Wall clock time and date at job start Tue Mar 31 2020 21:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.46899 * 2 1 4 4 C 1.50694 * 109.47550 * 119.99959 * 2 1 3 5 5 O 1.21288 * 119.99958 * 119.99769 * 4 2 1 6 6 N 1.34770 * 120.00287 * 300.00686 * 4 2 1 7 7 C 1.46501 * 120.00483 * 179.97438 * 6 4 2 8 8 C 1.52995 * 109.47566 * 179.97438 * 7 6 4 9 9 N 1.46495 * 109.47110 * 179.97438 * 8 7 6 10 10 C 1.36940 * 120.00171 * 270.00087 * 9 8 7 11 11 H 1.07998 * 120.00014 * 144.92907 * 10 9 8 12 12 C 1.38813 * 120.00258 * 324.92686 * 10 9 8 13 13 N 1.31620 * 119.99564 * 337.93837 * 12 10 9 14 14 Si 1.86791 * 120.00196 * 157.93461 * 12 10 9 15 15 H 1.48502 * 109.47034 * 90.00463 * 14 12 10 16 16 H 1.48498 * 109.47460 * 210.00228 * 14 12 10 17 17 H 1.48500 * 109.47263 * 330.00681 * 14 12 10 18 18 C 1.46504 * 120.00124 * 90.00240 * 9 8 7 19 19 C 1.52998 * 117.49996 * 183.23450 * 18 9 8 20 20 C 1.52999 * 117.49895 * 114.57182 * 18 9 8 21 21 C 1.50701 * 109.47034 * 240.00369 * 2 1 3 22 22 C 1.38225 * 119.98890 * 299.99470 * 21 2 1 23 23 C 1.38190 * 120.05082 * 179.97438 * 22 21 2 24 24 C 1.38489 * 120.02276 * 359.97438 * 23 22 21 25 25 F 1.35109 * 120.00834 * 179.97438 * 24 23 22 26 26 C 1.38390 * 119.98011 * 359.97438 * 24 23 22 27 27 C 1.38444 * 119.94802 * 359.77392 * 26 24 23 28 28 F 1.35103 * 120.01495 * 180.23287 * 27 26 24 29 29 H 1.08999 * 109.47800 * 59.99985 * 1 2 3 30 30 H 1.09007 * 109.47139 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47157 * 299.99662 * 1 2 3 32 32 H 0.97003 * 120.00192 * 359.97438 * 6 4 2 33 33 H 1.09005 * 109.47134 * 59.99006 * 7 6 4 34 34 H 1.08999 * 109.46885 * 300.00145 * 7 6 4 35 35 H 1.08999 * 109.47049 * 300.00155 * 8 7 6 36 36 H 1.09002 * 109.46565 * 60.00199 * 8 7 6 37 37 H 0.97003 * 119.99944 * 176.05965 * 13 12 10 38 38 H 1.09001 * 115.54930 * 328.90953 * 18 9 8 39 39 H 1.08998 * 117.50106 * 0.02562 * 19 18 9 40 40 H 1.08998 * 117.49511 * 145.02361 * 19 18 9 41 41 H 1.08998 * 117.50256 * 214.98035 * 20 18 9 42 42 H 1.08999 * 117.50180 * 359.97438 * 20 18 9 43 43 H 1.07998 * 119.97208 * 359.97438 * 22 21 2 44 44 H 1.08001 * 119.98662 * 179.97438 * 23 22 21 45 45 H 1.08003 * 120.02775 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7296 -1.6965 1.1191 6 7 1.7068 -0.2500 2.4545 7 6 2.1947 -0.9409 3.6507 8 6 1.6853 -0.2194 4.8999 9 7 2.1728 -0.9107 6.0960 10 6 1.4317 -1.9175 6.6548 11 1 1.9258 -2.7652 7.1062 12 6 0.0453 -1.8487 6.6412 13 7 -0.5544 -0.6848 6.5072 14 14 -0.9690 -3.4078 6.8128 15 1 -1.2438 -3.6639 8.2495 16 1 -2.2530 -3.2458 6.0846 17 1 -0.2167 -4.5533 6.2409 18 6 3.4532 -0.5249 6.6944 19 6 3.9436 -1.3342 7.8966 20 6 3.4215 0.0911 8.0945 21 6 2.0322 -0.7103 -1.2305 22 6 1.6983 -2.0337 -1.4491 23 6 2.1577 -2.6862 -2.5773 24 6 2.9531 -2.0144 -3.4906 25 9 3.4026 -2.6528 -4.5933 26 6 3.2872 -0.6892 -3.2734 27 6 2.8221 -0.0350 -2.1454 28 9 3.1436 1.2602 -1.9345 29 1 -0.3635 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.1493 0.5388 2.5436 33 1 3.2848 -0.9414 3.6507 34 1 1.8311 -1.9685 3.6504 35 1 2.0493 0.8080 4.8999 36 1 0.5953 -0.2188 4.9000 37 1 -1.5212 -0.6422 6.4402 38 1 4.2045 -0.1528 5.9978 39 1 3.3138 -2.1540 8.2421 40 1 5.0176 -1.4943 7.9911 41 1 4.1523 0.8680 8.3193 42 1 2.4481 0.2097 8.5703 43 1 1.0777 -2.5581 -0.7375 44 1 1.8965 -3.7203 -2.7468 45 1 3.9071 -0.1644 -3.9854 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714675824.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:39 Heat of formation + Delta-G solvation = -58.201972 kcal Electronic energy + Delta-G solvation = -28891.566638 eV Core-core repulsion = 24546.471421 eV Total energy + Delta-G solvation = -4345.095217 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -49.24157 -49.21075 -40.15955 -38.56006 -37.14254 -34.80904 -34.26568 -33.21544 -31.05615 -30.83277 -29.37627 -27.59564 -25.05381 -24.32913 -23.37464 -22.47228 -21.59378 -21.24939 -19.99071 -19.67235 -18.47353 -17.67720 -16.91009 -16.37900 -16.20799 -16.01598 -15.85497 -15.56997 -15.49813 -15.11438 -14.97758 -14.68739 -14.46160 -14.22111 -13.92598 -13.60219 -13.18460 -13.02937 -12.75960 -12.68965 -12.43919 -12.13916 -11.97862 -11.93705 -11.61328 -11.43472 -11.33932 -11.08858 -10.77677 -10.76316 -10.37567 -10.16858 -9.90733 -9.68599 -9.59599 -9.32570 -9.25767 -8.82142 -8.62693 -8.52701 -6.68834 -5.90407 -3.50120 0.70673 0.81901 2.84655 3.07176 3.28447 3.37022 3.41666 3.54174 3.63726 4.13580 4.25444 4.33905 4.39007 4.60326 4.80764 4.87976 4.94586 4.98765 5.07246 5.23312 5.27163 5.42470 5.56203 5.59115 5.65241 5.70431 5.82415 5.86285 5.94732 5.99679 6.05586 6.07781 6.16404 6.24630 6.46179 6.47800 6.53281 6.57893 6.79458 6.93294 7.02040 7.17425 7.47424 7.71640 7.83769 8.36075 8.48864 9.03615 9.66332 10.21269 11.06207 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014748 B = 0.002601 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.112527 B =10763.093657 C =11414.015102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.075 4.075 3 H 0.109 0.891 4 C 0.513 3.487 5 O -0.539 6.539 6 N -0.716 5.716 7 C 0.099 3.901 8 C 0.136 3.864 9 N -0.547 5.547 10 C -0.258 4.258 11 H 0.068 0.932 12 C 0.011 3.989 13 N -0.884 5.884 14 Si 0.896 3.104 15 H -0.285 1.285 16 H -0.288 1.288 17 H -0.277 1.277 18 C 0.119 3.881 19 C -0.195 4.195 20 C -0.220 4.220 21 C -0.104 4.104 22 C -0.027 4.027 23 C -0.162 4.162 24 C 0.126 3.874 25 F -0.134 7.134 26 C -0.195 4.195 27 C 0.134 3.866 28 F -0.130 7.130 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.398 0.602 33 H 0.050 0.950 34 H 0.066 0.934 35 H 0.031 0.969 36 H 0.106 0.894 37 H 0.255 0.745 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.092 0.908 43 H 0.143 0.857 44 H 0.143 0.857 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.584 3.193 -17.379 17.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.097 4.097 3 H 0.127 0.873 4 C 0.297 3.703 5 O -0.417 6.417 6 N -0.366 5.366 7 C -0.026 4.026 8 C 0.009 3.991 9 N -0.264 5.264 10 C -0.387 4.387 11 H 0.085 0.915 12 C -0.189 4.189 13 N -0.526 5.526 14 Si 0.725 3.275 15 H -0.212 1.212 16 H -0.214 1.214 17 H -0.202 1.202 18 C 0.010 3.990 19 C -0.233 4.233 20 C -0.261 4.261 21 C -0.105 4.105 22 C -0.045 4.045 23 C -0.181 4.181 24 C 0.106 3.894 25 F -0.113 7.113 26 C -0.214 4.214 27 C 0.115 3.885 28 F -0.108 7.108 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.232 0.768 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.050 0.950 36 H 0.124 0.876 37 H 0.065 0.935 38 H 0.105 0.895 39 H 0.116 0.884 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.110 0.890 43 H 0.161 0.839 44 H 0.160 0.840 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.917 2.541 -17.415 17.840 hybrid contribution -0.546 -0.229 0.063 0.595 sum 2.371 2.312 -17.352 17.665 Atomic orbital electron populations 1.21813 0.91317 1.03425 1.03306 1.20250 0.98254 1.00662 0.90524 0.87314 1.20238 0.80753 0.84823 0.84459 1.90711 1.38003 1.26289 1.86675 1.46058 1.52865 1.31836 1.05882 1.22339 0.98271 0.97913 0.84053 1.21103 1.03191 0.91963 0.82847 1.43229 1.18290 1.39688 1.25208 1.19083 0.87683 0.97026 1.34952 0.91468 1.25115 0.97391 0.96302 1.00070 1.70034 1.08866 1.22464 1.51245 0.86413 0.79613 0.83563 0.77927 1.21155 1.21394 1.20183 1.21236 0.90373 1.00245 0.87153 1.23041 0.98899 0.95790 1.05588 1.23359 1.01796 0.94590 1.06321 1.19455 1.00024 0.95269 0.95778 1.20726 0.96408 0.92349 0.94989 1.21194 1.00421 1.01585 0.94935 1.17287 0.97086 0.90291 0.84706 1.91524 1.87416 1.81583 1.50749 1.20907 1.06076 0.94634 0.99825 1.17064 0.97543 0.79019 0.94888 1.91509 1.90983 1.33694 1.94659 0.91266 0.91553 0.90886 0.76828 0.93174 0.91529 0.95033 0.87623 0.93501 0.89495 0.88416 0.90678 0.91166 0.88971 0.83928 0.83964 0.83525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.90 37.15 0.33 -0.95 16 2 C -0.08 -0.85 2.88 -92.93 -0.27 -1.12 16 3 H 0.11 1.11 7.12 -51.93 -0.37 0.74 16 4 C 0.51 7.80 7.02 -10.99 -0.08 7.73 16 5 O -0.54 -10.20 15.11 5.55 0.08 -10.12 16 6 N -0.72 -10.95 5.45 -60.30 -0.33 -11.27 16 7 C 0.10 1.90 6.00 -4.04 -0.02 1.87 16 8 C 0.14 2.87 5.45 -4.05 -0.02 2.85 16 9 N -0.55 -12.83 2.78 -165.67 -0.46 -13.29 16 10 C -0.26 -6.64 8.63 -15.06 -0.13 -6.77 16 11 H 0.07 1.75 6.55 -52.49 -0.34 1.41 16 12 C 0.01 0.30 4.96 -17.43 -0.09 0.21 16 13 N -0.88 -23.58 11.33 55.49 0.63 -22.95 16 14 Si 0.90 20.66 29.61 -169.99 -5.03 15.63 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 18 C 0.12 2.46 6.56 -67.93 -0.45 2.02 16 19 C -0.19 -3.77 9.80 -26.69 -0.26 -4.03 16 20 C -0.22 -4.35 10.36 -26.69 -0.28 -4.63 16 21 C -0.10 -1.22 4.40 -104.55 -0.46 -1.68 16 22 C -0.03 -0.30 7.92 -39.60 -0.31 -0.61 16 23 C -0.16 -1.66 10.03 -39.51 -0.40 -2.06 16 24 C 0.13 1.33 7.30 -39.43 -0.29 1.04 16 25 F -0.13 -1.44 17.27 2.25 0.04 -1.40 16 26 C -0.19 -2.01 10.01 -39.45 -0.39 -2.41 16 27 C 0.13 1.53 7.25 -39.42 -0.29 1.24 16 28 F -0.13 -1.49 16.19 2.25 0.04 -1.45 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.62 7.39 -51.92 -0.38 0.24 16 31 H 0.07 0.62 7.56 -51.93 -0.39 0.23 16 32 H 0.40 5.07 7.89 -40.82 -0.32 4.75 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.03 0.62 8.07 -51.93 -0.42 0.21 16 36 H 0.11 2.49 5.35 -51.93 -0.28 2.21 16 37 H 0.26 6.58 8.32 -40.82 -0.34 6.24 16 38 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 39 H 0.10 2.06 6.37 -51.93 -0.33 1.73 16 40 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.09 2.08 8.14 -51.93 -0.42 1.66 16 43 H 0.14 1.56 7.51 -52.49 -0.39 1.17 16 44 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 45 H 0.15 1.23 8.06 -52.48 -0.42 0.80 16 LS Contribution 381.78 15.07 5.75 5.75 Total: -1.00 -29.33 381.78 -8.86 -38.19 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -6.17 Total: 8.22 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -3.40 Total: -7.30 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: -0.16 Total: -47.51 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.08 Total: -10.12 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.08 Total: -2.85 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.33 -8.86 -38.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714675824.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.013 kcal (2) G-P(sol) polarization free energy of solvation -29.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds