Wall clock time and date at job start Tue Mar 31 2020 21:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.38878 * 2 1 4 4 C 1.54387 * 110.34427 * 237.76463 * 2 1 3 5 5 N 1.48151 * 104.61754 * 264.99878 * 4 2 1 6 6 C 1.34774 * 127.83576 * 140.41227 * 5 4 2 7 7 O 1.21290 * 119.99469 * 180.02562 * 6 5 4 8 8 C 1.50697 * 120.00328 * 0.02562 * 6 5 4 9 9 S 1.81002 * 109.47216 * 179.97438 * 8 6 5 10 10 C 1.76192 * 100.00014 * 180.02562 * 9 8 6 11 11 H 1.08003 * 120.00407 * 359.97438 * 10 9 8 12 12 C 1.38808 * 119.99975 * 180.02562 * 10 9 8 13 13 N 1.31632 * 119.99831 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00114 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46771 * 59.99594 * 14 12 10 16 16 H 1.48497 * 109.47126 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.46910 * 300.00047 * 14 12 10 18 18 C 1.48150 * 104.32188 * 320.41422 * 5 4 2 19 19 C 1.54286 * 110.34076 * 122.22863 * 2 1 3 20 20 H 1.09002 * 110.33925 * 237.84626 * 19 2 1 21 21 N 1.46905 * 110.34388 * 359.97438 * 19 2 1 22 22 C 1.46896 * 110.99862 * 196.32242 * 21 19 2 23 23 C 1.50706 * 109.46738 * 180.02562 * 22 21 19 24 24 C 1.34665 * 126.58881 * 95.02649 * 23 22 21 25 25 N 1.34134 * 108.02169 * 179.97438 * 24 23 22 26 26 C 1.30502 * 109.25131 * 0.02562 * 25 24 23 27 27 N 1.35042 * 108.69981 * 359.97438 * 26 25 24 28 28 C 1.46500 * 126.39384 * 180.02562 * 27 26 25 29 29 H 1.08999 * 109.47249 * 304.04217 * 1 2 3 30 30 H 1.09005 * 109.46953 * 64.04072 * 1 2 3 31 31 H 1.08996 * 109.47438 * 184.03955 * 1 2 3 32 32 H 1.09006 * 110.40641 * 23.77864 * 4 2 1 33 33 H 1.08990 * 110.40949 * 146.09734 * 4 2 1 34 34 H 1.08994 * 109.47199 * 299.99828 * 8 6 5 35 35 H 1.08994 * 109.47126 * 60.00292 * 8 6 5 36 36 H 0.96993 * 119.99728 * 180.02562 * 13 12 10 37 37 H 1.08996 * 110.40462 * 280.80118 * 18 5 4 38 38 H 1.08997 * 110.40726 * 158.37168 * 18 5 4 39 39 H 1.00899 * 111.00297 * 320.28449 * 21 19 2 40 40 H 1.08994 * 109.47101 * 60.00539 * 22 21 19 41 41 H 1.09000 * 109.47590 * 299.99914 * 22 21 19 42 42 H 1.08000 * 125.99421 * 0.23174 * 24 23 22 43 43 H 1.08006 * 125.64755 * 179.97438 * 26 25 24 44 44 H 1.08999 * 109.47215 * 89.98194 * 28 27 26 45 45 H 1.08996 * 109.47152 * 209.97988 * 28 27 26 46 46 H 1.09006 * 109.47478 * 329.98059 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0217 0.0000 4 6 2.0668 -0.7721 -1.2244 5 7 2.3139 -2.1439 -0.7225 6 6 2.0773 -3.3106 -1.3544 7 8 2.3355 -4.3608 -0.8053 8 6 1.4919 -3.3103 -2.7430 9 16 1.2950 -5.0162 -3.3152 10 6 0.6143 -4.7259 -4.9141 11 1 0.4448 -3.7147 -5.2535 12 6 0.2948 -5.7970 -5.7373 13 7 0.5008 -7.0294 -5.3234 14 14 -0.4277 -5.4893 -7.4322 15 1 0.5277 -4.6887 -8.2395 16 1 -0.6780 -6.7883 -8.1068 17 1 -1.7062 -4.7462 -7.2978 18 6 2.8801 -1.9422 0.6316 19 6 2.0663 -0.7715 1.2238 20 1 2.7080 -0.1281 1.8258 21 7 0.9523 -1.2817 2.0342 22 6 1.4113 -1.6709 3.3743 23 6 0.2438 -2.1886 4.1743 24 6 -0.1233 -3.4763 4.3173 25 7 -1.2086 -3.5135 5.1046 26 6 -1.5282 -2.2975 5.4545 27 7 -0.6470 -1.4404 4.8955 28 6 -0.6448 0.0179 5.0352 29 1 -0.3634 0.5753 0.8515 30 1 -0.3633 0.4499 -0.9240 31 1 -0.3634 -1.0250 0.0724 32 1 1.3223 -0.7871 -2.0205 33 1 2.9938 -0.3231 -1.5805 34 1 0.5199 -2.8175 -2.7274 35 1 2.1595 -2.7757 -3.4186 36 1 0.2779 -7.7778 -5.8988 37 1 3.9353 -1.6770 0.5667 38 1 2.7494 -2.8399 1.2358 39 1 0.2060 -0.6050 2.0899 40 1 1.8410 -0.8045 3.8770 41 1 2.1665 -2.4520 3.2871 42 1 0.3719 -4.3300 3.8786 43 1 -2.3597 -2.0224 6.0865 44 1 -0.0412 0.2994 5.8981 45 1 -0.2251 0.4684 4.1358 46 1 -1.6665 0.3711 5.1757 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700257344.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:01 Heat of formation + Delta-G solvation = 46.431881 kcal Electronic energy + Delta-G solvation = -26926.791809 eV Core-core repulsion = 23172.366994 eV Total energy + Delta-G solvation = -3754.424815 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.27706 -40.06458 -37.88761 -35.33289 -34.19104 -32.52285 -32.37886 -30.69351 -29.68318 -27.57214 -27.30832 -26.53304 -25.45076 -24.99978 -22.75615 -21.63647 -20.34489 -19.74697 -19.26692 -17.73562 -17.31345 -16.88970 -16.52594 -16.11566 -15.48711 -15.16251 -15.02459 -14.76954 -14.70185 -14.26509 -13.86386 -13.81897 -13.64811 -13.29616 -13.19111 -13.05268 -12.98653 -12.72906 -12.60539 -12.39642 -12.29012 -11.82212 -11.68111 -11.23070 -11.15195 -11.10206 -11.00663 -10.99079 -10.73210 -10.10864 -9.81516 -9.77782 -9.30772 -9.01674 -8.82793 -8.55005 -8.40682 -8.17269 -6.44306 -6.16851 -3.86957 1.75345 2.47909 2.97180 3.03020 3.17697 3.26298 3.28917 3.32205 3.67727 3.86230 4.18242 4.23779 4.25287 4.30644 4.48804 4.51015 4.60169 4.70553 4.73486 4.85514 4.97574 5.08812 5.11202 5.17624 5.17889 5.22754 5.39694 5.47478 5.48787 5.60702 5.62627 5.65183 5.65864 5.78303 5.90065 5.96545 6.09384 6.14332 6.20096 6.39008 6.57920 6.71736 6.95581 7.00173 7.63325 7.82634 7.91585 8.39365 8.67871 9.27969 10.90555 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014482 B = 0.002532 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.923734 B =11054.142129 C =11797.902415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.104 4.104 3 H 0.084 0.916 4 C 0.107 3.893 5 N -0.621 5.621 6 C 0.557 3.443 7 O -0.514 6.514 8 C -0.145 4.145 9 S -0.059 6.059 10 C -0.535 4.535 11 H 0.071 0.929 12 C 0.074 3.926 13 N -0.867 5.867 14 Si 0.918 3.082 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 C 0.115 3.885 19 C 0.075 3.925 20 H 0.057 0.943 21 N -0.671 5.671 22 C 0.136 3.864 23 C -0.027 4.027 24 C 0.002 3.998 25 N -0.493 5.493 26 C 0.180 3.820 27 N -0.463 5.463 28 C 0.073 3.927 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.269 0.731 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.342 0.658 40 H 0.034 0.966 41 H 0.098 0.902 42 H 0.172 0.828 43 H 0.203 0.797 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.041 22.666 20.064 30.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.124 4.124 3 H 0.102 0.898 4 C -0.017 4.017 5 N -0.358 5.358 6 C 0.345 3.655 7 O -0.388 6.388 8 C -0.296 4.296 9 S 0.168 5.832 10 C -0.683 4.683 11 H 0.089 0.911 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.744 3.256 15 H -0.200 1.200 16 H -0.208 1.208 17 H -0.200 1.200 18 C -0.009 4.009 19 C -0.035 4.035 20 H 0.075 0.925 21 N -0.306 5.306 22 C 0.007 3.993 23 C -0.141 4.141 24 C -0.147 4.147 25 N -0.210 5.210 26 C -0.102 4.102 27 N -0.147 5.147 28 C -0.070 4.070 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.108 0.892 39 H 0.164 0.836 40 H 0.052 0.948 41 H 0.116 0.884 42 H 0.189 0.811 43 H 0.220 0.780 44 H 0.094 0.906 45 H 0.097 0.903 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.017 19.589 20.767 28.566 hybrid contribution -0.313 3.233 -1.519 3.586 sum 0.704 22.823 19.248 29.864 Atomic orbital electron populations 1.21759 0.93901 1.03492 1.01044 1.22242 0.97193 0.98623 0.94347 0.89776 1.22383 1.00634 0.82310 0.96392 1.48815 1.64962 1.05211 1.16777 1.19901 0.77079 0.81537 0.86934 1.90711 1.51026 1.29993 1.67086 1.23484 1.02907 1.08255 0.94941 1.85418 1.82824 0.97345 1.17623 1.22818 1.48760 0.95432 1.01323 0.91068 1.24988 0.95341 0.94437 0.98810 1.70010 1.45156 0.98073 1.37023 0.86236 0.79414 0.77657 0.82256 1.19981 1.20819 1.19962 1.22243 0.95348 0.98702 0.84592 1.22511 0.92150 0.94974 0.93877 0.92519 1.60658 1.10497 1.46960 1.12498 1.20295 0.92530 0.99701 0.86807 1.21034 0.97783 0.92347 1.02930 1.22183 0.95957 0.95510 1.01067 1.70333 1.14505 1.21179 1.15026 1.24943 0.97662 0.84807 1.02798 1.45293 1.23575 1.07621 1.38255 1.21984 1.04307 0.77383 1.03283 0.93317 0.92218 0.90434 0.89818 0.91196 0.89446 0.89537 0.92147 0.91451 0.89241 0.83599 0.94806 0.88351 0.81126 0.78025 0.90600 0.90317 0.89256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 7.81 37.16 0.29 -0.89 16 2 C -0.10 -0.80 3.66 -89.22 -0.33 -1.13 16 3 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 4 C 0.11 1.10 6.46 -2.41 -0.02 1.09 16 5 N -0.62 -8.96 3.32 -169.31 -0.56 -9.52 16 6 C 0.56 11.07 7.93 -10.99 -0.09 10.98 16 7 O -0.51 -12.32 16.13 5.55 0.09 -12.24 16 8 C -0.15 -3.07 5.14 36.00 0.18 -2.88 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.54 -15.49 9.50 30.94 0.29 -15.20 16 11 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 12 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 13 N -0.87 -26.59 13.22 55.49 0.73 -25.86 16 14 Si 0.92 21.68 29.55 -169.99 -5.02 16.66 16 15 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 18 C 0.12 1.33 6.62 -2.41 -0.02 1.31 16 19 C 0.08 0.62 3.35 -66.31 -0.22 0.40 16 20 H 0.06 0.35 7.95 -51.93 -0.41 -0.06 16 21 N -0.67 -6.02 5.35 -106.51 -0.57 -6.59 16 22 C 0.14 1.13 5.54 -4.97 -0.03 1.10 16 23 C -0.03 -0.28 6.46 -81.60 -0.53 -0.80 16 24 C 0.00 0.02 11.79 -17.81 -0.21 -0.19 16 25 N -0.49 -6.60 11.25 -14.66 -0.16 -6.76 16 26 C 0.18 1.71 12.56 -90.37 -1.14 0.58 16 27 N -0.46 -3.74 3.15 -121.36 -0.38 -4.12 16 28 C 0.07 0.26 10.95 59.85 0.66 0.92 16 29 H 0.05 0.31 7.06 -51.93 -0.37 -0.06 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.88 7.53 -51.93 -0.39 0.49 16 32 H 0.08 0.90 7.02 -51.93 -0.36 0.54 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 1.73 7.95 -51.92 -0.41 1.32 16 35 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 36 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 1.23 6.97 -51.93 -0.36 0.86 16 39 H 0.34 2.73 5.95 -39.29 -0.23 2.50 16 40 H 0.03 0.22 8.02 -51.93 -0.42 -0.20 16 41 H 0.10 0.87 7.32 -51.93 -0.38 0.49 16 42 H 0.17 2.18 8.06 -52.49 -0.42 1.76 16 43 H 0.20 1.13 8.06 -52.48 -0.42 0.71 16 44 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 45 H 0.08 0.23 7.70 -51.93 -0.40 -0.17 16 46 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 LS Contribution 389.83 15.07 5.87 5.87 Total: -1.00 -38.19 389.83 -10.54 -48.74 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -7.09 Total: 0.37 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -1.24 Total: -2.69 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: -0.94 Total: -52.86 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.09 Total: -12.24 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -38.19 -10.54 -48.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700257344.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.167 kcal (2) G-P(sol) polarization free energy of solvation -38.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds