Wall clock time and date at job start Tue Mar 31 2020 21:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46560 * 2 1 4 4 N 1.46897 * 109.46934 * 239.99605 * 2 1 3 5 5 C 1.46904 * 110.99836 * 85.00020 * 4 2 1 6 6 C 1.52998 * 109.47230 * 179.97438 * 5 4 2 7 7 C 1.52992 * 109.47299 * 180.02562 * 6 5 4 8 8 N 1.46504 * 109.47263 * 179.97438 * 7 6 5 9 9 C 1.46498 * 119.99943 * 269.99694 * 8 7 6 10 10 C 1.34778 * 119.99760 * 90.00016 * 8 7 6 11 11 O 1.21281 * 120.00357 * 359.97438 * 10 8 7 12 12 C 1.50708 * 119.99683 * 180.02562 * 10 8 7 13 13 S 1.80999 * 109.46897 * 179.97438 * 12 10 8 14 14 C 1.76198 * 99.99770 * 180.02562 * 13 12 10 15 15 H 1.08000 * 120.00262 * 359.97438 * 14 13 12 16 16 C 1.38802 * 119.99865 * 180.02562 * 14 13 12 17 17 N 1.31632 * 119.99981 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99824 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47312 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.46992 * 119.99718 * 18 16 14 21 21 H 1.48499 * 109.47248 * 239.99644 * 18 16 14 22 22 C 1.50696 * 109.47144 * 119.99327 * 2 1 3 23 23 C 1.38387 * 120.00645 * 274.98213 * 22 2 1 24 24 N 1.32127 * 119.99994 * 179.76858 * 23 22 2 25 25 C 1.32149 * 119.99872 * 0.50887 * 24 23 22 26 26 C 1.38346 * 120.00371 * 359.48627 * 25 24 23 27 27 N 1.32127 * 120.00024 * 94.99913 * 22 2 1 28 28 H 1.08998 * 109.47113 * 300.00259 * 1 2 3 29 29 H 1.09002 * 109.47222 * 60.00027 * 1 2 3 30 30 H 1.09001 * 109.47176 * 180.02562 * 1 2 3 31 31 H 1.00900 * 110.99642 * 208.94596 * 4 2 1 32 32 H 1.09000 * 109.47252 * 299.99687 * 5 4 2 33 33 H 1.09004 * 109.47026 * 59.99972 * 5 4 2 34 34 H 1.09000 * 109.46881 * 300.00077 * 6 5 4 35 35 H 1.08997 * 109.47182 * 59.99484 * 6 5 4 36 36 H 1.09000 * 109.47145 * 299.99828 * 7 6 5 37 37 H 1.09004 * 109.47579 * 59.99965 * 7 6 5 38 38 H 1.09002 * 109.46907 * 89.99989 * 9 8 7 39 39 H 1.08995 * 109.47413 * 209.99484 * 9 8 7 40 40 H 1.08993 * 109.47377 * 330.00524 * 9 8 7 41 41 H 1.08999 * 109.46934 * 299.99793 * 12 10 8 42 42 H 1.09004 * 109.46746 * 59.99460 * 12 10 8 43 43 H 0.97001 * 119.99901 * 180.02562 * 17 16 14 44 44 H 1.07999 * 119.99913 * 0.02562 * 23 22 2 45 45 H 1.08002 * 120.00163 * 179.77166 * 25 24 23 46 46 H 1.07999 * 120.00349 * 180.27731 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.0824 0.2225 -2.3469 6 6 2.5961 -0.5330 -3.5742 7 6 2.6621 0.4201 -4.7691 8 7 3.1546 -0.3031 -5.9441 9 6 4.5921 -0.3579 -6.2211 10 6 2.2851 -0.9180 -6.7702 11 8 1.0951 -0.8730 -6.5406 12 6 2.7918 -1.6625 -7.9786 13 16 1.3923 -2.3735 -8.8797 14 6 2.2489 -3.1626 -10.2019 15 1 3.3259 -3.1049 -10.2583 16 6 1.5395 -3.8575 -11.1717 17 7 0.2268 -3.9274 -11.1033 18 14 2.4476 -4.6934 -12.5738 19 1 3.9075 -4.4668 -12.4230 20 1 2.1671 -6.1514 -12.5457 21 1 1.9902 -4.1262 -13.8677 22 6 2.0324 -0.7102 1.2305 23 6 2.1649 -0.0198 2.4225 24 7 2.6010 -0.6437 3.5024 25 6 2.9202 -1.9247 3.4418 26 6 2.7876 -2.6151 2.2503 27 7 2.3466 -1.9922 1.1713 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 2.9173 -1.1204 -1.0286 32 1 1.0870 0.6162 -2.5526 33 1 2.7588 1.0461 -2.1183 34 1 3.5916 -0.9263 -3.3682 35 1 1.9202 -1.3569 -3.8029 36 1 1.6668 0.8139 -4.9752 37 1 3.3384 1.2438 -4.5401 38 1 5.0238 -1.2300 -5.7299 39 1 4.7524 -0.4305 -7.2968 40 1 5.0698 0.5457 -5.8427 41 1 3.3316 -0.9745 -8.6292 42 1 3.4613 -2.4612 -7.6589 43 1 -0.2689 -4.4134 -11.7807 44 1 1.9080 1.0281 2.4710 45 1 3.2801 -2.4338 4.3236 46 1 3.0441 -3.6630 2.2019 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716529540.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:18 Heat of formation + Delta-G solvation = 15.071133 kcal Electronic energy + Delta-G solvation = -25435.239321 eV Core-core repulsion = 21679.454602 eV Total energy + Delta-G solvation = -3755.784719 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.59176 -39.46318 -37.65827 -35.63999 -34.55627 -33.51611 -32.40897 -31.38461 -29.85552 -28.62096 -26.78054 -25.59955 -25.41422 -25.07405 -24.02530 -21.66706 -21.30489 -19.13380 -17.99568 -17.64705 -17.53440 -16.88802 -16.60431 -16.01024 -15.72406 -15.46005 -15.24140 -14.79443 -14.75967 -14.61749 -14.01492 -13.83771 -13.52899 -13.29272 -13.03091 -12.80759 -12.59493 -12.55856 -12.43486 -12.20628 -12.02795 -11.97716 -11.65622 -11.64173 -11.49627 -11.48437 -11.05814 -10.99619 -10.77559 -10.70164 -9.77538 -9.73879 -9.50448 -9.31620 -9.05525 -8.68637 -8.50639 -8.19217 -6.47438 -6.19780 -3.89954 0.27533 0.68809 2.96068 3.10142 3.21782 3.22718 3.27579 3.32372 3.49594 3.57052 3.69419 3.82755 4.15387 4.22103 4.26484 4.66462 4.76125 4.79848 4.83687 4.92610 4.96564 4.98189 5.09192 5.15123 5.16604 5.19595 5.29918 5.38638 5.43414 5.51154 5.54973 5.59415 5.69197 5.72690 5.85615 5.93803 5.96322 6.09111 6.16199 6.21973 6.64622 6.71834 6.87600 7.10210 7.34962 7.56676 7.61874 8.37296 8.60522 9.25569 10.87702 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020485 B = 0.001695 C = 0.001666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.495035 B =16514.190858 C =16806.740804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.139 3.861 3 H 0.064 0.936 4 N -0.670 5.670 5 C 0.062 3.938 6 C -0.132 4.132 7 C 0.121 3.879 8 N -0.625 5.625 9 C 0.082 3.918 10 C 0.532 3.468 11 O -0.513 6.513 12 C -0.150 4.150 13 S -0.062 6.062 14 C -0.534 4.534 15 H 0.073 0.927 16 C 0.073 3.927 17 N -0.867 5.867 18 Si 0.918 3.082 19 H -0.272 1.272 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.078 3.922 23 C 0.053 3.947 24 N -0.437 5.437 25 C 0.041 3.959 26 C 0.055 3.945 27 N -0.416 5.416 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.347 0.653 32 H 0.077 0.923 33 H 0.028 0.972 34 H 0.059 0.941 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.053 0.947 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.168 0.832 45 H 0.170 0.830 46 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.176 9.822 27.311 30.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.028 3.972 3 H 0.082 0.918 4 N -0.303 5.303 5 C -0.068 4.068 6 C -0.171 4.171 7 C -0.003 4.003 8 N -0.361 5.361 9 C -0.062 4.062 10 C 0.320 3.680 11 O -0.387 6.387 12 C -0.301 4.301 13 S 0.165 5.835 14 C -0.683 4.683 15 H 0.091 0.909 16 C -0.136 4.136 17 N -0.503 5.503 18 Si 0.745 3.255 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.063 4.063 23 C -0.107 4.107 24 N -0.151 5.151 25 C -0.119 4.119 26 C -0.105 4.105 27 N -0.131 5.131 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.167 0.833 32 H 0.096 0.904 33 H 0.046 0.954 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.077 0.923 44 H 0.185 0.815 45 H 0.187 0.813 46 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 6.633 9.574 27.399 29.772 hybrid contribution 2.908 -0.211 -0.806 3.025 sum 9.540 9.363 26.593 29.764 Atomic orbital electron populations 1.21805 0.92467 1.03344 1.01944 1.20392 0.96780 0.94466 0.85548 0.91807 1.60356 1.34406 1.32525 1.03025 1.21979 1.01057 0.93414 0.90309 1.21908 1.01756 0.99959 0.93515 1.21314 1.01089 0.93525 0.84367 1.47850 1.07064 1.55003 1.26219 1.21755 0.80531 1.01566 1.02356 1.20338 0.86065 0.78214 0.83355 1.90696 1.15677 1.59072 1.73276 1.23561 1.06540 1.02153 0.97819 1.85403 1.05268 1.65759 1.27091 1.22905 0.95302 1.38595 1.11459 0.90916 1.24994 0.94973 0.95812 0.97831 1.70032 1.05702 1.40021 1.34497 0.86122 0.79506 0.78989 0.80900 1.19634 1.20571 1.20585 1.22407 0.95911 0.91448 0.96535 1.23557 0.96649 1.01637 0.88888 1.68472 1.07393 1.09689 1.29565 1.23818 0.97344 0.91272 0.99426 1.23903 0.95495 1.01863 0.89250 1.68318 1.06588 1.08330 1.29897 0.92449 0.91229 0.91391 0.83294 0.90411 0.95409 0.92215 0.90055 0.89762 0.91204 0.92880 0.90666 0.91542 0.89329 0.89316 0.92256 0.81491 0.81303 0.81106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.40 37.16 0.35 -0.71 16 2 C 0.14 1.07 2.88 -68.87 -0.20 0.87 16 3 H 0.06 0.38 7.78 -51.93 -0.40 -0.02 16 4 N -0.67 -6.35 6.06 -107.95 -0.65 -7.00 16 5 C 0.06 0.55 5.48 -3.82 -0.02 0.53 16 6 C -0.13 -1.46 5.80 -26.74 -0.16 -1.62 16 7 C 0.12 1.41 5.45 -4.04 -0.02 1.39 16 8 N -0.63 -8.82 2.87 -181.57 -0.52 -9.34 16 9 C 0.08 0.85 10.29 59.85 0.62 1.46 16 10 C 0.53 10.26 7.69 -10.98 -0.08 10.17 16 11 O -0.51 -11.83 15.44 5.56 0.09 -11.75 16 12 C -0.15 -3.10 4.71 36.01 0.17 -2.93 16 13 S -0.06 -1.70 20.57 -107.50 -2.21 -3.92 16 14 C -0.53 -15.34 9.50 30.94 0.29 -15.05 16 15 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 16 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 17 N -0.87 -26.33 13.22 55.49 0.73 -25.60 16 18 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 19 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 C 0.08 0.64 5.70 -82.41 -0.47 0.17 16 23 C 0.05 0.39 10.90 -17.37 -0.19 0.20 16 24 N -0.44 -3.57 10.50 -13.06 -0.14 -3.71 16 25 C 0.04 0.26 11.22 -17.38 -0.20 0.06 16 26 C 0.05 0.37 11.22 -17.37 -0.20 0.18 16 27 N -0.42 -3.85 9.46 -9.29 -0.09 -3.94 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.54 7.45 -51.93 -0.39 0.15 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.35 3.36 7.86 -39.29 -0.31 3.05 16 32 H 0.08 0.73 7.44 -51.93 -0.39 0.34 16 33 H 0.03 0.21 8.06 -51.93 -0.42 -0.21 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.08 1.13 7.42 -51.93 -0.39 0.74 16 37 H 0.07 0.61 7.89 -51.93 -0.41 0.20 16 38 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.80 6.44 -51.93 -0.33 0.47 16 40 H 0.07 0.51 7.89 -51.93 -0.41 0.10 16 41 H 0.09 1.68 7.40 -51.92 -0.38 1.30 16 42 H 0.09 1.71 8.11 -51.91 -0.42 1.29 16 43 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.17 0.77 8.06 -52.49 -0.42 0.35 16 45 H 0.17 0.53 8.06 -52.49 -0.42 0.10 16 46 H 0.17 0.68 8.06 -52.49 -0.42 0.26 16 LS Contribution 399.48 15.07 6.02 6.02 Total: -1.00 -36.61 399.48 -9.17 -45.78 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -7.18 Total: 0.22 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -0.20 Total: -3.27 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: -0.67 Total: -49.59 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.09 Total: -11.75 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.61 -9.17 -45.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716529540.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.848 kcal (2) G-P(sol) polarization free energy of solvation -36.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds