Wall clock time and date at job start Tue Mar 31 2020 21:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.46899 * 2 1 4 4 C 1.50694 * 109.47550 * 119.99959 * 2 1 3 5 5 O 1.21288 * 119.99958 * 119.99769 * 4 2 1 6 6 N 1.34770 * 120.00287 * 300.00686 * 4 2 1 7 7 C 1.46501 * 120.00483 * 179.97438 * 6 4 2 8 8 C 1.52995 * 109.47566 * 179.97438 * 7 6 4 9 9 N 1.46495 * 109.47110 * 179.97438 * 8 7 6 10 10 C 1.36940 * 120.00171 * 270.00087 * 9 8 7 11 11 H 1.07998 * 120.00014 * 144.92907 * 10 9 8 12 12 C 1.38813 * 120.00258 * 324.92686 * 10 9 8 13 13 N 1.31620 * 119.99564 * 337.93837 * 12 10 9 14 14 Si 1.86791 * 120.00196 * 157.93461 * 12 10 9 15 15 H 1.48502 * 109.47034 * 90.00463 * 14 12 10 16 16 H 1.48498 * 109.47460 * 210.00228 * 14 12 10 17 17 H 1.48500 * 109.47263 * 330.00681 * 14 12 10 18 18 C 1.46504 * 120.00124 * 90.00240 * 9 8 7 19 19 C 1.52998 * 117.49996 * 183.23450 * 18 9 8 20 20 C 1.52999 * 117.49895 * 114.57182 * 18 9 8 21 21 C 1.50701 * 109.47034 * 240.00369 * 2 1 3 22 22 C 1.38225 * 119.98890 * 299.99470 * 21 2 1 23 23 C 1.38190 * 120.05082 * 179.97438 * 22 21 2 24 24 C 1.38489 * 120.02276 * 359.97438 * 23 22 21 25 25 F 1.35109 * 120.00834 * 179.97438 * 24 23 22 26 26 C 1.38390 * 119.98011 * 359.97438 * 24 23 22 27 27 C 1.38444 * 119.94802 * 359.77392 * 26 24 23 28 28 F 1.35103 * 120.01495 * 180.23287 * 27 26 24 29 29 H 1.08999 * 109.47800 * 59.99985 * 1 2 3 30 30 H 1.09007 * 109.47139 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47157 * 299.99662 * 1 2 3 32 32 H 0.97003 * 120.00192 * 359.97438 * 6 4 2 33 33 H 1.09005 * 109.47134 * 59.99006 * 7 6 4 34 34 H 1.08999 * 109.46885 * 300.00145 * 7 6 4 35 35 H 1.08999 * 109.47049 * 300.00155 * 8 7 6 36 36 H 1.09002 * 109.46565 * 60.00199 * 8 7 6 37 37 H 0.97003 * 119.99944 * 176.05965 * 13 12 10 38 38 H 1.09001 * 115.54930 * 328.90953 * 18 9 8 39 39 H 1.08998 * 117.50106 * 0.02562 * 19 18 9 40 40 H 1.08998 * 117.49511 * 145.02361 * 19 18 9 41 41 H 1.08998 * 117.50256 * 214.98035 * 20 18 9 42 42 H 1.08999 * 117.50180 * 359.97438 * 20 18 9 43 43 H 1.07998 * 119.97208 * 359.97438 * 22 21 2 44 44 H 1.08001 * 119.98662 * 179.97438 * 23 22 21 45 45 H 1.08003 * 120.02775 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7296 -1.6965 1.1191 6 7 1.7068 -0.2500 2.4545 7 6 2.1947 -0.9409 3.6507 8 6 1.6853 -0.2194 4.8999 9 7 2.1728 -0.9107 6.0960 10 6 1.4317 -1.9175 6.6548 11 1 1.9258 -2.7652 7.1062 12 6 0.0453 -1.8487 6.6412 13 7 -0.5544 -0.6848 6.5072 14 14 -0.9690 -3.4078 6.8128 15 1 -1.2438 -3.6639 8.2495 16 1 -2.2530 -3.2458 6.0846 17 1 -0.2167 -4.5533 6.2409 18 6 3.4532 -0.5249 6.6944 19 6 3.9436 -1.3342 7.8966 20 6 3.4215 0.0911 8.0945 21 6 2.0322 -0.7103 -1.2305 22 6 1.6983 -2.0337 -1.4491 23 6 2.1577 -2.6862 -2.5773 24 6 2.9531 -2.0144 -3.4906 25 9 3.4026 -2.6528 -4.5933 26 6 3.2872 -0.6892 -3.2734 27 6 2.8221 -0.0350 -2.1454 28 9 3.1436 1.2602 -1.9345 29 1 -0.3635 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.1493 0.5388 2.5436 33 1 3.2848 -0.9414 3.6507 34 1 1.8311 -1.9685 3.6504 35 1 2.0493 0.8080 4.8999 36 1 0.5953 -0.2188 4.9000 37 1 -1.5212 -0.6422 6.4402 38 1 4.2045 -0.1528 5.9978 39 1 3.3138 -2.1540 8.2421 40 1 5.0176 -1.4943 7.9911 41 1 4.1523 0.8680 8.3193 42 1 2.4481 0.2097 8.5703 43 1 1.0777 -2.5581 -0.7375 44 1 1.8965 -3.7203 -2.7468 45 1 3.9071 -0.1644 -3.9854 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714675824.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:38 Heat of formation + Delta-G solvation = -73.091884 kcal Electronic energy + Delta-G solvation = -28892.212313 eV Core-core repulsion = 24546.471421 eV Total energy + Delta-G solvation = -4345.740892 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -50.10003 -50.03941 -41.26641 -39.59359 -38.80216 -36.29947 -35.27920 -34.86654 -32.63215 -31.84426 -30.35163 -29.12559 -26.47212 -25.62655 -24.26172 -23.71564 -23.02853 -22.71597 -21.58097 -21.00893 -19.31881 -18.69562 -18.20966 -17.73888 -17.39644 -17.21936 -16.99098 -16.73048 -16.52908 -16.38051 -16.32817 -15.94293 -15.63531 -15.49363 -15.08556 -14.83866 -14.48099 -14.43869 -13.84738 -13.78930 -13.74945 -13.35766 -13.26345 -13.00227 -12.91835 -12.77663 -12.60512 -12.51308 -12.27562 -12.18817 -12.11358 -11.90445 -11.66021 -11.38334 -10.97542 -10.79830 -10.49218 -10.08789 -10.01097 -9.68178 -8.56770 -7.83903 -5.47277 -0.14410 -0.00589 1.43011 1.47635 1.56234 1.62946 2.07990 2.41383 2.52645 2.79835 3.13708 3.26568 3.39536 3.40638 3.48874 3.58908 3.79556 3.93122 4.07220 4.12655 4.26597 4.29276 4.38476 4.41096 4.51753 4.60676 4.66983 4.75936 4.82046 4.84606 4.85389 4.90063 4.93877 5.01930 5.03848 5.19932 5.24556 5.26299 5.32517 5.47964 5.54154 5.67547 5.71109 5.77389 6.42712 6.60884 7.12076 7.26685 7.80885 8.30407 9.08412 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014748 B = 0.002601 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.112527 B =10763.093657 C =11414.015102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.065 4.065 3 H 0.124 0.876 4 C 0.512 3.488 5 O -0.578 6.578 6 N -0.709 5.709 7 C 0.122 3.878 8 C 0.143 3.857 9 N -0.566 5.566 10 C -0.264 4.264 11 H 0.057 0.943 12 C -0.029 4.029 13 N -0.906 5.906 14 Si 0.947 3.053 15 H -0.286 1.286 16 H -0.286 1.286 17 H -0.278 1.278 18 C 0.099 3.901 19 C -0.185 4.185 20 C -0.212 4.212 21 C -0.115 4.115 22 C -0.037 4.037 23 C -0.160 4.160 24 C 0.120 3.880 25 F -0.135 7.135 26 C -0.191 4.191 27 C 0.125 3.875 28 F -0.132 7.132 29 H 0.089 0.911 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.412 0.588 33 H 0.044 0.956 34 H 0.034 0.966 35 H 0.044 0.956 36 H 0.084 0.916 37 H 0.254 0.746 38 H 0.110 0.890 39 H 0.075 0.925 40 H 0.109 0.891 41 H 0.102 0.898 42 H 0.058 0.942 43 H 0.141 0.859 44 H 0.160 0.840 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.152 3.810 -18.478 19.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.086 4.086 3 H 0.142 0.858 4 C 0.299 3.701 5 O -0.458 6.458 6 N -0.361 5.361 7 C -0.004 4.004 8 C 0.017 3.983 9 N -0.283 5.283 10 C -0.394 4.394 11 H 0.075 0.925 12 C -0.227 4.227 13 N -0.550 5.550 14 Si 0.776 3.224 15 H -0.213 1.213 16 H -0.212 1.212 17 H -0.204 1.204 18 C -0.009 4.009 19 C -0.223 4.223 20 C -0.252 4.252 21 C -0.117 4.117 22 C -0.055 4.055 23 C -0.178 4.178 24 C 0.100 3.900 25 F -0.113 7.113 26 C -0.211 4.211 27 C 0.106 3.894 28 F -0.110 7.110 29 H 0.108 0.892 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.249 0.751 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.102 0.898 37 H 0.063 0.937 38 H 0.128 0.872 39 H 0.093 0.907 40 H 0.127 0.873 41 H 0.121 0.879 42 H 0.076 0.924 43 H 0.159 0.841 44 H 0.178 0.822 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 3.481 3.184 -18.521 19.112 hybrid contribution -0.651 -0.423 0.396 0.871 sum 2.831 2.762 -18.125 18.552 Atomic orbital electron populations 1.21846 0.89483 1.03597 1.04697 1.20222 0.99620 1.00606 0.88132 0.85782 1.20925 0.79713 0.84283 0.85172 1.90691 1.39722 1.28124 1.87252 1.45894 1.53025 1.32080 1.05063 1.21781 0.97529 0.96187 0.84899 1.20976 1.01806 0.92591 0.82977 1.43434 1.19042 1.39660 1.26181 1.19180 0.88173 0.97488 1.34543 0.92507 1.25645 0.98133 0.98296 1.00601 1.70119 1.08800 1.23568 1.52488 0.85615 0.78372 0.80923 0.77536 1.21278 1.21166 1.20362 1.21531 0.89849 1.01516 0.88022 1.23051 1.00413 0.94720 1.04136 1.23264 1.01018 0.95926 1.05025 1.19570 1.00475 0.95622 0.96015 1.20791 0.96883 0.92442 0.95428 1.21395 0.99712 1.02415 0.94327 1.17369 0.97292 0.90510 0.84787 1.91524 1.87443 1.81611 1.50770 1.21102 1.05643 0.94585 0.99728 1.17122 0.97869 0.79096 0.95321 1.91503 1.91042 1.33741 1.94714 0.89175 0.92035 0.90200 0.75147 0.93794 0.94749 0.93736 0.89821 0.93700 0.87239 0.90695 0.87286 0.87925 0.92372 0.84146 0.82194 0.81680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 8.90 71.98 0.64 -1.64 16 2 C -0.06 -1.37 2.88 -12.29 -0.04 -1.41 16 3 H 0.12 2.27 7.12 -2.39 -0.02 2.25 16 4 C 0.51 15.30 7.02 87.66 0.62 15.92 16 5 O -0.58 -21.93 15.11 -3.05 -0.05 -21.98 16 6 N -0.71 -21.32 5.45 -463.07 -2.52 -23.85 16 7 C 0.12 4.71 6.00 86.38 0.52 5.23 16 8 C 0.14 6.06 5.45 86.38 0.47 6.53 16 9 N -0.57 -26.64 2.78 -678.05 -1.88 -28.52 16 10 C -0.26 -13.79 8.63 84.03 0.73 -13.06 16 11 H 0.06 3.03 6.55 -2.91 -0.02 3.01 16 12 C -0.03 -1.51 4.96 84.86 0.42 -1.09 16 13 N -0.91 -49.01 11.33 21.65 0.25 -48.76 16 14 Si 0.95 43.05 29.61 68.60 2.03 45.08 16 15 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 16 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 17 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 18 C 0.10 3.99 6.56 44.99 0.30 4.29 16 19 C -0.19 -6.92 9.80 30.62 0.30 -6.62 16 20 C -0.21 -8.12 10.36 30.62 0.32 -7.80 16 21 C -0.12 -2.57 4.40 -19.81 -0.09 -2.66 16 22 C -0.04 -0.81 7.92 22.26 0.18 -0.63 16 23 C -0.16 -3.07 10.03 22.32 0.22 -2.85 16 24 C 0.12 2.36 7.30 22.37 0.16 2.52 16 25 F -0.13 -2.69 17.27 44.97 0.78 -1.91 16 26 C -0.19 -3.63 10.01 22.36 0.22 -3.40 16 27 C 0.13 2.66 7.25 22.37 0.16 2.82 16 28 F -0.13 -2.79 16.19 44.97 0.73 -2.06 16 29 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.06 1.08 7.39 -2.38 -0.02 1.06 16 31 H 0.08 1.20 7.56 -2.39 -0.02 1.18 16 32 H 0.41 10.06 7.89 -92.71 -0.73 9.33 16 33 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 34 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.04 1.74 8.07 -2.39 -0.02 1.72 16 36 H 0.08 3.99 5.35 -2.39 -0.01 3.98 16 37 H 0.25 13.24 8.32 -92.71 -0.77 12.47 16 38 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 39 H 0.07 3.15 6.37 -2.39 -0.02 3.14 16 40 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 41 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 42 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 43 H 0.14 3.05 7.51 -2.91 -0.02 3.03 16 44 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 45 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -63.49 381.78 4.75 -58.74 By element: Atomic # 1 Polarization: 26.81 SS G_CDS: 0.29 Total: 27.11 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: 5.13 Total: -3.84 kcal Atomic # 7 Polarization: -96.97 SS G_CDS: -4.16 Total: -101.13 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.05 Total: -21.98 kcal Atomic # 9 Polarization: -5.48 SS G_CDS: 1.50 Total: -3.97 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -63.49 4.75 -58.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714675824.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.352 kcal (2) G-P(sol) polarization free energy of solvation -63.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds