Wall clock time and date at job start Tue Mar 31 2020 20:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 110.36880 * 2 1 4 4 C 1.54380 * 110.41291 * 237.52892 * 2 1 3 5 5 H 1.09009 * 110.32369 * 336.26385 * 4 2 1 6 6 N 1.46503 * 110.32393 * 98.46567 * 4 2 1 7 7 C 1.34780 * 119.99812 * 205.00125 * 6 4 2 8 8 O 1.21275 * 120.00302 * 0.02562 * 7 6 4 9 9 C 1.50700 * 119.99522 * 180.02562 * 7 6 4 10 10 S 1.81002 * 109.46912 * 180.02562 * 9 7 6 11 11 C 1.76205 * 100.00165 * 179.97438 * 10 9 7 12 12 H 1.08003 * 119.99412 * 359.97438 * 11 10 9 13 13 C 1.38798 * 120.00018 * 179.97438 * 11 10 9 14 14 N 1.31632 * 120.00146 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99870 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47177 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47251 * 120.00231 * 15 13 11 18 18 H 1.48501 * 109.47213 * 240.00394 * 15 13 11 19 19 C 1.54254 * 105.06279 * 217.36678 * 4 2 1 20 20 C 1.54379 * 105.06213 * 359.97438 * 19 4 2 21 21 N 1.48552 * 110.41663 * 122.35662 * 2 1 3 22 22 C 1.46904 * 110.99905 * 277.81883 * 21 2 1 23 23 C 1.50702 * 109.47336 * 169.99983 * 22 21 2 24 24 C 1.39870 * 125.90317 * 94.99589 * 23 22 21 25 25 C 1.35315 * 107.92072 * 179.97438 * 24 23 22 26 26 N 1.34939 * 107.74580 * 0.02562 * 25 24 23 27 27 C 1.46503 * 126.03492 * 179.97438 * 26 25 24 28 28 N 1.30839 * 125.89375 * 275.00129 * 23 22 21 29 29 H 1.09003 * 109.46924 * 299.09540 * 1 2 3 30 30 H 1.08994 * 109.47662 * 59.09811 * 1 2 3 31 31 H 1.09007 * 109.46986 * 179.10115 * 1 2 3 32 32 H 0.97000 * 119.99733 * 25.00900 * 6 4 2 33 33 H 1.09001 * 109.47472 * 299.99990 * 9 7 6 34 34 H 1.09002 * 109.47429 * 60.00199 * 9 7 6 35 35 H 0.96996 * 120.00169 * 179.97438 * 14 13 11 36 36 H 1.09001 * 110.32320 * 118.89839 * 19 4 2 37 37 H 1.09005 * 110.32529 * 240.99658 * 19 4 2 38 38 H 1.09000 * 110.41344 * 265.07588 * 20 19 4 39 39 H 1.08993 * 110.41279 * 142.63268 * 20 19 4 40 40 H 1.08997 * 109.47296 * 49.99916 * 22 21 2 41 41 H 1.09002 * 109.47218 * 289.99804 * 22 21 2 42 42 H 1.07999 * 126.03520 * 0.27153 * 24 23 22 43 43 H 1.07999 * 126.12174 * 179.97438 * 25 24 23 44 44 H 1.09002 * 109.47095 * 89.99917 * 27 26 25 45 45 H 1.09005 * 109.47183 * 209.99835 * 27 26 25 46 46 H 1.08999 * 109.47391 * 329.99548 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0684 -0.7768 -1.2207 5 1 1.3235 -1.4896 -1.5745 6 7 2.4354 0.1515 -2.2930 7 6 2.4422 -0.2675 -3.5740 8 8 2.1441 -1.4128 -3.8390 9 6 2.8203 0.6872 -4.6770 10 16 2.7338 -0.1670 -6.2704 11 6 3.2095 1.1443 -7.3469 12 1 3.4449 2.1173 -6.9414 13 6 3.2818 0.9268 -8.7158 14 7 2.9945 -0.2589 -9.2099 15 14 3.7869 2.3168 -9.8569 16 1 4.0545 3.5401 -9.0587 17 1 5.0150 1.9290 -10.5961 18 1 2.6920 2.5866 -10.8232 19 6 3.3177 -1.5195 -0.7039 20 6 3.4295 -1.1285 0.7854 21 7 2.0482 -0.7451 1.1760 22 6 2.0569 0.1038 2.3750 23 6 2.3505 -0.7420 3.5872 24 6 3.6089 -0.9377 4.1656 25 6 3.4544 -1.7571 5.2313 26 7 2.1449 -2.0693 5.3237 27 6 1.5345 -2.9347 6.3360 28 7 1.4721 -1.4201 4.2804 29 1 -0.3633 0.4997 0.8980 30 1 -0.3634 0.5277 -0.8817 31 1 -0.3633 -1.0276 -0.0161 32 1 2.6736 1.0676 -2.0810 33 1 2.1304 1.5310 -4.6796 34 1 3.8355 1.0485 -4.5127 35 1 3.0446 -0.4108 -10.1666 36 1 3.1861 -2.5969 -0.8041 37 1 4.2039 -1.1948 -1.2494 38 1 4.1078 -0.2840 0.9068 39 1 3.7694 -1.9784 1.3770 40 1 1.0829 0.5791 2.4908 41 1 2.8252 0.8701 2.2719 42 1 4.5387 -0.5067 3.8249 43 1 4.2389 -2.1004 5.8894 44 1 1.2314 -2.3333 7.1931 45 1 0.6607 -3.4295 5.9121 46 1 2.2573 -3.6851 6.6562 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707242803.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:40 Heat of formation + Delta-G solvation = 24.699375 kcal Electronic energy + Delta-G solvation = -26084.276741 eV Core-core repulsion = 22328.909534 eV Total energy + Delta-G solvation = -3755.367207 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.07371 -41.13301 -39.59796 -35.82832 -34.57468 -34.31196 -32.46600 -32.24450 -30.99714 -30.36321 -28.06837 -27.64698 -26.15500 -25.55091 -22.71336 -21.95274 -21.54901 -21.37342 -20.43118 -19.77619 -17.99968 -17.81715 -17.47801 -16.87085 -16.77153 -16.44575 -16.09109 -15.98955 -15.81379 -15.34540 -14.92223 -14.69147 -14.68172 -14.44477 -14.33985 -14.02795 -13.67028 -13.48806 -13.29721 -13.14905 -13.13835 -12.92067 -12.87947 -12.69760 -12.58440 -12.44430 -12.31193 -12.09075 -11.72090 -11.64903 -11.42851 -11.14813 -10.93425 -10.25143 -10.22572 -10.09224 -9.55014 -9.38741 -8.65135 -8.33632 -6.11447 1.00387 1.27972 1.42318 1.47911 1.58758 1.62781 1.72061 1.81400 2.24896 2.29624 3.00688 3.10440 3.34832 3.43956 3.53809 3.78462 3.95042 3.99370 4.09036 4.16253 4.21487 4.30100 4.32917 4.34008 4.45417 4.46741 4.53165 4.56855 4.70642 4.71581 4.80506 4.82622 4.88963 4.93471 5.02431 5.04691 5.11424 5.17981 5.33523 5.43135 5.43728 5.71543 5.88247 5.99888 6.21300 6.22383 6.52059 6.84722 7.07892 7.27163 8.75845 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.036784 B = 0.001757 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.018254 B =15935.816738 C =15971.374250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.068 3.932 3 H 0.084 0.916 4 C 0.147 3.853 5 H 0.072 0.928 6 N -0.704 5.704 7 C 0.537 3.463 8 O -0.564 6.564 9 C -0.129 4.129 10 S -0.153 6.153 11 C -0.545 4.545 12 H 0.084 0.916 13 C 0.013 3.987 14 N -0.912 5.912 15 Si 0.999 3.001 16 H -0.256 1.256 17 H -0.274 1.274 18 H -0.275 1.275 19 C -0.134 4.134 20 C 0.049 3.951 21 N -0.510 5.510 22 C 0.127 3.873 23 C 0.071 3.929 24 C -0.284 4.284 25 C 0.056 3.944 26 N -0.385 5.385 27 C 0.094 3.906 28 N -0.326 5.326 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.416 0.584 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.271 0.729 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.079 0.921 42 H 0.159 0.841 43 H 0.209 0.791 44 H 0.086 0.914 45 H 0.081 0.919 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.790 2.590 34.603 34.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.041 4.041 3 H 0.102 0.898 4 C 0.041 3.959 5 H 0.090 0.910 6 N -0.359 5.359 7 C 0.323 3.677 8 O -0.442 6.442 9 C -0.280 4.280 10 S 0.074 5.926 11 C -0.693 4.693 12 H 0.102 0.898 13 C -0.192 4.192 14 N -0.549 5.549 15 Si 0.821 3.179 16 H -0.179 1.179 17 H -0.200 1.200 18 H -0.200 1.200 19 C -0.174 4.174 20 C -0.079 4.079 21 N -0.236 5.236 22 C -0.002 4.002 23 C -0.095 4.095 24 C -0.314 4.314 25 C -0.090 4.090 26 N -0.168 5.168 27 C -0.046 4.046 28 N -0.149 5.149 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.254 0.746 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.107 0.893 41 H 0.097 0.903 42 H 0.177 0.823 43 H 0.226 0.774 44 H 0.104 0.896 45 H 0.100 0.900 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.364 -0.297 34.448 34.451 hybrid contribution 1.841 2.662 -0.807 3.336 sum 1.478 2.365 33.640 33.756 Atomic orbital electron populations 1.21695 0.93026 1.02158 1.02287 1.22749 0.96672 0.96479 0.88210 0.89834 1.21642 0.96633 0.91397 0.86233 0.91009 1.45799 1.70046 1.15621 1.04387 1.20062 0.76082 0.87661 0.83918 1.90699 1.48734 1.21144 1.83613 1.23371 1.06179 1.01893 0.96533 1.85618 1.90130 1.19958 0.96883 1.23247 1.53203 0.98509 0.94316 0.89827 1.26130 0.94567 0.99309 0.99187 1.70193 1.46943 1.23797 1.13919 0.84900 0.77908 0.77645 0.77454 1.17947 1.19972 1.20010 1.22709 0.97904 1.00633 0.96120 1.23042 0.89642 1.01163 0.94042 1.65269 1.18945 1.37380 1.02008 1.20545 1.02983 0.91792 0.84901 1.22260 0.92237 0.98098 0.96924 1.21681 0.98785 1.09597 1.01335 1.23136 0.87490 0.98413 0.99960 1.48884 1.06139 1.38281 1.23479 1.22136 1.00678 0.93294 0.88513 1.77283 1.22291 1.13965 1.01409 0.91172 0.91810 0.93196 0.74644 0.87116 0.87092 0.92032 0.92033 0.90703 0.91454 0.90392 0.89335 0.90337 0.82307 0.77405 0.89601 0.89997 0.86687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 9.34 71.98 0.67 -1.83 16 2 C 0.07 1.21 2.58 45.06 0.12 1.33 16 3 H 0.08 1.13 7.61 -2.38 -0.02 1.11 16 4 C 0.15 3.55 2.96 45.88 0.14 3.69 16 5 H 0.07 2.23 7.26 -2.38 -0.02 2.21 16 6 N -0.70 -17.58 5.02 -438.29 -2.20 -19.78 16 7 C 0.54 19.69 7.85 87.66 0.69 20.38 16 8 O -0.56 -26.43 15.51 -3.02 -0.05 -26.48 16 9 C -0.13 -5.03 6.16 71.24 0.44 -4.59 16 10 S -0.15 -8.52 20.57 -56.49 -1.16 -9.68 16 11 C -0.54 -31.09 9.50 67.95 0.65 -30.44 16 12 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 13 C 0.01 0.72 5.49 84.86 0.47 1.19 16 14 N -0.91 -56.26 13.22 21.65 0.29 -55.98 16 15 Si 1.00 43.61 29.55 68.60 2.03 45.64 16 16 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 17 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 18 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 19 C -0.13 -3.07 6.79 31.49 0.21 -2.86 16 20 C 0.05 0.86 6.11 86.45 0.53 1.39 16 21 N -0.51 -9.58 5.01 -861.19 -4.31 -13.89 16 22 C 0.13 2.04 5.34 85.56 0.46 2.49 16 23 C 0.07 1.36 6.39 43.10 0.28 1.64 16 24 C -0.28 -4.22 10.73 21.99 0.24 -3.99 16 25 C 0.06 0.67 11.49 83.54 0.96 1.63 16 26 N -0.39 -6.02 4.01 -369.56 -1.48 -7.51 16 27 C 0.09 0.67 11.47 127.77 1.47 2.13 16 28 N -0.33 -7.31 12.58 -47.38 -0.60 -7.91 16 29 H 0.07 1.12 7.31 -2.39 -0.02 1.11 16 30 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.05 1.10 8.12 -2.38 -0.02 1.09 16 32 H 0.42 7.24 8.38 -92.71 -0.78 6.46 16 33 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 34 H 0.11 3.86 8.14 -2.39 -0.02 3.85 16 35 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 36 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.07 1.74 7.95 -2.38 -0.02 1.72 16 38 H 0.07 0.93 7.75 -2.39 -0.02 0.91 16 39 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.09 1.42 7.18 -2.39 -0.02 1.40 16 41 H 0.08 0.92 7.77 -2.39 -0.02 0.90 16 42 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 43 H 0.21 0.68 8.06 -2.91 -0.02 0.65 16 44 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 45 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 46 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 Total: -1.00 -83.58 395.69 0.01 -83.57 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: 0.20 Total: 19.84 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: 7.30 Total: -7.83 kcal Atomic # 7 Polarization: -96.76 SS G_CDS: -8.31 Total: -105.06 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -0.05 Total: -26.48 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.68 kcal Total: -83.58 0.01 -83.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707242803.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.272 kcal (2) G-P(sol) polarization free energy of solvation -83.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds