Wall clock time and date at job start Tue Mar 31 2020 21:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47333 * 2 1 4 4 C 1.50699 * 109.46813 * 239.99586 * 2 1 3 5 5 O 1.21287 * 120.00050 * 240.00345 * 4 2 1 6 6 N 1.34772 * 120.00038 * 60.00550 * 4 2 1 7 7 C 1.46503 * 120.00135 * 179.97438 * 6 4 2 8 8 C 1.52995 * 109.47185 * 179.97438 * 7 6 4 9 9 H 1.09006 * 109.47339 * 294.99826 * 8 7 6 10 10 N 1.46497 * 109.47188 * 55.00438 * 8 7 6 11 11 C 1.36942 * 119.99991 * 204.99975 * 10 8 7 12 12 H 1.07994 * 119.99960 * 359.97438 * 11 10 8 13 13 C 1.38807 * 119.99855 * 179.97438 * 11 10 8 14 14 N 1.31623 * 120.00426 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99950 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47016 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47385 * 119.99886 * 15 13 11 18 18 H 1.48497 * 109.47078 * 239.99680 * 15 13 11 19 19 C 1.53002 * 109.47044 * 175.00359 * 8 7 6 20 20 C 1.53002 * 117.49620 * 248.74814 * 19 8 7 21 21 C 1.53000 * 117.50063 * 180.09041 * 19 8 7 22 22 C 1.50698 * 109.46867 * 120.00001 * 2 1 3 23 23 C 1.38415 * 120.02708 * 239.99837 * 22 2 1 24 24 F 1.35099 * 120.00946 * 359.97438 * 23 22 2 25 25 C 1.38474 * 119.97981 * 179.97438 * 23 22 2 26 26 C 1.38210 * 120.02023 * 0.28104 * 25 23 22 27 27 C 1.38201 * 120.05118 * 359.44081 * 26 25 23 28 28 C 1.38420 * 120.02535 * 59.97344 * 22 2 1 29 29 F 1.35097 * 120.01373 * 0.02562 * 28 22 2 30 30 H 1.09000 * 109.47040 * 300.00672 * 1 2 3 31 31 H 1.09001 * 109.46748 * 60.00121 * 1 2 3 32 32 H 1.08996 * 109.47333 * 179.97438 * 1 2 3 33 33 H 0.96999 * 119.99974 * 359.97438 * 6 4 2 34 34 H 1.09002 * 109.47379 * 300.00220 * 7 6 4 35 35 H 1.09004 * 109.46968 * 59.99702 * 7 6 4 36 36 H 0.96998 * 119.99921 * 24.99549 * 10 8 7 37 37 H 0.96996 * 119.99790 * 180.02562 * 14 13 11 38 38 H 1.09003 * 115.55353 * 34.41502 * 19 8 7 39 39 H 1.08996 * 117.50233 * 0.02562 * 20 19 8 40 40 H 1.08999 * 117.49805 * 145.02253 * 20 19 8 41 41 H 1.09002 * 117.50128 * 214.97814 * 21 19 8 42 42 H 1.09002 * 117.49876 * 359.96968 * 21 19 8 43 43 H 1.08002 * 119.98641 * 179.97438 * 25 23 22 44 44 H 1.08000 * 119.96986 * 179.70463 * 26 25 23 45 45 H 1.08002 * 119.98829 * 180.25980 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7295 -1.6967 -1.1191 6 7 1.7068 -0.2501 -2.4545 7 6 2.1955 -0.9405 -3.6507 8 6 1.6849 -0.2197 -4.8999 9 1 0.5986 -0.2973 -4.9458 10 7 2.0716 1.1921 -4.8414 11 6 1.3433 2.1303 -5.5231 12 1 0.4842 1.8294 -6.1041 13 6 1.7094 3.4681 -5.4672 14 7 2.7563 3.8350 -4.7587 15 14 0.7156 4.7480 -6.3964 16 1 -0.4039 4.0829 -7.1103 17 1 0.1706 5.7430 -5.4382 18 1 1.5902 5.4356 -7.3800 19 6 2.2953 -0.8644 -6.1460 20 6 3.3100 -0.0414 -6.9422 21 6 1.9071 -0.2805 -7.5058 22 6 2.0323 -0.7104 1.2305 23 6 2.8281 -0.0383 2.1420 24 9 3.1554 1.2550 1.9286 25 6 3.2887 -0.6919 3.2726 26 6 2.9587 -2.0166 3.4881 27 6 2.1595 -2.6871 2.5816 28 6 1.6977 -2.0355 1.4503 29 9 0.9211 -2.6927 0.5615 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.1489 0.5384 -2.5435 34 1 3.2855 -0.9402 -3.6506 35 1 1.8325 -1.9683 -3.6508 36 1 2.8435 1.4623 -4.3199 37 1 3.0118 4.7698 -4.7195 38 1 2.4554 -1.9411 -6.0878 39 1 3.5431 0.9592 -6.5781 40 1 4.1374 -0.5766 -7.4082 41 1 1.8120 -0.9728 -8.3423 42 1 1.2164 0.5628 -7.5128 43 1 3.9100 -0.1677 3.9836 44 1 3.3223 -2.5269 4.3677 45 1 1.8988 -3.7210 2.7531 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713872236.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:53 Heat of formation + Delta-G solvation = -65.252316 kcal Electronic energy + Delta-G solvation = -29766.951576 eV Core-core repulsion = 25421.550634 eV Total energy + Delta-G solvation = -4345.400943 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.10388 -48.99212 -39.89212 -38.65919 -37.59247 -34.48007 -34.32159 -33.24444 -30.91501 -30.42652 -29.66717 -28.01471 -24.96905 -23.78854 -23.03964 -22.93296 -21.84247 -21.40935 -19.92968 -19.02128 -18.22764 -17.73159 -17.30158 -16.69352 -16.19414 -15.85620 -15.63994 -15.45894 -15.31215 -15.15703 -14.81617 -14.58061 -14.47166 -14.06907 -13.76205 -13.56488 -13.12828 -12.90763 -12.85944 -12.66198 -12.38229 -12.22131 -12.04739 -11.96400 -11.55174 -11.29160 -11.18261 -10.97661 -10.90499 -10.85635 -10.52434 -10.10407 -9.72408 -9.61936 -9.44064 -9.18169 -9.01609 -8.96689 -8.85404 -8.60672 -7.08507 -5.85399 -3.15697 0.81117 0.86507 2.93940 3.15235 3.37178 3.43929 3.45904 3.59133 3.80086 4.22277 4.29284 4.48404 4.51999 4.60282 4.63232 4.95721 5.01434 5.07945 5.22512 5.37083 5.45514 5.54702 5.59518 5.63476 5.64756 5.73825 5.78216 5.83013 5.84473 5.92188 5.96873 5.98231 6.05505 6.09415 6.09506 6.38193 6.46431 6.61935 6.64878 6.75038 6.90672 7.00459 7.27266 7.64507 7.92681 8.31602 8.56193 9.44089 9.97854 10.34117 11.36032 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014133 B = 0.003164 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.706559 B = 8847.475197 C = 9968.999169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.074 4.074 3 H 0.115 0.885 4 C 0.519 3.481 5 O -0.546 6.546 6 N -0.708 5.708 7 C 0.120 3.880 8 C 0.192 3.808 9 H 0.057 0.943 10 N -0.717 5.717 11 C -0.240 4.240 12 H 0.072 0.928 13 C -0.008 4.008 14 N -0.927 5.927 15 Si 0.902 3.098 16 H -0.281 1.281 17 H -0.292 1.292 18 H -0.292 1.292 19 C -0.178 4.178 20 C -0.163 4.163 21 C -0.175 4.175 22 C -0.135 4.135 23 C 0.136 3.864 24 F -0.128 7.128 25 C -0.170 4.170 26 C -0.064 4.064 27 C -0.171 4.171 28 C 0.164 3.836 29 F -0.122 7.122 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.410 0.590 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.386 0.614 37 H 0.255 0.745 38 H 0.085 0.915 39 H 0.118 0.882 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.102 0.898 43 H 0.141 0.859 44 H 0.141 0.859 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.516 -11.254 14.796 18.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.096 4.096 3 H 0.133 0.867 4 C 0.304 3.696 5 O -0.424 6.424 6 N -0.359 5.359 7 C -0.004 4.004 8 C 0.081 3.919 9 H 0.075 0.925 10 N -0.359 5.359 11 C -0.371 4.371 12 H 0.090 0.910 13 C -0.204 4.204 14 N -0.575 5.575 15 Si 0.733 3.267 16 H -0.206 1.206 17 H -0.219 1.219 18 H -0.219 1.219 19 C -0.199 4.199 20 C -0.200 4.200 21 C -0.212 4.212 22 C -0.137 4.137 23 C 0.116 3.884 24 F -0.106 7.106 25 C -0.189 4.189 26 C -0.082 4.082 27 C -0.190 4.190 28 C 0.144 3.856 29 F -0.100 7.100 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.247 0.753 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.221 0.779 37 H 0.065 0.935 38 H 0.103 0.897 39 H 0.137 0.863 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.121 0.879 43 H 0.159 0.841 44 H 0.159 0.841 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.171 -11.813 14.705 18.987 hybrid contribution -0.398 1.382 -0.789 1.641 sum -2.569 -10.431 13.916 17.580 Atomic orbital electron populations 1.21852 0.91424 1.03571 1.03490 1.20178 0.98327 1.01059 0.90007 0.86665 1.20132 0.80442 0.84487 0.84534 1.90674 1.38346 1.26504 1.86854 1.45884 1.53011 1.32144 1.04860 1.21578 0.99409 0.95341 0.84086 1.19990 0.96999 0.85536 0.89327 0.92513 1.42486 1.34711 0.99825 1.58909 1.19207 1.07661 0.87184 1.23016 0.91007 1.24710 0.98142 0.97110 1.00460 1.69668 1.27316 1.16216 1.44301 0.86204 0.79258 0.82041 0.79175 1.20590 1.21937 1.21929 1.23067 1.05451 0.97182 0.94233 1.22910 0.91184 1.02995 1.02910 1.22848 1.00215 1.03074 0.95080 1.19422 1.02359 0.94160 0.97746 1.17192 0.96934 0.79230 0.95009 1.91537 1.90620 1.33743 1.94685 1.21131 1.03953 0.96014 0.97778 1.20794 0.95529 0.93200 0.98675 1.21171 1.01708 1.01560 0.94534 1.17073 0.91919 0.89055 0.87570 1.91512 1.71415 1.80239 1.66809 0.91340 0.90698 0.91306 0.75300 0.91738 0.91863 0.77931 0.93490 0.89654 0.86348 0.91310 0.91034 0.87939 0.84075 0.84095 0.84165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.88 37.16 0.33 -1.39 16 2 C -0.07 -1.05 2.79 -92.92 -0.26 -1.31 16 3 H 0.12 1.62 7.13 -51.93 -0.37 1.25 16 4 C 0.52 8.81 6.60 -10.99 -0.07 8.74 16 5 O -0.55 -10.75 14.56 5.55 0.08 -10.67 16 6 N -0.71 -11.84 5.28 -60.29 -0.32 -12.16 16 7 C 0.12 2.07 5.21 -4.04 -0.02 2.05 16 8 C 0.19 3.53 2.86 -67.93 -0.19 3.34 16 9 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 10 N -0.72 -15.87 3.08 -53.43 -0.16 -16.03 16 11 C -0.24 -5.93 8.16 -15.06 -0.12 -6.05 16 12 H 0.07 1.76 6.91 -52.49 -0.36 1.40 16 13 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 14 N -0.93 -26.15 13.06 55.49 0.72 -25.42 16 15 Si 0.90 21.24 29.55 -169.99 -5.02 16.22 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 19 C -0.18 -3.11 5.71 -90.62 -0.52 -3.63 16 20 C -0.16 -3.07 9.74 -26.69 -0.26 -3.33 16 21 C -0.18 -3.13 9.87 -26.69 -0.26 -3.39 16 22 C -0.13 -1.84 4.41 -104.49 -0.46 -2.30 16 23 C 0.14 1.71 7.25 -39.43 -0.29 1.42 16 24 F -0.13 -1.73 16.19 2.25 0.04 -1.69 16 25 C -0.17 -1.64 10.03 -39.50 -0.40 -2.04 16 26 C -0.06 -0.53 10.04 -39.61 -0.40 -0.93 16 27 C -0.17 -1.72 10.02 -39.51 -0.40 -2.11 16 28 C 0.16 2.14 6.13 -39.43 -0.24 1.90 16 29 F -0.12 -1.76 13.81 2.25 0.03 -1.73 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.85 7.56 -51.93 -0.39 0.46 16 32 H 0.07 0.83 6.31 -51.93 -0.33 0.50 16 33 H 0.41 6.85 7.56 -40.82 -0.31 6.54 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.39 9.45 7.80 -40.82 -0.32 9.13 16 37 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 38 H 0.09 1.35 8.11 -51.93 -0.42 0.93 16 39 H 0.12 2.66 6.68 -51.93 -0.35 2.32 16 40 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.10 2.04 6.22 -51.93 -0.32 1.72 16 43 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 44 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 45 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 375.59 15.07 5.66 5.66 Total: -1.00 -29.42 375.59 -8.74 -38.16 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: -6.11 Total: 17.01 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: -3.65 Total: -9.33 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: 0.24 Total: -53.62 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.08 Total: -10.67 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.07 Total: -3.42 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.42 -8.74 -38.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713872236.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.092 kcal (2) G-P(sol) polarization free energy of solvation -29.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds