total energy + Delta-G solvation = -4346.027159 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.24195 -49.13396 -40.33880 -39.19347 -37.84961 -34.73417 -33.10183 -32.68192 -31.34290 -31.07299 -29.59880 -27.87323 -26.57317 -25.21468 -23.50221 -23.19218 -22.17308 -21.63076 -19.35960 -19.16942 -18.42442 -17.54666 -17.52232 -17.14871 -16.39451 -16.24279 -16.09644 -15.74094 -15.46055 -14.98232 -14.78482 -14.68653 -14.48864 -14.10537 -14.03201 -13.59273 -13.53015 -13.12470 -12.89799 -12.61672 -12.57645 -12.38342 -12.14101 -12.07351 -11.97824 -11.84812 -11.62616 -11.58450 -11.20594 -10.91517 -10.67619 -10.46326 -10.30474 -9.97155 -9.86945 -9.53838 -9.31461 -8.86305 -8.83619 -8.66721 -7.17714 -5.71828 -3.07050 0.65084 0.76209 2.64722 2.83066 3.19472 3.41339 3.43900 3.49310 3.63744 4.12102 4.23040 4.28622 4.40392 4.47569 4.55024 4.63998 4.74579 4.82785 4.85883 5.06786 5.15531 5.23046 5.27666 5.38822 5.46164 5.50728 5.52743 5.58453 5.63600 5.66469 5.72937 5.75086 5.84371 5.90158 5.92274 6.00348 6.06110 6.25567 6.29690 6.39265 6.48977 6.68373 6.82260 7.57943 8.03915 8.19288 8.46939 9.25895 9.98330 10.17519 11.46801 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011115 B = 0.003295 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.469614 B = 8495.046972 C = 9769.599931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.097 4.097 3 H 0.085 0.915 4 C 0.103 3.897 5 N -0.619 5.619 6 C 0.534 3.466 7 O -0.525 6.525 8 C -0.096 4.096 9 C -0.110 4.110 10 C -0.050 4.050 11 C -0.164 4.164 12 C 0.129 3.871 13 F -0.133 7.133 14 C -0.191 4.191 15 C 0.150 3.850 16 F -0.124 7.124 17 C 0.106 3.894 18 C -0.111 4.111 19 H 0.086 0.914 20 C 0.166 3.834 21 N -0.756 5.756 22 C -0.242 4.242 23 H 0.089 0.911 24 C 0.004 3.996 25 N -0.935 5.935 26 Si 0.884 3.116 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.277 1.277 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.142 0.858 38 H 0.143 0.857 39 H 0.149 0.851 40 H 0.065 0.935 41 H 0.095 0.905 42 H 0.032 0.968 43 H 0.029 0.971 44 H 0.359 0.641 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.452 4.477 -27.116 27.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.117 4.117 3 H 0.103 0.897 4 C -0.020 4.020 5 N -0.354 5.354 6 C 0.322 3.678 7 O -0.401 6.401 8 C -0.136 4.136 9 C -0.112 4.112 10 C -0.068 4.068 11 C -0.183 4.183 12 C 0.109 3.891 13 F -0.111 7.111 14 C -0.210 4.210 15 C 0.130 3.870 16 F -0.102 7.102 17 C -0.016 4.016 18 C -0.130 4.130 19 H 0.104 0.896 20 C 0.039 3.961 21 N -0.402 5.402 22 C -0.372 4.372 23 H 0.107 0.893 24 C -0.191 4.191 25 N -0.583 5.583 26 Si 0.714 3.286 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.203 1.203 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.160 0.840 38 H 0.160 0.840 39 H 0.167 0.833 40 H 0.084 0.916 41 H 0.113 0.887 42 H 0.050 0.950 43 H 0.047 0.953 44 H 0.192 0.808 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.306 3.685 -26.746 27.340 hybrid contribution 1.065 -0.267 0.501 1.207 sum 5.371 3.418 -26.245 27.006 Atomic orbital electron populations 1.21930 0.94124 1.02638 1.01884 1.22065 0.96914 0.98926 0.93797 0.89669 1.22577 1.00396 0.81959 0.97098 1.48963 1.63455 1.05172 1.17804 1.19938 0.78462 0.82355 0.87067 1.90785 1.51738 1.30406 1.67156 1.20548 1.04053 0.94118 0.94848 1.19402 0.94377 0.96431 1.00965 1.20706 0.97379 0.93928 0.94777 1.21131 0.97799 0.95233 1.04112 1.17287 0.95147 0.79603 0.97052 1.91526 1.95882 1.35796 1.87919 1.21022 1.01983 0.95099 1.02918 1.17102 0.86667 0.90977 0.92255 1.91563 1.61247 1.84156 1.73248 1.22476 0.96041 1.00299 0.82784 1.22417 0.98507 0.96094 0.96013 0.89588 1.20779 0.93101 0.94837 0.87336 1.42755 1.04853 1.67870 1.24699 1.19031 0.91062 1.27702 0.99360 0.89323 1.24663 0.97028 1.00228 0.97193 1.69701 1.33065 1.41990 1.13538 0.86552 0.87115 0.77327 0.77608 1.21116 1.21720 1.20308 0.91419 0.93082 0.91918 0.90334 0.90977 0.87482 0.87368 0.84012 0.83962 0.83280 0.91646 0.88658 0.95002 0.95324 0.80820 0.93107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 7.93 37.16 0.29 -1.31 16 2 C -0.10 -1.00 3.65 -89.21 -0.33 -1.32 16 3 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 4 C 0.10 0.91 6.48 -2.25 -0.01 0.90 16 5 N -0.62 -8.12 3.33 -169.06 -0.56 -8.68 16 6 C 0.53 7.73 7.91 -10.98 -0.09 7.65 16 7 O -0.53 -10.25 16.30 5.55 0.09 -10.16 16 8 C -0.10 -0.94 4.60 -29.03 -0.13 -1.07 16 9 C -0.11 -1.21 4.38 -104.54 -0.46 -1.67 16 10 C -0.05 -0.44 9.67 -39.60 -0.38 -0.83 16 11 C -0.16 -1.46 10.02 -39.51 -0.40 -1.86 16 12 C 0.13 1.36 7.30 -39.43 -0.29 1.07 16 13 F -0.13 -1.44 17.27 2.25 0.04 -1.40 16 14 C -0.19 -2.16 10.01 -39.45 -0.39 -2.56 16 15 C 0.15 1.88 7.24 -39.43 -0.29 1.59 16 16 F -0.12 -1.76 16.57 2.25 0.04 -1.72 16 17 C 0.11 1.61 6.39 -2.41 -0.02 1.59 16 18 C -0.11 -1.58 3.13 -89.21 -0.28 -1.86 16 19 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 20 C 0.17 3.19 4.43 -4.04 -0.02 3.17 16 21 N -0.76 -18.35 4.93 -59.91 -0.30 -18.64 16 22 C -0.24 -7.07 10.47 -15.06 -0.16 -7.23 16 23 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 24 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 25 N -0.93 -30.26 13.97 55.49 0.78 -29.49 16 26 Si 0.88 22.85 27.74 -169.99 -4.71 18.13 16 27 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 28 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 29 H -0.28 -6.78 6.52 56.52 0.37 -6.41 16 30 H 0.07 0.79 6.75 -51.93 -0.35 0.44 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.81 6.86 -51.93 -0.36 0.45 16 33 H 0.08 0.54 7.05 -51.93 -0.37 0.17 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.11 0.93 7.61 -51.93 -0.40 0.54 16 36 H 0.11 0.66 8.05 -51.93 -0.42 0.24 16 37 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 38 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 39 H 0.15 1.49 8.06 -52.48 -0.42 1.06 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.10 1.88 7.08 -51.93 -0.37 1.51 16 42 H 0.03 0.61 6.68 -51.93 -0.35 0.27 16 43 H 0.03 0.60 6.93 -51.93 -0.36 0.24 16 44 H 0.36 8.48 5.25 -40.82 -0.21 8.27 16 45 H 0.26 7.97 8.31 -40.82 -0.34 7.63 16 LS Contribution 373.46 15.07 5.63 5.63 Total: -1.00 -36.62 373.46 -8.19 -44.80 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -6.15 Total: 5.20 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: -3.04 Total: -3.67 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: -0.08 Total: -56.81 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.16 kcal Atomic # 9 Polarization: -3.20 SS G_CDS: 0.08 Total: -3.12 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.71 Total: 18.13 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.62 -8.19 -44.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699959338.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.889 kcal (2) G-P(sol) polarization free energy of solvation -36.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds