Wall clock time and date at job start Tue Mar 31 2020 20:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 110.30961 * 2 1 4 4 C 1.54395 * 110.43018 * 237.76438 * 2 1 3 5 5 N 1.48427 * 104.65420 * 264.95170 * 4 2 1 6 6 C 1.34781 * 127.98028 * 140.36956 * 5 4 2 7 7 O 1.21288 * 119.99821 * 180.08950 * 6 5 4 8 8 C 1.50698 * 120.00019 * 0.08868 * 6 5 4 9 9 C 1.50707 * 109.46997 * 179.97438 * 8 6 5 10 10 C 1.38226 * 119.98821 * 264.72869 * 9 8 6 11 11 C 1.38186 * 120.04544 * 179.72862 * 10 9 8 12 12 C 1.38493 * 120.03006 * 0.54574 * 11 10 9 13 13 F 1.35090 * 120.01580 * 179.74773 * 12 11 10 14 14 C 1.38402 * 119.97012 * 359.72549 * 12 11 10 15 15 C 1.38442 * 119.95220 * 0.02562 * 14 12 11 16 16 F 1.35099 * 120.01118 * 179.97438 * 15 14 12 17 17 C 1.48146 * 104.18376 * 320.44270 * 5 4 2 18 18 C 1.54289 * 110.34438 * 122.17845 * 2 1 3 19 19 H 1.09003 * 110.34028 * 237.84525 * 18 2 1 20 20 C 1.53005 * 110.43052 * 0.05819 * 18 2 1 21 21 N 1.46499 * 109.47024 * 182.04452 * 20 18 2 22 22 C 1.36932 * 119.99648 * 180.02562 * 21 20 18 23 23 H 1.07995 * 120.00350 * 359.97438 * 22 21 20 24 24 C 1.38821 * 119.99894 * 180.02562 * 22 21 20 25 25 N 1.31616 * 119.99991 * 180.02562 * 24 22 21 26 26 Si 1.86803 * 119.99741 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.46974 * 89.99769 * 26 24 22 28 28 H 1.48493 * 109.47171 * 210.00086 * 26 24 22 29 29 H 1.48501 * 109.47135 * 330.00162 * 26 24 22 30 30 H 1.08995 * 109.46710 * 297.82330 * 1 2 3 31 31 H 1.08998 * 109.46899 * 57.82424 * 1 2 3 32 32 H 1.09001 * 109.47281 * 177.82322 * 1 2 3 33 33 H 1.09004 * 110.40266 * 23.73925 * 4 2 1 34 34 H 1.09006 * 110.40687 * 146.04793 * 4 2 1 35 35 H 1.09000 * 109.47323 * 300.00107 * 8 6 5 36 36 H 1.09004 * 109.46806 * 60.00247 * 8 6 5 37 37 H 1.07999 * 119.97810 * 359.97438 * 10 9 8 38 38 H 1.08004 * 119.98787 * 180.24809 * 11 10 9 39 39 H 1.08004 * 120.02548 * 180.02562 * 14 12 11 40 40 H 1.09002 * 110.40776 * 280.72897 * 17 5 4 41 41 H 1.09002 * 110.40863 * 158.41306 * 17 5 4 42 42 H 1.09003 * 109.46614 * 302.04330 * 20 18 2 43 43 H 1.09001 * 109.46921 * 62.04346 * 20 18 2 44 44 H 0.96994 * 119.99737 * 359.97438 * 21 20 18 45 45 H 0.97005 * 120.00013 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0222 0.0000 4 6 2.0689 -0.7717 -1.2238 5 7 2.3184 -2.1458 -0.7212 6 6 2.0845 -3.3145 -1.3506 7 8 2.3441 -4.3630 -0.7989 8 6 1.5006 -3.3184 -2.7398 9 6 1.3397 -4.7402 -3.2131 10 6 2.3235 -5.3261 -3.9873 11 6 2.1799 -6.6315 -4.4172 12 6 1.0446 -7.3505 -4.0822 13 9 0.9021 -8.6250 -4.5070 14 6 0.0563 -6.7630 -3.3118 15 6 0.2036 -5.4568 -2.8773 16 9 -0.7605 -4.8819 -2.1256 17 6 2.8824 -1.9401 0.6332 18 6 2.0664 -0.7704 1.2244 19 1 2.7081 -0.1265 1.8259 20 6 0.9077 -1.3038 2.0694 21 7 1.4394 -1.9886 3.2504 22 6 0.5831 -2.5516 4.1586 23 1 -0.4840 -2.4905 4.0047 24 6 1.0869 -3.2001 5.2780 25 7 0.2639 -3.7416 6.1507 26 14 2.9327 -3.3052 5.5446 27 1 3.3874 -2.1287 6.3284 28 1 3.2554 -4.5498 6.2876 29 1 3.6228 -3.3206 4.2298 30 1 -0.3632 0.4796 0.9088 31 1 -0.3633 0.5472 -0.8698 32 1 -0.3634 -1.0269 -0.0390 33 1 1.3252 -0.7879 -2.0206 34 1 2.9958 -0.3213 -1.5792 35 1 0.5276 -2.8273 -2.7264 36 1 2.1680 -2.7841 -3.4160 37 1 3.2070 -4.7646 -4.2531 38 1 2.9510 -7.0897 -5.0187 39 1 -0.8292 -7.3230 -3.0497 40 1 3.9374 -1.6734 0.5692 41 1 2.7541 -2.8373 1.2387 42 1 0.2757 -0.4735 2.3846 43 1 0.3188 -2.0045 1.4775 44 1 2.3978 -2.0438 3.3884 45 1 0.6159 -4.1944 6.9331 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699959338.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:42 Heat of formation + Delta-G solvation = -104.047291 kcal Electronic energy + Delta-G solvation = -29566.947425 eV Core-core repulsion = 25219.864206 eV Total energy + Delta-G solvation = -4347.083219 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -50.12481 -50.06463 -41.34881 -40.05115 -38.94712 -36.53779 -34.32073 -33.70828 -33.14192 -31.84689 -30.90506 -28.95092 -27.46492 -26.66915 -24.62233 -24.26847 -23.49967 -22.77411 -20.58732 -20.30811 -19.40773 -19.24779 -18.36827 -18.22595 -17.41553 -17.09647 -16.98131 -16.71732 -16.66786 -16.38569 -15.98388 -15.84252 -15.59224 -15.46489 -15.05583 -14.80608 -14.61792 -14.49783 -14.03475 -13.96649 -13.92252 -13.37446 -13.19716 -13.02272 -12.96834 -12.91220 -12.85775 -12.70811 -12.58212 -12.38041 -12.19424 -11.89554 -11.70298 -11.60042 -11.26336 -10.98578 -10.96362 -10.10855 -9.70124 -9.67445 -9.32528 -8.08032 -5.41067 -0.15359 -0.02213 1.31113 1.37000 1.43266 1.61482 1.92998 2.38083 2.43575 2.82760 3.22939 3.32652 3.41442 3.47967 3.53742 3.56729 3.74777 3.84485 3.88728 4.01906 4.07762 4.31555 4.36515 4.39097 4.45810 4.56026 4.64088 4.71809 4.76141 4.80571 4.82330 4.87535 4.90803 4.94667 4.97130 5.00631 5.12826 5.15706 5.15860 5.28131 5.40412 5.60792 5.70210 5.71875 6.16209 6.60934 7.03283 7.16035 7.79760 7.98488 9.14034 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011115 B = 0.003295 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.469614 B = 8495.046972 C = 9769.599931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.089 4.089 3 H 0.124 0.876 4 C 0.103 3.897 5 N -0.620 5.620 6 C 0.523 3.477 7 O -0.591 6.591 8 C -0.086 4.086 9 C -0.119 4.119 10 C -0.044 4.044 11 C -0.155 4.155 12 C 0.115 3.885 13 F -0.137 7.137 14 C -0.205 4.205 15 C 0.115 3.885 16 F -0.144 7.144 17 C 0.103 3.897 18 C -0.104 4.104 19 H 0.102 0.898 20 C 0.167 3.833 21 N -0.758 5.758 22 C -0.237 4.237 23 H 0.050 0.950 24 C -0.065 4.065 25 N -0.985 5.985 26 Si 0.957 3.043 27 H -0.266 1.266 28 H -0.297 1.297 29 H -0.257 1.257 30 H 0.051 0.949 31 H 0.084 0.916 32 H 0.030 0.970 33 H 0.106 0.894 34 H 0.110 0.890 35 H 0.117 0.883 36 H 0.158 0.842 37 H 0.180 0.820 38 H 0.173 0.827 39 H 0.149 0.851 40 H 0.093 0.907 41 H 0.040 0.960 42 H 0.033 0.967 43 H 0.003 0.997 44 H 0.365 0.635 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.751 7.288 -30.405 32.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.108 4.108 3 H 0.142 0.858 4 C -0.018 4.018 5 N -0.353 5.353 6 C 0.314 3.686 7 O -0.471 6.471 8 C -0.125 4.125 9 C -0.120 4.120 10 C -0.061 4.061 11 C -0.173 4.173 12 C 0.095 3.905 13 F -0.116 7.116 14 C -0.225 4.225 15 C 0.096 3.904 16 F -0.123 7.123 17 C -0.020 4.020 18 C -0.124 4.124 19 H 0.120 0.880 20 C 0.041 3.959 21 N -0.404 5.404 22 C -0.368 4.368 23 H 0.068 0.932 24 C -0.256 4.256 25 N -0.636 5.636 26 Si 0.784 3.216 27 H -0.192 1.192 28 H -0.223 1.223 29 H -0.182 1.182 30 H 0.070 0.930 31 H 0.103 0.897 32 H 0.049 0.951 33 H 0.124 0.876 34 H 0.128 0.872 35 H 0.135 0.865 36 H 0.176 0.824 37 H 0.198 0.802 38 H 0.190 0.810 39 H 0.167 0.833 40 H 0.111 0.889 41 H 0.058 0.942 42 H 0.051 0.949 43 H 0.021 0.979 44 H 0.198 0.802 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.599 6.574 -30.097 31.730 hybrid contribution -0.086 -1.145 1.497 1.886 sum 7.513 5.429 -28.600 30.065 Atomic orbital electron populations 1.21919 0.95030 1.00949 1.02699 1.22141 0.96067 1.00481 0.92128 0.85846 1.22934 1.03054 0.78998 0.96858 1.49112 1.62465 1.06797 1.16971 1.20823 0.77559 0.81724 0.88516 1.90753 1.54605 1.32784 1.69005 1.20633 1.05277 0.94071 0.92533 1.19719 0.94049 0.97242 1.01040 1.21171 0.97667 0.93962 0.93340 1.21535 0.97378 0.95190 1.03216 1.17489 0.95817 0.79676 0.97485 1.91511 1.95982 1.36112 1.87985 1.21135 1.02659 0.95134 1.03552 1.17500 0.87557 0.91855 0.93488 1.91501 1.62211 1.84500 1.74080 1.22389 0.97908 0.98083 0.83594 1.22368 0.96540 0.96384 0.97109 0.87967 1.20908 0.95247 0.93683 0.86059 1.42776 1.04544 1.67854 1.25224 1.19015 0.90208 1.27283 1.00280 0.93216 1.25556 1.02672 1.00370 0.97049 1.69895 1.35662 1.43585 1.14410 0.85375 0.80453 0.77442 0.78340 1.19190 1.22341 1.18211 0.93022 0.89692 0.95061 0.87586 0.87175 0.86486 0.82446 0.80223 0.80967 0.83338 0.88899 0.94163 0.94872 0.97947 0.80180 0.93286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 7.93 71.98 0.57 -2.31 16 2 C -0.09 -1.45 3.65 -9.88 -0.04 -1.48 16 3 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 4 C 0.10 1.29 6.48 86.48 0.56 1.85 16 5 N -0.62 -14.78 3.33 -807.17 -2.69 -17.47 16 6 C 0.52 14.54 7.91 87.66 0.69 15.23 16 7 O -0.59 -23.66 16.30 -3.06 -0.05 -23.71 16 8 C -0.09 -1.44 4.60 29.10 0.13 -1.30 16 9 C -0.12 -2.44 4.38 -19.81 -0.09 -2.53 16 10 C -0.04 -0.65 9.67 22.25 0.22 -0.43 16 11 C -0.15 -2.40 10.02 22.32 0.22 -2.18 16 12 C 0.11 2.39 7.30 22.37 0.16 2.56 16 13 F -0.14 -2.97 17.27 44.97 0.78 -2.19 16 14 C -0.21 -4.90 10.01 22.36 0.22 -4.68 16 15 C 0.12 2.99 7.24 22.37 0.16 3.16 16 16 F -0.14 -4.40 16.57 44.97 0.74 -3.66 16 17 C 0.10 2.98 6.39 86.53 0.55 3.53 16 18 C -0.10 -2.76 3.13 -9.88 -0.03 -2.79 16 19 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 20 C 0.17 6.53 4.43 86.38 0.38 6.91 16 21 N -0.76 -37.59 4.93 -343.44 -1.69 -39.28 16 22 C -0.24 -14.48 10.47 84.04 0.88 -13.60 16 23 H 0.05 3.35 8.06 -2.91 -0.02 3.32 16 24 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 25 N -0.98 -66.39 13.97 21.65 0.30 -66.09 16 26 Si 0.96 48.01 27.74 68.60 1.90 49.92 16 27 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 28 H -0.30 -15.11 7.11 99.48 0.71 -14.40 16 29 H -0.26 -11.92 6.52 99.48 0.65 -11.27 16 30 H 0.05 1.15 6.75 -2.39 -0.02 1.14 16 31 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.03 0.79 6.86 -2.39 -0.02 0.78 16 33 H 0.11 0.82 7.05 -2.38 -0.02 0.80 16 34 H 0.11 0.70 8.14 -2.38 -0.02 0.68 16 35 H 0.12 1.74 7.61 -2.39 -0.02 1.72 16 36 H 0.16 1.02 8.05 -2.39 -0.02 1.00 16 37 H 0.18 1.24 8.06 -2.91 -0.02 1.22 16 38 H 0.17 1.59 8.06 -2.91 -0.02 1.56 16 39 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 40 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.04 1.61 7.08 -2.39 -0.02 1.59 16 42 H 0.03 1.30 6.68 -2.39 -0.02 1.28 16 43 H 0.00 0.11 6.93 -2.39 -0.02 0.10 16 44 H 0.36 17.13 5.25 -92.71 -0.49 16.64 16 45 H 0.26 16.50 8.31 -92.70 -0.77 15.73 16 Total: -1.00 -88.87 373.46 4.85 -84.01 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 0.48 Total: 20.14 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: 5.08 Total: -1.67 kcal Atomic # 7 Polarization: -118.77 SS G_CDS: -4.07 Total: -122.84 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -0.05 Total: -23.71 kcal Atomic # 9 Polarization: -7.37 SS G_CDS: 1.52 Total: -5.85 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 1.90 Total: 49.92 kcal Total: -88.87 4.85 -84.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699959338.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.034 kcal (2) G-P(sol) polarization free energy of solvation -88.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds