Wall clock time and date at job start Tue Mar 31 2020 21:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47333 * 2 1 4 4 C 1.50699 * 109.46813 * 239.99586 * 2 1 3 5 5 O 1.21287 * 120.00050 * 240.00345 * 4 2 1 6 6 N 1.34772 * 120.00038 * 60.00550 * 4 2 1 7 7 C 1.46503 * 120.00135 * 179.97438 * 6 4 2 8 8 C 1.52995 * 109.47185 * 179.97438 * 7 6 4 9 9 H 1.09006 * 109.47339 * 294.99826 * 8 7 6 10 10 N 1.46497 * 109.47188 * 55.00438 * 8 7 6 11 11 C 1.36942 * 119.99991 * 204.99975 * 10 8 7 12 12 H 1.07994 * 119.99960 * 359.97438 * 11 10 8 13 13 C 1.38807 * 119.99855 * 179.97438 * 11 10 8 14 14 N 1.31623 * 120.00426 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99950 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47016 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47385 * 119.99886 * 15 13 11 18 18 H 1.48497 * 109.47078 * 239.99680 * 15 13 11 19 19 C 1.53002 * 109.47044 * 175.00359 * 8 7 6 20 20 C 1.53002 * 117.49620 * 248.74814 * 19 8 7 21 21 C 1.53000 * 117.50063 * 180.09041 * 19 8 7 22 22 C 1.50698 * 109.46867 * 120.00001 * 2 1 3 23 23 C 1.38415 * 120.02708 * 239.99837 * 22 2 1 24 24 F 1.35099 * 120.00946 * 359.97438 * 23 22 2 25 25 C 1.38474 * 119.97981 * 179.97438 * 23 22 2 26 26 C 1.38210 * 120.02023 * 0.28104 * 25 23 22 27 27 C 1.38201 * 120.05118 * 359.44081 * 26 25 23 28 28 C 1.38420 * 120.02535 * 59.97344 * 22 2 1 29 29 F 1.35097 * 120.01373 * 0.02562 * 28 22 2 30 30 H 1.09000 * 109.47040 * 300.00672 * 1 2 3 31 31 H 1.09001 * 109.46748 * 60.00121 * 1 2 3 32 32 H 1.08996 * 109.47333 * 179.97438 * 1 2 3 33 33 H 0.96999 * 119.99974 * 359.97438 * 6 4 2 34 34 H 1.09002 * 109.47379 * 300.00220 * 7 6 4 35 35 H 1.09004 * 109.46968 * 59.99702 * 7 6 4 36 36 H 0.96998 * 119.99921 * 24.99549 * 10 8 7 37 37 H 0.96996 * 119.99790 * 180.02562 * 14 13 11 38 38 H 1.09003 * 115.55353 * 34.41502 * 19 8 7 39 39 H 1.08996 * 117.50233 * 0.02562 * 20 19 8 40 40 H 1.08999 * 117.49805 * 145.02253 * 20 19 8 41 41 H 1.09002 * 117.50128 * 214.97814 * 21 19 8 42 42 H 1.09002 * 117.49876 * 359.96968 * 21 19 8 43 43 H 1.08002 * 119.98641 * 179.97438 * 25 23 22 44 44 H 1.08000 * 119.96986 * 179.70463 * 26 25 23 45 45 H 1.08002 * 119.98829 * 180.25980 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7295 -1.6967 -1.1191 6 7 1.7068 -0.2501 -2.4545 7 6 2.1955 -0.9405 -3.6507 8 6 1.6849 -0.2197 -4.8999 9 1 0.5986 -0.2973 -4.9458 10 7 2.0716 1.1921 -4.8414 11 6 1.3433 2.1303 -5.5231 12 1 0.4842 1.8294 -6.1041 13 6 1.7094 3.4681 -5.4672 14 7 2.7563 3.8350 -4.7587 15 14 0.7156 4.7480 -6.3964 16 1 -0.4039 4.0829 -7.1103 17 1 0.1706 5.7430 -5.4382 18 1 1.5902 5.4356 -7.3800 19 6 2.2953 -0.8644 -6.1460 20 6 3.3100 -0.0414 -6.9422 21 6 1.9071 -0.2805 -7.5058 22 6 2.0323 -0.7104 1.2305 23 6 2.8281 -0.0383 2.1420 24 9 3.1554 1.2550 1.9286 25 6 3.2887 -0.6919 3.2726 26 6 2.9587 -2.0166 3.4881 27 6 2.1595 -2.6871 2.5816 28 6 1.6977 -2.0355 1.4503 29 9 0.9211 -2.6927 0.5615 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.1489 0.5384 -2.5435 34 1 3.2855 -0.9402 -3.6506 35 1 1.8325 -1.9683 -3.6508 36 1 2.8435 1.4623 -4.3199 37 1 3.0118 4.7698 -4.7195 38 1 2.4554 -1.9411 -6.0878 39 1 3.5431 0.9592 -6.5781 40 1 4.1374 -0.5766 -7.4082 41 1 1.8120 -0.9728 -8.3423 42 1 1.2164 0.5628 -7.5128 43 1 3.9100 -0.1677 3.9836 44 1 3.3223 -2.5269 4.3677 45 1 1.8988 -3.7210 2.7531 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713872236.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:51 Heat of formation + Delta-G solvation = -81.350075 kcal Electronic energy + Delta-G solvation = -29767.649628 eV Core-core repulsion = 25421.550634 eV Total energy + Delta-G solvation = -4346.098994 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -50.06685 -49.97633 -41.13927 -39.68243 -39.06145 -35.93056 -35.39527 -35.04571 -32.59904 -31.24136 -30.72915 -29.56791 -26.14705 -25.45861 -24.38033 -23.83834 -23.13673 -22.74037 -21.28220 -20.48012 -19.28979 -19.10072 -18.70807 -17.83447 -17.35008 -16.95465 -16.75747 -16.57961 -16.46586 -16.32787 -16.29490 -16.11973 -15.49584 -15.34433 -15.33730 -14.87258 -14.53753 -14.44810 -13.93859 -13.75156 -13.45018 -13.31839 -13.09437 -12.93727 -12.89496 -12.86902 -12.66084 -12.59322 -12.49092 -12.11283 -11.94219 -11.92603 -11.60068 -11.05848 -11.02899 -10.78026 -10.62473 -10.03528 -9.87987 -9.70225 -9.00104 -7.88711 -5.16603 -0.02833 0.02904 1.48004 1.50895 1.57947 1.59560 2.15289 2.47780 2.58189 2.93396 3.12622 3.26155 3.43588 3.46515 3.58874 3.85467 3.86965 3.90578 3.99399 4.06446 4.22208 4.25701 4.26760 4.32449 4.48419 4.57129 4.61704 4.67886 4.73709 4.84341 4.90593 4.92241 4.96077 5.03777 5.07870 5.14670 5.17207 5.21763 5.24109 5.41261 5.53135 5.66484 5.67541 5.80987 6.31099 6.54488 7.19415 7.39586 8.09730 8.35449 9.33831 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014133 B = 0.003164 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.706559 B = 8847.475197 C = 9968.999169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.072 4.072 3 H 0.109 0.891 4 C 0.517 3.483 5 O -0.574 6.574 6 N -0.707 5.707 7 C 0.130 3.870 8 C 0.194 3.806 9 H 0.061 0.939 10 N -0.720 5.720 11 C -0.217 4.217 12 H 0.077 0.923 13 C -0.066 4.066 14 N -0.964 5.964 15 Si 0.957 3.043 16 H -0.267 1.267 17 H -0.298 1.298 18 H -0.303 1.303 19 C -0.169 4.169 20 C -0.174 4.174 21 C -0.168 4.168 22 C -0.157 4.157 23 C 0.110 3.890 24 F -0.141 7.141 25 C -0.162 4.162 26 C -0.049 4.049 27 C -0.166 4.166 28 C 0.135 3.865 29 F -0.137 7.137 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.410 0.590 34 H 0.049 0.951 35 H 0.078 0.922 36 H 0.373 0.627 37 H 0.247 0.753 38 H 0.114 0.886 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.079 0.921 43 H 0.168 0.832 44 H 0.186 0.814 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.105 -13.244 15.895 20.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.093 4.093 3 H 0.127 0.873 4 C 0.303 3.697 5 O -0.454 6.454 6 N -0.358 5.358 7 C 0.005 3.995 8 C 0.085 3.915 9 H 0.079 0.921 10 N -0.360 5.360 11 C -0.349 4.349 12 H 0.095 0.905 13 C -0.259 4.259 14 N -0.615 5.615 15 Si 0.788 3.212 16 H -0.192 1.192 17 H -0.226 1.226 18 H -0.231 1.231 19 C -0.191 4.191 20 C -0.211 4.211 21 C -0.205 4.205 22 C -0.159 4.159 23 C 0.091 3.909 24 F -0.120 7.120 25 C -0.180 4.180 26 C -0.067 4.067 27 C -0.185 4.185 28 C 0.115 3.885 29 F -0.116 7.116 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.247 0.753 34 H 0.067 0.933 35 H 0.096 0.904 36 H 0.206 0.794 37 H 0.056 0.944 38 H 0.132 0.868 39 H 0.095 0.905 40 H 0.108 0.892 41 H 0.120 0.880 42 H 0.098 0.902 43 H 0.186 0.814 44 H 0.203 0.797 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -2.801 -13.839 15.786 21.179 hybrid contribution -0.185 1.883 -1.082 2.179 sum -2.986 -11.956 14.704 19.186 Atomic orbital electron populations 1.21821 0.89832 1.03611 1.04347 1.20149 0.99663 1.00271 0.89229 0.87340 1.20642 0.79732 0.84142 0.85166 1.90641 1.39600 1.27859 1.87293 1.45895 1.52898 1.32040 1.04962 1.21453 0.98408 0.95902 0.83724 1.20112 0.97238 0.83661 0.90510 0.92078 1.42537 1.33936 1.01214 1.58342 1.19455 1.06835 0.87424 1.21171 0.90500 1.25307 0.99414 0.98954 1.02180 1.69809 1.29318 1.15745 1.46670 0.85313 0.78200 0.79926 0.77763 1.19153 1.22598 1.23106 1.23052 1.04297 0.98382 0.93334 1.22770 0.92620 1.01471 1.04231 1.22841 0.98574 1.02826 0.96240 1.19483 1.03699 0.94847 0.97885 1.17539 0.97993 0.79058 0.96341 1.91498 1.90859 1.34675 1.94927 1.21542 1.03060 0.96621 0.96813 1.21321 0.93674 0.92478 0.99197 1.21570 1.00857 1.02658 0.93394 1.17433 0.93102 0.89211 0.88708 1.91463 1.72025 1.80448 1.67617 0.89668 0.90605 0.91589 0.75310 0.93295 0.90395 0.79441 0.94438 0.86809 0.90455 0.89165 0.88000 0.90240 0.81425 0.79672 0.81773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 8.88 71.98 0.64 -2.66 16 2 C -0.07 -2.09 2.79 -12.29 -0.03 -2.12 16 3 H 0.11 3.23 7.13 -2.39 -0.02 3.21 16 4 C 0.52 17.93 6.60 87.66 0.58 18.51 16 5 O -0.57 -23.00 14.56 -3.05 -0.04 -23.04 16 6 N -0.71 -24.04 5.28 -463.05 -2.45 -26.48 16 7 C 0.13 4.42 5.21 86.38 0.45 4.87 16 8 C 0.19 7.00 2.86 44.99 0.13 7.13 16 9 H 0.06 2.20 8.08 -2.38 -0.02 2.18 16 10 N -0.72 -32.28 3.08 -322.95 -0.99 -33.28 16 11 C -0.22 -10.79 8.16 84.03 0.69 -10.11 16 12 H 0.08 3.72 6.91 -2.91 -0.02 3.70 16 13 C -0.07 -3.54 5.50 84.86 0.47 -3.07 16 14 N -0.96 -56.12 13.06 21.65 0.28 -55.84 16 15 Si 0.96 44.37 29.55 68.60 2.03 46.39 16 16 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 17 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 18 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 19 C -0.17 -5.63 5.71 -10.79 -0.06 -5.69 16 20 C -0.17 -6.39 9.74 30.62 0.30 -6.09 16 21 C -0.17 -5.67 9.87 30.62 0.30 -5.37 16 22 C -0.16 -4.30 4.41 -19.78 -0.09 -4.39 16 23 C 0.11 2.72 7.25 22.37 0.16 2.88 16 24 F -0.14 -3.89 16.19 44.97 0.73 -3.16 16 25 C -0.16 -2.73 10.03 22.32 0.22 -2.50 16 26 C -0.05 -0.64 10.04 22.25 0.22 -0.42 16 27 C -0.17 -2.94 10.02 22.32 0.22 -2.72 16 28 C 0.13 3.46 6.13 22.37 0.14 3.60 16 29 F -0.14 -3.99 13.81 44.97 0.62 -3.36 16 30 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.08 1.74 7.56 -2.39 -0.02 1.72 16 32 H 0.07 1.60 6.31 -2.39 -0.02 1.59 16 33 H 0.41 13.99 7.56 -92.71 -0.70 13.29 16 34 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 36 H 0.37 18.84 7.80 -92.71 -0.72 18.12 16 37 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 38 H 0.11 3.21 8.11 -2.39 -0.02 3.19 16 39 H 0.08 3.55 6.68 -2.39 -0.02 3.53 16 40 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 41 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 42 H 0.08 3.07 6.22 -2.39 -0.01 3.06 16 43 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 44 H 0.19 0.79 8.06 -2.91 -0.02 0.77 16 45 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -65.74 375.59 4.13 -61.61 By element: Atomic # 1 Polarization: 45.70 SS G_CDS: -0.38 Total: 45.32 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: 4.34 Total: -8.15 kcal Atomic # 7 Polarization: -112.45 SS G_CDS: -3.16 Total: -115.60 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -0.04 Total: -23.04 kcal Atomic # 9 Polarization: -7.88 SS G_CDS: 1.35 Total: -6.53 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -65.74 4.13 -61.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713872236.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.739 kcal (2) G-P(sol) polarization free energy of solvation -65.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds