Wall clock time and date at job start Tue Mar 31 2020 21:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 5 5 O 1.21280 * 119.99781 * 240.00479 * 4 2 1 6 6 N 1.34780 * 119.99795 * 59.99803 * 4 2 1 7 7 C 1.46497 * 119.99566 * 180.02562 * 6 4 2 8 8 C 1.52997 * 109.46983 * 180.02562 * 7 6 4 9 9 H 1.09006 * 110.88821 * 305.70055 * 8 7 6 10 10 C 1.55155 * 111.00566 * 181.82090 * 8 7 6 11 11 C 1.54369 * 102.92344 * 206.45174 * 10 8 7 12 12 N 1.47026 * 107.28610 * 22.13848 * 11 10 8 13 13 C 1.36937 * 125.64661 * 181.05560 * 12 11 10 14 14 H 1.08009 * 119.99677 * 180.02562 * 13 12 11 15 15 C 1.38811 * 120.00440 * 0.04285 * 13 12 11 16 16 N 1.31620 * 119.99455 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00272 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46930 * 89.99888 * 17 15 13 19 19 H 1.48494 * 109.47205 * 210.00027 * 17 15 13 20 20 H 1.48497 * 109.47134 * 330.00187 * 17 15 13 21 21 C 1.47419 * 108.70326 * 1.09137 * 12 11 10 22 22 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 23 23 C 1.38234 * 119.98357 * 59.99860 * 22 2 1 24 24 C 1.38186 * 120.04343 * 179.97438 * 23 22 2 25 25 C 1.38493 * 120.03046 * 359.97438 * 24 23 22 26 26 F 1.35106 * 120.01434 * 179.97438 * 25 24 23 27 27 C 1.38395 * 119.97218 * 0.02562 * 25 24 23 28 28 C 1.38439 * 119.95079 * 359.76386 * 27 25 24 29 29 F 1.35098 * 120.01407 * 180.23230 * 28 27 25 30 30 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 31 31 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 33 33 H 0.96995 * 120.00011 * 0.02562 * 6 4 2 34 34 H 1.09001 * 109.47487 * 300.00114 * 7 6 4 35 35 H 1.09002 * 109.47182 * 60.00342 * 7 6 4 36 36 H 1.08992 * 110.72211 * 324.78955 * 10 8 7 37 37 H 1.09008 * 110.72267 * 88.06350 * 10 8 7 38 38 H 1.08999 * 109.84820 * 262.73551 * 11 10 8 39 39 H 1.08995 * 110.03390 * 141.64875 * 11 10 8 40 40 H 0.97002 * 119.99639 * 180.02562 * 16 15 13 41 41 H 1.09000 * 110.36951 * 217.02897 * 21 12 11 42 42 H 1.09002 * 110.45801 * 94.75824 * 21 12 11 43 43 H 1.07997 * 119.97891 * 359.97438 * 23 22 2 44 44 H 1.08007 * 119.98231 * 179.97438 * 24 23 22 45 45 H 1.08003 * 120.02197 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4546 7 6 2.1948 -0.9409 -3.6507 8 6 1.6854 -0.2193 -4.8999 9 1 0.6005 -0.1166 -4.8742 10 6 2.1445 -0.9492 -6.1898 11 6 2.1705 0.1845 -7.2373 12 7 2.2927 1.4534 -6.5048 13 6 2.3295 2.7004 -7.0694 14 1 2.4221 3.5747 -6.4419 15 6 2.2473 2.8410 -8.4479 16 7 2.1336 1.7756 -9.2123 17 14 2.2967 4.5421 -9.2179 18 1 3.7045 4.9110 -9.5134 19 1 1.5112 4.5381 -10.4780 20 1 1.7139 5.5297 -8.2744 21 6 2.3701 1.1608 -5.0620 22 6 2.0323 -0.7104 1.2305 23 6 1.6981 -2.0338 1.4489 24 6 2.1585 -2.6866 2.5766 25 6 2.9557 -2.0157 3.4889 26 9 3.4052 -2.6540 4.5915 27 6 3.2909 -0.6907 3.2711 28 6 2.8327 -0.0389 2.1389 29 9 3.1630 1.2531 1.9227 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.1494 0.5388 -2.5436 34 1 3.2848 -0.9414 -3.6508 35 1 1.8310 -1.9685 -3.6505 36 1 3.1390 -1.3754 -6.0586 37 1 1.4276 -1.7201 -6.4727 38 1 1.2455 0.1769 -7.8138 39 1 3.0235 0.0575 -7.9038 40 1 2.0766 1.8737 -10.1757 41 1 1.8341 1.9195 -4.4918 42 1 3.4098 1.1087 -4.7390 43 1 1.0768 -2.5580 0.7379 44 1 1.8964 -3.7205 2.7465 45 1 3.9122 -0.1666 3.9823 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713541232.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:41 Heat of formation + Delta-G solvation = -103.854101 kcal Electronic energy + Delta-G solvation = -28638.788023 eV Core-core repulsion = 24291.713181 eV Total energy + Delta-G solvation = -4347.074842 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.09786 -50.02840 -41.30935 -39.76895 -39.08258 -36.02057 -35.21177 -34.21740 -31.85560 -31.61846 -30.33777 -29.58724 -27.33123 -25.97298 -25.02978 -24.15847 -23.06900 -21.99124 -21.42808 -20.73916 -19.30525 -18.89232 -18.49474 -17.90642 -17.38354 -16.98483 -16.91613 -16.67830 -16.53018 -16.36671 -16.32157 -15.73666 -15.52945 -15.46821 -15.06993 -14.74547 -14.56137 -14.01353 -13.85640 -13.81481 -13.75541 -13.45489 -13.27325 -13.02074 -12.97161 -12.77096 -12.73958 -12.63173 -12.25461 -12.15501 -12.01659 -11.86602 -11.82941 -11.52426 -11.44551 -10.79439 -10.70034 -10.07736 -10.03555 -9.66320 -8.88995 -7.84601 -5.19952 -0.12587 0.01198 1.46235 1.48028 1.56564 1.62834 2.08872 2.45345 2.49953 2.82103 3.28759 3.33739 3.42833 3.53193 3.62785 3.75054 3.84960 3.95666 4.04735 4.06289 4.10845 4.15601 4.29290 4.47150 4.64006 4.68358 4.73333 4.78795 4.83988 4.87373 4.88039 4.92988 4.94553 5.04766 5.08055 5.10082 5.22151 5.29377 5.37872 5.46560 5.50155 5.68993 5.73026 5.79497 6.21155 6.55906 7.11206 7.23329 7.79192 8.43264 9.25855 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023486 B = 0.002071 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.909438 B =13515.267461 C =14145.885703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.069 4.069 3 H 0.117 0.883 4 C 0.518 3.482 5 O -0.572 6.572 6 N -0.714 5.714 7 C 0.145 3.855 8 C -0.094 4.094 9 H 0.093 0.907 10 C -0.123 4.123 11 C 0.182 3.818 12 N -0.629 5.629 13 C -0.241 4.241 14 H 0.084 0.916 15 C -0.070 4.070 16 N -0.952 5.952 17 Si 0.978 3.022 18 H -0.289 1.289 19 H -0.295 1.295 20 H -0.266 1.266 21 C 0.137 3.863 22 C -0.116 4.116 23 C -0.033 4.033 24 C -0.159 4.159 25 C 0.118 3.882 26 F -0.137 7.137 27 C -0.196 4.196 28 C 0.121 3.879 29 F -0.135 7.135 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.413 0.587 34 H 0.054 0.946 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.013 0.987 39 H 0.002 0.998 40 H 0.246 0.754 41 H 0.050 0.950 42 H 0.015 0.985 43 H 0.151 0.849 44 H 0.163 0.837 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.067 -7.783 26.035 27.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.090 4.090 3 H 0.135 0.865 4 C 0.305 3.695 5 O -0.451 6.451 6 N -0.366 5.366 7 C 0.021 3.979 8 C -0.114 4.114 9 H 0.111 0.889 10 C -0.162 4.162 11 C 0.057 3.943 12 N -0.356 5.356 13 C -0.370 4.370 14 H 0.101 0.899 15 C -0.262 4.262 16 N -0.601 5.601 17 Si 0.806 3.194 18 H -0.216 1.216 19 H -0.221 1.221 20 H -0.191 1.191 21 C 0.012 3.988 22 C -0.117 4.117 23 C -0.051 4.051 24 C -0.177 4.177 25 C 0.099 3.901 26 F -0.115 7.115 27 C -0.215 4.215 28 C 0.101 3.899 29 F -0.113 7.113 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.250 0.750 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.105 0.895 38 H 0.031 0.969 39 H 0.020 0.980 40 H 0.055 0.945 41 H 0.068 0.932 42 H 0.033 0.967 43 H 0.169 0.831 44 H 0.181 0.819 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -4.555 -8.350 25.939 27.628 hybrid contribution 0.445 1.432 -0.913 1.756 sum -4.110 -6.918 25.026 26.288 Atomic orbital electron populations 1.21846 0.89068 1.03988 1.04625 1.20243 0.99976 1.00415 0.88415 0.86549 1.20728 0.79574 0.84185 0.85015 1.90706 1.39208 1.27996 1.87194 1.45936 1.53343 1.32318 1.04978 1.21144 0.98513 0.96021 0.82204 1.22416 1.00757 0.94804 0.93375 0.88871 1.22724 1.01639 0.97392 0.94399 1.20935 0.97569 0.83811 0.91999 1.44816 1.86309 1.02431 1.02012 1.19472 1.42296 0.84546 0.90662 0.89860 1.25672 1.02760 1.01021 0.96781 1.70195 1.57981 1.28534 1.03435 0.85081 0.77210 0.79397 0.77672 1.21608 1.22140 1.19077 1.21766 0.96877 0.95371 0.84809 1.19598 1.00194 0.95794 0.96120 1.20839 0.96753 0.92092 0.95406 1.21435 0.99482 1.02504 0.94328 1.17423 0.97419 0.90413 0.84893 1.91522 1.87491 1.81577 1.50924 1.21103 1.05899 0.94841 0.99693 1.17214 0.97974 0.79187 0.95484 1.91504 1.90895 1.34316 1.94634 0.89915 0.91141 0.89874 0.75011 0.92719 0.90409 0.91293 0.89469 0.96870 0.98001 0.94483 0.93189 0.96722 0.83127 0.81925 0.82235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 8.90 71.98 0.64 -0.76 16 2 C -0.07 -1.11 2.88 -12.28 -0.04 -1.15 16 3 H 0.12 1.77 7.13 -2.39 -0.02 1.75 16 4 C 0.52 11.33 7.02 87.66 0.62 11.95 16 5 O -0.57 -16.66 15.11 -3.03 -0.05 -16.71 16 6 N -0.71 -14.53 5.34 -463.06 -2.47 -17.00 16 7 C 0.15 3.55 5.12 86.38 0.44 4.00 16 8 C -0.09 -2.74 3.07 -9.40 -0.03 -2.77 16 9 H 0.09 2.54 8.14 -2.38 -0.02 2.52 16 10 C -0.12 -4.18 6.42 31.80 0.20 -3.97 16 11 C 0.18 8.83 5.38 86.74 0.47 9.29 16 12 N -0.63 -31.60 3.39 -691.90 -2.35 -33.94 16 13 C -0.24 -13.32 10.28 84.03 0.86 -12.46 16 14 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 15 C -0.07 -3.95 5.49 84.86 0.47 -3.48 16 16 N -0.95 -57.34 10.31 21.65 0.22 -57.12 16 17 Si 0.98 45.49 29.55 68.60 2.03 47.52 16 18 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 19 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 20 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 21 C 0.14 5.14 6.56 86.86 0.57 5.71 16 22 C -0.12 -2.08 4.40 -19.81 -0.09 -2.16 16 23 C -0.03 -0.53 7.92 22.26 0.18 -0.35 16 24 C -0.16 -2.38 10.02 22.32 0.22 -2.15 16 25 C 0.12 2.00 7.30 22.37 0.16 2.17 16 26 F -0.14 -2.43 17.27 44.97 0.78 -1.65 16 27 C -0.20 -3.36 10.01 22.36 0.22 -3.13 16 28 C 0.12 2.29 7.24 22.37 0.16 2.45 16 29 F -0.13 -2.72 16.19 44.97 0.73 -2.00 16 30 H 0.08 0.67 7.56 -2.39 -0.02 0.65 16 31 H 0.07 0.67 7.39 -2.39 -0.02 0.65 16 32 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.41 6.71 7.85 -92.71 -0.73 5.98 16 34 H 0.05 1.53 8.03 -2.39 -0.02 1.51 16 35 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.07 2.23 8.04 -2.39 -0.02 2.21 16 37 H 0.09 2.56 8.14 -2.38 -0.02 2.54 16 38 H 0.01 0.71 7.38 -2.39 -0.02 0.69 16 39 H 0.00 0.10 7.50 -2.39 -0.02 0.08 16 40 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 41 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.01 0.58 7.95 -2.39 -0.02 0.56 16 43 H 0.15 2.11 7.51 -2.91 -0.02 2.09 16 44 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 45 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -71.34 375.82 4.24 -67.10 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 0.29 Total: 10.63 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: 5.07 Total: 3.17 kcal Atomic # 7 Polarization: -103.46 SS G_CDS: -4.60 Total: -108.06 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.05 Total: -16.71 kcal Atomic # 9 Polarization: -5.15 SS G_CDS: 1.50 Total: -3.65 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -71.34 4.24 -67.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713541232.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.756 kcal (2) G-P(sol) polarization free energy of solvation -71.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds