Wall clock time and date at job start Tue Mar 31 2020 21:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 5 5 O 1.21280 * 119.99781 * 240.00479 * 4 2 1 6 6 N 1.34780 * 119.99795 * 59.99803 * 4 2 1 7 7 C 1.46497 * 119.99566 * 180.02562 * 6 4 2 8 8 C 1.52997 * 109.46983 * 180.02562 * 7 6 4 9 9 H 1.09006 * 110.88821 * 305.70055 * 8 7 6 10 10 C 1.55155 * 111.00566 * 181.82090 * 8 7 6 11 11 C 1.54369 * 102.92344 * 206.45174 * 10 8 7 12 12 N 1.47026 * 107.28610 * 22.13848 * 11 10 8 13 13 C 1.36937 * 125.64661 * 181.05560 * 12 11 10 14 14 H 1.08009 * 119.99677 * 180.02562 * 13 12 11 15 15 C 1.38811 * 120.00440 * 0.04285 * 13 12 11 16 16 N 1.31620 * 119.99455 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00272 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46930 * 89.99888 * 17 15 13 19 19 H 1.48494 * 109.47205 * 210.00027 * 17 15 13 20 20 H 1.48497 * 109.47134 * 330.00187 * 17 15 13 21 21 C 1.47419 * 108.70326 * 1.09137 * 12 11 10 22 22 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 23 23 C 1.38234 * 119.98357 * 59.99860 * 22 2 1 24 24 C 1.38186 * 120.04343 * 179.97438 * 23 22 2 25 25 C 1.38493 * 120.03046 * 359.97438 * 24 23 22 26 26 F 1.35106 * 120.01434 * 179.97438 * 25 24 23 27 27 C 1.38395 * 119.97218 * 0.02562 * 25 24 23 28 28 C 1.38439 * 119.95079 * 359.76386 * 27 25 24 29 29 F 1.35098 * 120.01407 * 180.23230 * 28 27 25 30 30 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 31 31 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 33 33 H 0.96995 * 120.00011 * 0.02562 * 6 4 2 34 34 H 1.09001 * 109.47487 * 300.00114 * 7 6 4 35 35 H 1.09002 * 109.47182 * 60.00342 * 7 6 4 36 36 H 1.08992 * 110.72211 * 324.78955 * 10 8 7 37 37 H 1.09008 * 110.72267 * 88.06350 * 10 8 7 38 38 H 1.08999 * 109.84820 * 262.73551 * 11 10 8 39 39 H 1.08995 * 110.03390 * 141.64875 * 11 10 8 40 40 H 0.97002 * 119.99639 * 180.02562 * 16 15 13 41 41 H 1.09000 * 110.36951 * 217.02897 * 21 12 11 42 42 H 1.09002 * 110.45801 * 94.75824 * 21 12 11 43 43 H 1.07997 * 119.97891 * 359.97438 * 23 22 2 44 44 H 1.08007 * 119.98231 * 179.97438 * 24 23 22 45 45 H 1.08003 * 120.02197 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4546 7 6 2.1948 -0.9409 -3.6507 8 6 1.6854 -0.2193 -4.8999 9 1 0.6005 -0.1166 -4.8742 10 6 2.1445 -0.9492 -6.1898 11 6 2.1705 0.1845 -7.2373 12 7 2.2927 1.4534 -6.5048 13 6 2.3295 2.7004 -7.0694 14 1 2.4221 3.5747 -6.4419 15 6 2.2473 2.8410 -8.4479 16 7 2.1336 1.7756 -9.2123 17 14 2.2967 4.5421 -9.2179 18 1 3.7045 4.9110 -9.5134 19 1 1.5112 4.5381 -10.4780 20 1 1.7139 5.5297 -8.2744 21 6 2.3701 1.1608 -5.0620 22 6 2.0323 -0.7104 1.2305 23 6 1.6981 -2.0338 1.4489 24 6 2.1585 -2.6866 2.5766 25 6 2.9557 -2.0157 3.4889 26 9 3.4052 -2.6540 4.5915 27 6 3.2909 -0.6907 3.2711 28 6 2.8327 -0.0389 2.1389 29 9 3.1630 1.2531 1.9227 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.1494 0.5388 -2.5436 34 1 3.2848 -0.9414 -3.6508 35 1 1.8310 -1.9685 -3.6505 36 1 3.1390 -1.3754 -6.0586 37 1 1.4276 -1.7201 -6.4727 38 1 1.2455 0.1769 -7.8138 39 1 3.0235 0.0575 -7.9038 40 1 2.0766 1.8737 -10.1757 41 1 1.8341 1.9195 -4.4918 42 1 3.4098 1.1087 -4.7390 43 1 1.0768 -2.5580 0.7379 44 1 1.8964 -3.7205 2.7465 45 1 3.9122 -0.1666 3.9823 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713541232.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:42 Heat of formation + Delta-G solvation = -85.241847 kcal Electronic energy + Delta-G solvation = -28637.980936 eV Core-core repulsion = 24291.713181 eV Total energy + Delta-G solvation = -4346.267754 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.34542 -49.31959 -40.43423 -38.85814 -37.64368 -34.72505 -34.44375 -32.49122 -31.16048 -30.02386 -29.34758 -28.21366 -25.78893 -24.96468 -23.75188 -23.38630 -22.19261 -20.49907 -19.99038 -19.57886 -18.59074 -17.80512 -17.13294 -16.80794 -16.45275 -16.23080 -16.04304 -15.61083 -15.52888 -15.45011 -14.81794 -14.68738 -14.53386 -14.27284 -13.96818 -13.61692 -13.31302 -13.18726 -12.96316 -12.70540 -12.38294 -12.32564 -12.09511 -12.01094 -11.78974 -11.57152 -11.55320 -11.39569 -10.92430 -10.81773 -10.43894 -10.17717 -10.03871 -9.91532 -9.75088 -9.67873 -9.38748 -9.02628 -8.95356 -8.62393 -6.85939 -5.73704 -3.07374 0.57366 0.69163 2.54596 2.89501 3.25921 3.38245 3.43130 3.45049 3.51704 3.98590 4.10704 4.20519 4.46028 4.47294 4.61584 4.74805 4.79812 4.91607 5.06668 5.19432 5.25655 5.37617 5.40273 5.45441 5.50333 5.51809 5.56533 5.64597 5.67943 5.76262 5.85942 5.91115 6.00830 6.02410 6.31301 6.38549 6.40352 6.46442 6.49892 6.64857 6.87586 7.46279 7.53546 7.60448 7.80416 8.14676 8.23747 9.19680 9.80096 10.45953 11.38022 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023486 B = 0.002071 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.909438 B =13515.267461 C =14145.885703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.075 4.075 3 H 0.112 0.888 4 C 0.517 3.483 5 O -0.537 6.537 6 N -0.721 5.721 7 C 0.133 3.867 8 C -0.118 4.118 9 H 0.080 0.920 10 C -0.135 4.135 11 C 0.177 3.823 12 N -0.606 5.606 13 C -0.229 4.229 14 H 0.077 0.923 15 C -0.009 4.009 16 N -0.922 5.922 17 Si 0.912 3.088 18 H -0.289 1.289 19 H -0.290 1.290 20 H -0.281 1.281 21 C 0.142 3.858 22 C -0.107 4.107 23 C -0.027 4.027 24 C -0.163 4.163 25 C 0.128 3.872 26 F -0.133 7.133 27 C -0.194 4.194 28 C 0.137 3.863 29 F -0.128 7.128 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.402 0.598 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.046 0.954 39 H 0.043 0.957 40 H 0.252 0.748 41 H 0.035 0.965 42 H 0.019 0.981 43 H 0.142 0.858 44 H 0.143 0.857 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.032 -7.768 24.244 25.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.097 4.097 3 H 0.130 0.870 4 C 0.302 3.698 5 O -0.414 6.414 6 N -0.372 5.372 7 C 0.009 3.991 8 C -0.137 4.137 9 H 0.098 0.902 10 C -0.174 4.174 11 C 0.052 3.948 12 N -0.333 5.333 13 C -0.357 4.357 14 H 0.095 0.905 15 C -0.205 4.205 16 N -0.569 5.569 17 Si 0.743 3.257 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.207 1.207 21 C 0.016 3.984 22 C -0.109 4.109 23 C -0.045 4.045 24 C -0.182 4.182 25 C 0.109 3.891 26 F -0.112 7.112 27 C -0.214 4.214 28 C 0.118 3.882 29 F -0.107 7.107 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.237 0.763 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.053 0.947 42 H 0.036 0.964 43 H 0.160 0.840 44 H 0.161 0.839 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.506 -8.355 24.102 25.749 hybrid contribution 0.080 1.441 -0.403 1.498 sum -3.426 -6.914 23.699 24.923 Atomic orbital electron populations 1.21814 0.91245 1.03297 1.03484 1.20237 0.98288 1.00884 0.90264 0.87007 1.20275 0.80423 0.84686 0.84409 1.90719 1.37634 1.26304 1.86698 1.46046 1.53421 1.32114 1.05578 1.21419 0.99402 0.95658 0.82606 1.22615 1.00417 0.97431 0.93270 0.90209 1.22862 1.00082 0.98985 0.95435 1.21160 1.01058 0.81737 0.90844 1.44479 1.86530 1.02795 0.99458 1.19051 1.43443 0.83065 0.90186 0.90486 1.24814 1.02197 0.97428 0.96086 1.69966 1.56585 1.26609 1.03775 0.86112 0.77543 0.83315 0.78747 1.21596 1.21671 1.20705 1.21569 0.96490 0.92722 0.87652 1.19422 1.00190 0.95328 0.95951 1.20680 0.96535 0.92265 0.95057 1.21185 1.00460 1.01606 0.94987 1.17298 0.96908 0.90254 0.84677 1.91531 1.87374 1.81539 1.50721 1.20943 1.06077 0.94685 0.99702 1.17071 0.97180 0.79208 0.94784 1.91525 1.90718 1.33899 1.94531 0.91003 0.91584 0.91029 0.76291 0.91331 0.91605 0.92211 0.91961 0.93562 0.93872 0.93741 0.94669 0.96358 0.84040 0.83948 0.83417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 8.90 37.16 0.33 -0.59 16 2 C -0.08 -0.68 2.88 -92.92 -0.27 -0.95 16 3 H 0.11 0.96 7.13 -51.93 -0.37 0.59 16 4 C 0.52 6.20 7.02 -10.98 -0.08 6.12 16 5 O -0.54 -8.26 15.11 5.56 0.08 -8.17 16 6 N -0.72 -8.28 5.34 -60.30 -0.32 -8.61 16 7 C 0.13 1.79 5.12 -4.04 -0.02 1.77 16 8 C -0.12 -1.85 3.07 -88.47 -0.27 -2.12 16 9 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 10 C -0.13 -2.38 6.42 -24.87 -0.16 -2.54 16 11 C 0.18 4.19 5.38 -3.04 -0.02 4.18 16 12 N -0.61 -15.15 3.39 -170.04 -0.58 -15.73 16 13 C -0.23 -6.31 10.28 -15.06 -0.15 -6.46 16 14 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 15 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 16 N -0.92 -26.89 10.31 55.49 0.57 -26.31 16 17 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 21 C 0.14 2.76 6.56 -2.53 -0.02 2.75 16 22 C -0.11 -1.05 4.40 -104.54 -0.46 -1.51 16 23 C -0.03 -0.24 7.92 -39.60 -0.31 -0.56 16 24 C -0.16 -1.37 10.02 -39.51 -0.40 -1.76 16 25 C 0.13 1.17 7.30 -39.43 -0.29 0.88 16 26 F -0.13 -1.26 17.27 2.25 0.04 -1.22 16 27 C -0.19 -1.77 10.01 -39.45 -0.39 -2.16 16 28 C 0.14 1.37 7.24 -39.43 -0.29 1.09 16 29 F -0.13 -1.35 16.19 2.25 0.04 -1.32 16 30 H 0.07 0.41 7.56 -51.93 -0.39 0.02 16 31 H 0.07 0.41 7.39 -51.93 -0.38 0.03 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.40 3.90 7.85 -40.82 -0.32 3.58 16 34 H 0.07 1.03 8.03 -51.93 -0.42 0.61 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.06 1.01 8.04 -51.93 -0.42 0.59 16 37 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 38 H 0.05 1.21 7.38 -51.93 -0.38 0.83 16 39 H 0.04 1.15 7.50 -51.93 -0.39 0.76 16 40 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.02 0.37 7.95 -51.93 -0.41 -0.04 16 43 H 0.14 1.14 7.51 -52.49 -0.39 0.75 16 44 H 0.14 0.89 8.06 -52.48 -0.42 0.47 16 45 H 0.15 1.09 8.06 -52.48 -0.42 0.67 16 LS Contribution 375.82 15.07 5.66 5.66 Total: -1.00 -32.26 375.82 -8.80 -41.06 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -6.39 Total: -0.04 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -2.89 Total: -2.21 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: -0.33 Total: -50.65 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: 0.08 Total: -8.17 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.08 Total: -2.54 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.26 -8.80 -41.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713541232.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.181 kcal (2) G-P(sol) polarization free energy of solvation -32.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds