Wall clock time and date at job start Tue Mar 31 2020 20:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 110.36880 * 2 1 4 4 C 1.54380 * 110.41291 * 237.52892 * 2 1 3 5 5 H 1.09009 * 110.32369 * 336.26385 * 4 2 1 6 6 N 1.46503 * 110.32393 * 98.46567 * 4 2 1 7 7 C 1.34780 * 119.99812 * 205.00125 * 6 4 2 8 8 O 1.21275 * 120.00302 * 0.02562 * 7 6 4 9 9 C 1.50700 * 119.99522 * 180.02562 * 7 6 4 10 10 S 1.81002 * 109.46912 * 180.02562 * 9 7 6 11 11 C 1.76205 * 100.00165 * 179.97438 * 10 9 7 12 12 H 1.08003 * 119.99412 * 359.97438 * 11 10 9 13 13 C 1.38798 * 120.00018 * 179.97438 * 11 10 9 14 14 N 1.31632 * 120.00146 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99870 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47177 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47251 * 120.00231 * 15 13 11 18 18 H 1.48501 * 109.47213 * 240.00394 * 15 13 11 19 19 C 1.54254 * 105.06279 * 217.36678 * 4 2 1 20 20 C 1.54379 * 105.06213 * 359.97438 * 19 4 2 21 21 N 1.48552 * 110.41663 * 122.35662 * 2 1 3 22 22 C 1.46904 * 110.99905 * 277.81883 * 21 2 1 23 23 C 1.50702 * 109.47336 * 169.99983 * 22 21 2 24 24 C 1.39870 * 125.90317 * 94.99589 * 23 22 21 25 25 C 1.35315 * 107.92072 * 179.97438 * 24 23 22 26 26 N 1.34939 * 107.74580 * 0.02562 * 25 24 23 27 27 C 1.46503 * 126.03492 * 179.97438 * 26 25 24 28 28 N 1.30839 * 125.89375 * 275.00129 * 23 22 21 29 29 H 1.09003 * 109.46924 * 299.09540 * 1 2 3 30 30 H 1.08994 * 109.47662 * 59.09811 * 1 2 3 31 31 H 1.09007 * 109.46986 * 179.10115 * 1 2 3 32 32 H 0.97000 * 119.99733 * 25.00900 * 6 4 2 33 33 H 1.09001 * 109.47472 * 299.99990 * 9 7 6 34 34 H 1.09002 * 109.47429 * 60.00199 * 9 7 6 35 35 H 0.96996 * 120.00169 * 179.97438 * 14 13 11 36 36 H 1.09001 * 110.32320 * 118.89839 * 19 4 2 37 37 H 1.09005 * 110.32529 * 240.99658 * 19 4 2 38 38 H 1.09000 * 110.41344 * 265.07588 * 20 19 4 39 39 H 1.08993 * 110.41279 * 142.63268 * 20 19 4 40 40 H 1.08997 * 109.47296 * 49.99916 * 22 21 2 41 41 H 1.09002 * 109.47218 * 289.99804 * 22 21 2 42 42 H 1.07999 * 126.03520 * 0.27153 * 24 23 22 43 43 H 1.07999 * 126.12174 * 179.97438 * 25 24 23 44 44 H 1.09002 * 109.47095 * 89.99917 * 27 26 25 45 45 H 1.09005 * 109.47183 * 209.99835 * 27 26 25 46 46 H 1.08999 * 109.47391 * 329.99548 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0684 -0.7768 -1.2207 5 1 1.3235 -1.4896 -1.5745 6 7 2.4354 0.1515 -2.2930 7 6 2.4422 -0.2675 -3.5740 8 8 2.1441 -1.4128 -3.8390 9 6 2.8203 0.6872 -4.6770 10 16 2.7338 -0.1670 -6.2704 11 6 3.2095 1.1443 -7.3469 12 1 3.4449 2.1173 -6.9414 13 6 3.2818 0.9268 -8.7158 14 7 2.9945 -0.2589 -9.2099 15 14 3.7869 2.3168 -9.8569 16 1 4.0545 3.5401 -9.0587 17 1 5.0150 1.9290 -10.5961 18 1 2.6920 2.5866 -10.8232 19 6 3.3177 -1.5195 -0.7039 20 6 3.4295 -1.1285 0.7854 21 7 2.0482 -0.7451 1.1760 22 6 2.0569 0.1038 2.3750 23 6 2.3505 -0.7420 3.5872 24 6 3.6089 -0.9377 4.1656 25 6 3.4544 -1.7571 5.2313 26 7 2.1449 -2.0693 5.3237 27 6 1.5345 -2.9347 6.3360 28 7 1.4721 -1.4201 4.2804 29 1 -0.3633 0.4997 0.8980 30 1 -0.3634 0.5277 -0.8817 31 1 -0.3633 -1.0276 -0.0161 32 1 2.6736 1.0676 -2.0810 33 1 2.1304 1.5310 -4.6796 34 1 3.8355 1.0485 -4.5127 35 1 3.0446 -0.4108 -10.1666 36 1 3.1861 -2.5969 -0.8041 37 1 4.2039 -1.1948 -1.2494 38 1 4.1078 -0.2840 0.9068 39 1 3.7694 -1.9784 1.3770 40 1 1.0829 0.5791 2.4908 41 1 2.8252 0.8701 2.2719 42 1 4.5387 -0.5067 3.8249 43 1 4.2389 -2.1004 5.8894 44 1 1.2314 -2.3333 7.1931 45 1 0.6607 -3.4295 5.9121 46 1 2.2573 -3.6851 6.6562 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707242803.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:41 Heat of formation + Delta-G solvation = 51.888873 kcal Electronic energy + Delta-G solvation = -26083.097716 eV Core-core repulsion = 22328.909534 eV Total energy + Delta-G solvation = -3754.188182 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.48012 -40.01346 -38.38023 -34.82410 -33.49172 -32.41652 -31.60657 -31.29106 -30.34319 -29.03773 -27.37400 -25.56817 -25.13891 -24.90911 -21.77757 -21.31857 -20.59393 -20.25231 -19.64253 -17.80690 -17.34132 -16.59729 -16.28030 -15.95540 -15.52451 -15.16932 -14.79851 -14.70848 -14.68940 -14.26780 -14.10119 -13.87243 -13.68860 -13.34151 -13.10463 -12.93149 -12.85220 -12.56352 -12.51782 -12.24342 -12.01600 -11.73619 -11.60163 -11.39441 -11.23990 -11.06123 -11.00694 -10.83215 -10.74755 -10.70365 -9.79186 -9.59992 -9.36768 -9.06593 -8.91284 -8.85129 -8.72626 -8.21238 -6.48276 -6.20601 -3.90860 1.58050 2.18534 2.42042 3.03975 3.11699 3.22365 3.28835 3.33240 3.64834 3.96770 4.10111 4.21450 4.32398 4.43766 4.51407 4.72098 4.75962 4.82377 4.96652 4.98311 5.03744 5.11195 5.14657 5.16187 5.27671 5.32523 5.32838 5.47165 5.59463 5.61948 5.66680 5.71449 5.74545 5.86279 5.90882 6.05973 6.09468 6.14705 6.15758 6.31237 6.48201 6.67413 6.72472 6.80882 7.45821 7.61012 7.73456 8.36590 8.64942 9.24877 10.86879 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.036784 B = 0.001757 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.018254 B =15935.816738 C =15971.374250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.057 3.943 3 H 0.059 0.941 4 C 0.149 3.851 5 H 0.102 0.898 6 N -0.733 5.733 7 C 0.533 3.467 8 O -0.515 6.515 9 C -0.153 4.153 10 S -0.060 6.060 11 C -0.535 4.535 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 C -0.136 4.136 20 C 0.037 3.963 21 N -0.496 5.496 22 C 0.125 3.875 23 C 0.085 3.915 24 C -0.267 4.267 25 C 0.051 3.949 26 N -0.379 5.379 27 C 0.102 3.898 28 N -0.276 5.276 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.396 0.604 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.268 0.732 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.046 0.954 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.059 0.941 42 H 0.145 0.855 43 H 0.172 0.828 44 H 0.073 0.927 45 H 0.089 0.911 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.355 0.168 32.496 32.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.052 4.052 3 H 0.077 0.923 4 C 0.043 3.957 5 H 0.120 0.880 6 N -0.387 5.387 7 C 0.320 3.680 8 O -0.388 6.388 9 C -0.304 4.304 10 S 0.167 5.833 11 C -0.683 4.683 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.206 1.206 19 C -0.176 4.176 20 C -0.091 4.091 21 N -0.221 5.221 22 C -0.005 4.005 23 C -0.082 4.082 24 C -0.297 4.297 25 C -0.095 4.095 26 N -0.161 5.161 27 C -0.039 4.039 28 N -0.099 5.099 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.230 0.770 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.064 0.936 39 H 0.100 0.900 40 H 0.108 0.892 41 H 0.077 0.923 42 H 0.162 0.838 43 H 0.189 0.811 44 H 0.091 0.909 45 H 0.108 0.892 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.796 -2.755 32.278 32.445 hybrid contribution 2.308 3.480 -0.348 4.190 sum 0.512 0.725 31.930 31.942 Atomic orbital electron populations 1.21720 0.92932 1.03100 1.01645 1.22847 0.96848 0.95835 0.89697 0.92329 1.21609 0.96750 0.91524 0.85860 0.88006 1.46118 1.72022 1.14541 1.06054 1.20299 0.76329 0.88730 0.82692 1.90705 1.46163 1.19241 1.82722 1.23536 1.04212 1.02120 1.00546 1.85412 1.89683 1.16814 0.91440 1.22915 1.53316 0.98344 0.93754 0.90894 1.24992 0.94874 0.96448 0.97285 1.70028 1.45638 1.21214 1.13393 0.86120 0.78289 0.81057 0.80038 1.19636 1.20579 1.20575 1.22781 0.98619 1.01744 0.94422 1.23150 0.89338 1.00533 0.96094 1.65310 1.18673 1.36538 1.01618 1.20507 1.02337 0.91797 0.85868 1.22000 0.91549 0.98016 0.96623 1.21395 0.98791 1.08749 1.00718 1.22499 0.87284 0.99611 1.00111 1.48550 1.05532 1.38394 1.23637 1.21844 1.00086 0.92923 0.89089 1.77376 1.20545 1.12315 0.99669 0.92522 0.91801 0.91414 0.76999 0.89248 0.89290 0.92245 0.90316 0.90479 0.93564 0.90005 0.89202 0.92344 0.83762 0.81083 0.90859 0.89219 0.89547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.34 37.15 0.35 -0.98 16 2 C 0.06 0.56 2.58 -66.08 -0.17 0.39 16 3 H 0.06 0.50 7.61 -51.93 -0.40 0.11 16 4 C 0.15 1.84 2.96 -66.55 -0.20 1.64 16 5 H 0.10 1.52 7.26 -51.92 -0.38 1.14 16 6 N -0.73 -9.71 5.02 -52.46 -0.26 -9.97 16 7 C 0.53 9.86 7.85 -10.98 -0.09 9.78 16 8 O -0.51 -11.67 15.51 5.56 0.09 -11.58 16 9 C -0.15 -3.08 6.16 36.01 0.22 -2.85 16 10 S -0.06 -1.63 20.57 -107.50 -2.21 -3.85 16 11 C -0.54 -15.26 9.50 30.94 0.29 -14.97 16 12 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 13 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 14 N -0.87 -26.23 13.22 55.49 0.73 -25.50 16 15 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 16 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 C -0.14 -1.59 6.79 -25.35 -0.17 -1.76 16 20 C 0.04 0.36 6.11 -2.17 -0.01 0.34 16 21 N -0.50 -5.01 5.01 -223.55 -1.12 -6.13 16 22 C 0.12 1.12 5.34 -4.97 -0.03 1.09 16 23 C 0.09 0.87 6.39 -82.40 -0.53 0.34 16 24 C -0.27 -2.25 10.73 -40.01 -0.43 -2.68 16 25 C 0.05 0.36 11.49 -17.23 -0.20 0.17 16 26 N -0.38 -3.23 4.01 -68.16 -0.27 -3.50 16 27 C 0.10 0.44 11.47 59.85 0.69 1.13 16 28 N -0.28 -3.18 12.58 33.67 0.42 -2.75 16 29 H 0.06 0.49 7.31 -51.93 -0.38 0.11 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.73 8.12 -51.92 -0.42 0.31 16 32 H 0.40 4.08 8.38 -40.82 -0.34 3.74 16 33 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 34 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 35 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.08 0.94 7.95 -51.93 -0.41 0.52 16 38 H 0.05 0.39 7.75 -51.93 -0.40 -0.01 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.09 0.79 7.18 -51.93 -0.37 0.42 16 41 H 0.06 0.44 7.77 -51.93 -0.40 0.03 16 42 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 43 H 0.17 0.59 8.06 -52.49 -0.42 0.17 16 44 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 45 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.09 0.16 8.14 -51.93 -0.42 -0.27 16 LS Contribution 395.69 15.07 5.96 5.96 Total: -1.00 -36.79 395.69 -9.33 -46.12 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -7.28 Total: 1.16 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: -0.37 Total: -6.38 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: -0.50 Total: -47.85 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.09 Total: -11.58 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.79 -9.33 -46.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707242803.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.008 kcal (2) G-P(sol) polarization free energy of solvation -36.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds