Wall clock time and date at job start Tue Mar 31 2020 21:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.38878 * 2 1 4 4 C 1.54387 * 110.34427 * 237.76463 * 2 1 3 5 5 N 1.48151 * 104.61754 * 264.99878 * 4 2 1 6 6 C 1.34774 * 127.83576 * 140.41227 * 5 4 2 7 7 O 1.21290 * 119.99469 * 180.02562 * 6 5 4 8 8 C 1.50697 * 120.00328 * 0.02562 * 6 5 4 9 9 S 1.81002 * 109.47216 * 179.97438 * 8 6 5 10 10 C 1.76192 * 100.00014 * 180.02562 * 9 8 6 11 11 H 1.08003 * 120.00407 * 359.97438 * 10 9 8 12 12 C 1.38808 * 119.99975 * 180.02562 * 10 9 8 13 13 N 1.31632 * 119.99831 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00114 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46771 * 59.99594 * 14 12 10 16 16 H 1.48497 * 109.47126 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.46910 * 300.00047 * 14 12 10 18 18 C 1.48150 * 104.32188 * 320.41422 * 5 4 2 19 19 C 1.54286 * 110.34076 * 122.22863 * 2 1 3 20 20 H 1.09002 * 110.33925 * 237.84626 * 19 2 1 21 21 N 1.46905 * 110.34388 * 359.97438 * 19 2 1 22 22 C 1.46896 * 110.99862 * 196.32242 * 21 19 2 23 23 C 1.50706 * 109.46738 * 180.02562 * 22 21 19 24 24 C 1.34665 * 126.58881 * 95.02649 * 23 22 21 25 25 N 1.34134 * 108.02169 * 179.97438 * 24 23 22 26 26 C 1.30502 * 109.25131 * 0.02562 * 25 24 23 27 27 N 1.35042 * 108.69981 * 359.97438 * 26 25 24 28 28 C 1.46500 * 126.39384 * 180.02562 * 27 26 25 29 29 H 1.08999 * 109.47249 * 304.04217 * 1 2 3 30 30 H 1.09005 * 109.46953 * 64.04072 * 1 2 3 31 31 H 1.08996 * 109.47438 * 184.03955 * 1 2 3 32 32 H 1.09006 * 110.40641 * 23.77864 * 4 2 1 33 33 H 1.08990 * 110.40949 * 146.09734 * 4 2 1 34 34 H 1.08994 * 109.47199 * 299.99828 * 8 6 5 35 35 H 1.08994 * 109.47126 * 60.00292 * 8 6 5 36 36 H 0.96993 * 119.99728 * 180.02562 * 13 12 10 37 37 H 1.08996 * 110.40462 * 280.80118 * 18 5 4 38 38 H 1.08997 * 110.40726 * 158.37168 * 18 5 4 39 39 H 1.00899 * 111.00297 * 320.28449 * 21 19 2 40 40 H 1.08994 * 109.47101 * 60.00539 * 22 21 19 41 41 H 1.09000 * 109.47590 * 299.99914 * 22 21 19 42 42 H 1.08000 * 125.99421 * 0.23174 * 24 23 22 43 43 H 1.08006 * 125.64755 * 179.97438 * 26 25 24 44 44 H 1.08999 * 109.47215 * 89.98194 * 28 27 26 45 45 H 1.08996 * 109.47152 * 209.97988 * 28 27 26 46 46 H 1.09006 * 109.47478 * 329.98059 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0217 0.0000 4 6 2.0668 -0.7721 -1.2244 5 7 2.3139 -2.1439 -0.7225 6 6 2.0773 -3.3106 -1.3544 7 8 2.3355 -4.3608 -0.8053 8 6 1.4919 -3.3103 -2.7430 9 16 1.2950 -5.0162 -3.3152 10 6 0.6143 -4.7259 -4.9141 11 1 0.4448 -3.7147 -5.2535 12 6 0.2948 -5.7970 -5.7373 13 7 0.5008 -7.0294 -5.3234 14 14 -0.4277 -5.4893 -7.4322 15 1 0.5277 -4.6887 -8.2395 16 1 -0.6780 -6.7883 -8.1068 17 1 -1.7062 -4.7462 -7.2978 18 6 2.8801 -1.9422 0.6316 19 6 2.0663 -0.7715 1.2238 20 1 2.7080 -0.1281 1.8258 21 7 0.9523 -1.2817 2.0342 22 6 1.4113 -1.6709 3.3743 23 6 0.2438 -2.1886 4.1743 24 6 -0.1233 -3.4763 4.3173 25 7 -1.2086 -3.5135 5.1046 26 6 -1.5282 -2.2975 5.4545 27 7 -0.6470 -1.4404 4.8955 28 6 -0.6448 0.0179 5.0352 29 1 -0.3634 0.5753 0.8515 30 1 -0.3633 0.4499 -0.9240 31 1 -0.3634 -1.0250 0.0724 32 1 1.3223 -0.7871 -2.0205 33 1 2.9938 -0.3231 -1.5805 34 1 0.5199 -2.8175 -2.7274 35 1 2.1595 -2.7757 -3.4186 36 1 0.2779 -7.7778 -5.8988 37 1 3.9353 -1.6770 0.5667 38 1 2.7494 -2.8399 1.2358 39 1 0.2060 -0.6050 2.0899 40 1 1.8410 -0.8045 3.8770 41 1 2.1665 -2.4520 3.2871 42 1 0.3719 -4.3300 3.8786 43 1 -2.3597 -2.0224 6.0865 44 1 -0.0412 0.2994 5.8981 45 1 -0.2251 0.4684 4.1358 46 1 -1.6665 0.3711 5.1757 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700257344.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:00 Heat of formation + Delta-G solvation = 19.749516 kcal Electronic energy + Delta-G solvation = -26927.948844 eV Core-core repulsion = 23172.366994 eV Total energy + Delta-G solvation = -3755.581849 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.01251 -41.12387 -39.16674 -36.22966 -34.83701 -34.59054 -33.44228 -31.71317 -30.87073 -28.66295 -27.77544 -27.64127 -27.35882 -25.78775 -23.68909 -22.40357 -21.11076 -20.58270 -20.47016 -19.57752 -18.15315 -17.87281 -17.67886 -16.88944 -16.78617 -16.57523 -16.32289 -15.95426 -15.64061 -15.53221 -15.27586 -14.59589 -14.53786 -14.35185 -14.11757 -13.98556 -13.84029 -13.74074 -13.40709 -13.26315 -13.17663 -13.14128 -13.04294 -12.86509 -12.69564 -12.60867 -11.92834 -11.83796 -11.78800 -11.71724 -11.13178 -10.93910 -10.88279 -10.50067 -10.28202 -9.72492 -9.45042 -9.22177 -8.68318 -8.34486 -6.13576 1.02778 1.24464 1.43755 1.45005 1.55159 1.64091 1.91817 2.14021 2.18349 2.27659 2.99175 3.21073 3.25004 3.48278 3.57561 3.76882 3.90278 3.93630 3.96007 4.07424 4.11386 4.25086 4.32532 4.41530 4.42511 4.43828 4.50374 4.60551 4.62733 4.68299 4.72852 4.75798 4.85278 4.89856 4.92666 5.03110 5.15779 5.33729 5.37133 5.40301 5.52926 5.76020 6.04683 6.19089 6.33279 6.42059 6.52486 7.05822 7.13392 7.19970 8.74778 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014482 B = 0.002532 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.923734 B =11054.142129 C =11797.902415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.092 4.092 3 H 0.127 0.873 4 C 0.094 3.906 5 N -0.614 5.614 6 C 0.551 3.449 7 O -0.572 6.572 8 C -0.116 4.116 9 S -0.154 6.154 10 C -0.546 4.546 11 H 0.082 0.918 12 C 0.012 3.988 13 N -0.912 5.912 14 Si 1.001 2.999 15 H -0.260 1.260 16 H -0.278 1.278 17 H -0.262 1.262 18 C 0.106 3.894 19 C 0.087 3.913 20 H 0.097 0.903 21 N -0.692 5.692 22 C 0.143 3.857 23 C -0.016 4.016 24 C -0.048 4.048 25 N -0.544 5.544 26 C 0.182 3.818 27 N -0.456 5.456 28 C 0.065 3.935 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.037 0.963 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.271 0.729 37 H 0.091 0.909 38 H 0.058 0.942 39 H 0.351 0.649 40 H 0.067 0.933 41 H 0.083 0.917 42 H 0.149 0.851 43 H 0.239 0.761 44 H 0.092 0.908 45 H 0.091 0.909 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.868 28.096 20.068 34.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.111 4.111 3 H 0.145 0.855 4 C -0.028 4.028 5 N -0.348 5.348 6 C 0.339 3.661 7 O -0.451 6.451 8 C -0.267 4.267 9 S 0.074 5.926 10 C -0.694 4.694 11 H 0.101 0.899 12 C -0.193 4.193 13 N -0.549 5.549 14 Si 0.822 3.178 15 H -0.184 1.184 16 H -0.203 1.203 17 H -0.186 1.186 18 C -0.017 4.017 19 C -0.023 4.023 20 H 0.114 0.886 21 N -0.328 5.328 22 C 0.014 3.986 23 C -0.131 4.131 24 C -0.196 4.196 25 N -0.263 5.263 26 C -0.101 4.101 27 N -0.139 5.139 28 C -0.076 4.076 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.056 0.944 32 H 0.096 0.904 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.123 0.877 36 H 0.080 0.920 37 H 0.109 0.891 38 H 0.076 0.924 39 H 0.174 0.826 40 H 0.085 0.915 41 H 0.102 0.898 42 H 0.166 0.834 43 H 0.255 0.745 44 H 0.111 0.889 45 H 0.110 0.890 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.851 25.129 20.798 32.630 hybrid contribution -0.238 1.678 -1.390 2.192 sum 0.613 26.807 19.407 33.101 Atomic orbital electron populations 1.21723 0.94428 1.01440 1.02414 1.22276 0.96610 1.00030 0.92210 0.85527 1.22829 1.02138 0.80030 0.97785 1.48749 1.62873 1.05338 1.17824 1.19634 0.77311 0.82542 0.86581 1.90684 1.53861 1.32432 1.68099 1.23253 1.04192 1.02985 0.96271 1.85634 1.83324 1.04594 1.19079 1.23149 1.48824 0.96176 1.01202 0.89944 1.26180 0.95465 0.93919 1.03710 1.70190 1.46429 0.99302 1.38946 0.84977 0.78931 0.77887 0.76023 1.18430 1.20344 1.18625 1.22582 0.97324 0.99174 0.82638 1.22482 0.91975 0.93575 0.94307 0.88557 1.60505 1.11392 1.47965 1.12981 1.20248 0.91365 1.00359 0.86660 1.21173 0.98034 0.91634 1.02289 1.22131 0.97438 0.96658 1.03362 1.70216 1.15483 1.23990 1.16592 1.25600 0.98196 0.84054 1.02231 1.45510 1.22175 1.09390 1.36779 1.22379 1.06380 0.74181 1.04680 0.90853 0.91819 0.94359 0.90402 0.88446 0.88208 0.87679 0.91970 0.89110 0.92363 0.82605 0.91509 0.89850 0.83366 0.74482 0.88909 0.89025 0.87041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 7.81 71.98 0.56 -1.31 16 2 C -0.09 -1.00 3.66 -9.89 -0.04 -1.03 16 3 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 4 C 0.09 1.65 6.46 86.53 0.56 2.21 16 5 N -0.61 -17.24 3.32 -807.96 -2.68 -19.92 16 6 C 0.55 22.63 7.93 87.66 0.70 23.32 16 7 O -0.57 -29.25 16.13 -3.06 -0.05 -29.30 16 8 C -0.12 -4.98 5.14 71.23 0.37 -4.62 16 9 S -0.15 -8.98 20.57 -56.49 -1.16 -10.15 16 10 C -0.55 -32.17 9.50 67.96 0.65 -31.52 16 11 H 0.08 4.49 7.80 -2.91 -0.02 4.47 16 12 C 0.01 0.69 5.49 84.86 0.47 1.16 16 13 N -0.91 -57.70 13.22 21.65 0.29 -57.41 16 14 Si 1.00 44.50 29.55 68.60 2.03 46.53 16 15 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 16 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 17 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 18 C 0.11 2.30 6.62 86.53 0.57 2.87 16 19 C 0.09 1.10 3.35 45.82 0.15 1.25 16 20 H 0.10 0.59 7.95 -2.39 -0.02 0.57 16 21 N -0.69 -10.98 5.35 -490.89 -2.62 -13.61 16 22 C 0.14 2.15 5.54 85.56 0.47 2.62 16 23 C -0.02 -0.31 6.46 40.95 0.26 -0.05 16 24 C -0.05 -1.35 11.79 83.52 0.98 -0.36 16 25 N -0.54 -15.40 11.25 -200.30 -2.25 -17.65 16 26 C 0.18 3.31 12.56 180.26 2.26 5.58 16 27 N -0.46 -6.49 3.15 -537.88 -1.70 -8.19 16 28 C 0.06 0.20 10.95 127.77 1.40 1.60 16 29 H 0.07 0.61 7.06 -2.39 -0.02 0.59 16 30 H 0.06 0.79 8.14 -2.38 -0.02 0.78 16 31 H 0.04 0.82 7.53 -2.39 -0.02 0.80 16 32 H 0.08 1.48 7.02 -2.38 -0.02 1.46 16 33 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.10 3.99 7.95 -2.40 -0.02 3.97 16 35 H 0.10 4.07 8.14 -2.40 -0.02 4.06 16 36 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 37 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.06 1.66 6.97 -2.39 -0.02 1.64 16 39 H 0.35 4.47 5.95 -89.69 -0.53 3.94 16 40 H 0.07 0.58 8.02 -2.39 -0.02 0.56 16 41 H 0.08 1.51 7.32 -2.39 -0.02 1.49 16 42 H 0.15 4.53 8.06 -2.91 -0.02 4.50 16 43 H 0.24 2.15 8.06 -2.91 -0.02 2.12 16 44 H 0.09 0.05 8.14 -2.39 -0.02 0.03 16 45 H 0.09 0.10 7.70 -2.39 -0.02 0.08 16 46 H 0.11 -0.09 8.14 -2.38 -0.02 -0.11 16 Total: -1.00 -92.10 389.83 1.67 -90.43 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: 0.45 Total: 17.54 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: 9.37 Total: 1.72 kcal Atomic # 7 Polarization: -107.81 SS G_CDS: -8.97 Total: -116.77 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: -0.05 Total: -29.30 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Atomic # 16 Polarization: -8.98 SS G_CDS: -1.16 Total: -10.15 kcal Total: -92.10 1.67 -90.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700257344.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.183 kcal (2) G-P(sol) polarization free energy of solvation -92.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds