Wall clock time and date at job start Tue Mar 31 2020 21:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46560 * 2 1 4 4 N 1.46897 * 109.46934 * 239.99605 * 2 1 3 5 5 C 1.46904 * 110.99836 * 85.00020 * 4 2 1 6 6 C 1.52998 * 109.47230 * 179.97438 * 5 4 2 7 7 C 1.52992 * 109.47299 * 180.02562 * 6 5 4 8 8 N 1.46504 * 109.47263 * 179.97438 * 7 6 5 9 9 C 1.46498 * 119.99943 * 269.99694 * 8 7 6 10 10 C 1.34778 * 119.99760 * 90.00016 * 8 7 6 11 11 O 1.21281 * 120.00357 * 359.97438 * 10 8 7 12 12 C 1.50708 * 119.99683 * 180.02562 * 10 8 7 13 13 S 1.80999 * 109.46897 * 179.97438 * 12 10 8 14 14 C 1.76198 * 99.99770 * 180.02562 * 13 12 10 15 15 H 1.08000 * 120.00262 * 359.97438 * 14 13 12 16 16 C 1.38802 * 119.99865 * 180.02562 * 14 13 12 17 17 N 1.31632 * 119.99981 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99824 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47312 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.46992 * 119.99718 * 18 16 14 21 21 H 1.48499 * 109.47248 * 239.99644 * 18 16 14 22 22 C 1.50696 * 109.47144 * 119.99327 * 2 1 3 23 23 C 1.38387 * 120.00645 * 274.98213 * 22 2 1 24 24 N 1.32127 * 119.99994 * 179.76858 * 23 22 2 25 25 C 1.32149 * 119.99872 * 0.50887 * 24 23 22 26 26 C 1.38346 * 120.00371 * 359.48627 * 25 24 23 27 27 N 1.32127 * 120.00024 * 94.99913 * 22 2 1 28 28 H 1.08998 * 109.47113 * 300.00259 * 1 2 3 29 29 H 1.09002 * 109.47222 * 60.00027 * 1 2 3 30 30 H 1.09001 * 109.47176 * 180.02562 * 1 2 3 31 31 H 1.00900 * 110.99642 * 208.94596 * 4 2 1 32 32 H 1.09000 * 109.47252 * 299.99687 * 5 4 2 33 33 H 1.09004 * 109.47026 * 59.99972 * 5 4 2 34 34 H 1.09000 * 109.46881 * 300.00077 * 6 5 4 35 35 H 1.08997 * 109.47182 * 59.99484 * 6 5 4 36 36 H 1.09000 * 109.47145 * 299.99828 * 7 6 5 37 37 H 1.09004 * 109.47579 * 59.99965 * 7 6 5 38 38 H 1.09002 * 109.46907 * 89.99989 * 9 8 7 39 39 H 1.08995 * 109.47413 * 209.99484 * 9 8 7 40 40 H 1.08993 * 109.47377 * 330.00524 * 9 8 7 41 41 H 1.08999 * 109.46934 * 299.99793 * 12 10 8 42 42 H 1.09004 * 109.46746 * 59.99460 * 12 10 8 43 43 H 0.97001 * 119.99901 * 180.02562 * 17 16 14 44 44 H 1.07999 * 119.99913 * 0.02562 * 23 22 2 45 45 H 1.08002 * 120.00163 * 179.77166 * 25 24 23 46 46 H 1.07999 * 120.00349 * 180.27731 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.0824 0.2225 -2.3469 6 6 2.5961 -0.5330 -3.5742 7 6 2.6621 0.4201 -4.7691 8 7 3.1546 -0.3031 -5.9441 9 6 4.5921 -0.3579 -6.2211 10 6 2.2851 -0.9180 -6.7702 11 8 1.0951 -0.8730 -6.5406 12 6 2.7918 -1.6625 -7.9786 13 16 1.3923 -2.3735 -8.8797 14 6 2.2489 -3.1626 -10.2019 15 1 3.3259 -3.1049 -10.2583 16 6 1.5395 -3.8575 -11.1717 17 7 0.2268 -3.9274 -11.1033 18 14 2.4476 -4.6934 -12.5738 19 1 3.9075 -4.4668 -12.4230 20 1 2.1671 -6.1514 -12.5457 21 1 1.9902 -4.1262 -13.8677 22 6 2.0324 -0.7102 1.2305 23 6 2.1649 -0.0198 2.4225 24 7 2.6010 -0.6437 3.5024 25 6 2.9202 -1.9247 3.4418 26 6 2.7876 -2.6151 2.2503 27 7 2.3466 -1.9922 1.1713 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 2.9173 -1.1204 -1.0286 32 1 1.0870 0.6162 -2.5526 33 1 2.7588 1.0461 -2.1183 34 1 3.5916 -0.9263 -3.3682 35 1 1.9202 -1.3569 -3.8029 36 1 1.6668 0.8139 -4.9752 37 1 3.3384 1.2438 -4.5401 38 1 5.0238 -1.2300 -5.7299 39 1 4.7524 -0.4305 -7.2968 40 1 5.0698 0.5457 -5.8427 41 1 3.3316 -0.9745 -8.6292 42 1 3.4613 -2.4612 -7.6589 43 1 -0.2689 -4.4134 -11.7807 44 1 1.9080 1.0281 2.4710 45 1 3.2801 -2.4338 4.3236 46 1 3.0441 -3.6630 2.2019 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716529540.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:17 Heat of formation + Delta-G solvation = -11.777428 kcal Electronic energy + Delta-G solvation = -25436.403562 eV Core-core repulsion = 21679.454602 eV Total energy + Delta-G solvation = -3756.948960 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.11132 -40.83525 -38.37384 -36.83156 -35.18666 -34.58623 -34.28690 -32.21310 -30.82728 -29.74646 -27.70676 -27.68558 -26.18178 -25.70453 -24.84314 -22.54259 -21.91503 -20.58848 -19.52033 -18.55071 -18.06164 -18.03254 -17.50333 -17.07036 -16.88045 -16.69794 -16.50996 -15.92472 -15.84836 -15.48573 -15.26788 -14.78675 -14.48952 -14.44527 -14.25065 -13.99053 -13.59658 -13.52956 -13.26667 -13.18101 -13.15575 -12.98526 -12.91094 -12.62104 -12.60629 -12.52600 -12.38303 -12.19496 -12.13298 -11.72186 -11.60458 -11.15890 -10.86669 -10.26134 -10.23668 -10.03372 -9.67678 -9.33580 -8.67466 -8.34699 -6.13142 -0.21721 0.15361 1.26609 1.41483 1.46593 1.57559 1.60228 2.15291 2.27635 2.70761 2.97596 2.99378 3.02950 3.27615 3.37394 3.64061 3.73261 3.76268 4.03715 4.10242 4.19917 4.20991 4.28155 4.32287 4.38821 4.40874 4.43677 4.48579 4.52638 4.57084 4.61800 4.71094 4.74545 4.85958 4.91723 4.94734 5.17497 5.26061 5.30916 5.41735 5.41853 5.63558 6.03373 6.19852 6.29548 6.35122 6.41698 6.83527 7.06386 7.17664 8.74892 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020485 B = 0.001695 C = 0.001666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.495035 B =16514.190858 C =16806.740804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.141 3.859 3 H 0.087 0.913 4 N -0.688 5.688 5 C 0.070 3.930 6 C -0.121 4.121 7 C 0.118 3.882 8 N -0.612 5.612 9 C 0.071 3.929 10 C 0.528 3.472 11 O -0.564 6.564 12 C -0.124 4.124 13 S -0.155 6.155 14 C -0.545 4.545 15 H 0.083 0.917 16 C 0.012 3.988 17 N -0.912 5.912 18 Si 1.000 3.000 19 H -0.256 1.256 20 H -0.274 1.274 21 H -0.273 1.273 22 C 0.067 3.933 23 C 0.051 3.949 24 N -0.460 5.460 25 C 0.044 3.956 26 C 0.048 3.952 27 N -0.449 5.449 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.041 0.959 31 H 0.346 0.654 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.035 0.965 36 H 0.062 0.938 37 H 0.115 0.885 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.104 0.896 41 H 0.108 0.892 42 H 0.104 0.896 43 H 0.271 0.729 44 H 0.191 0.809 45 H 0.199 0.801 46 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.360 10.805 28.314 32.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.031 3.969 3 H 0.105 0.895 4 N -0.321 5.321 5 C -0.060 4.060 6 C -0.160 4.160 7 C -0.004 4.004 8 N -0.346 5.346 9 C -0.070 4.070 10 C 0.315 3.685 11 O -0.443 6.443 12 C -0.275 4.275 13 S 0.072 5.928 14 C -0.693 4.693 15 H 0.101 0.899 16 C -0.192 4.192 17 N -0.548 5.548 18 Si 0.822 3.178 19 H -0.179 1.179 20 H -0.200 1.200 21 H -0.199 1.199 22 C -0.074 4.074 23 C -0.108 4.108 24 N -0.174 5.174 25 C -0.116 4.116 26 C -0.112 4.112 27 N -0.164 5.164 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.060 0.940 31 H 0.165 0.835 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.054 0.946 36 H 0.080 0.920 37 H 0.133 0.867 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.123 0.877 41 H 0.127 0.873 42 H 0.122 0.878 43 H 0.080 0.920 44 H 0.208 0.792 45 H 0.216 0.784 46 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 9.866 10.591 28.435 31.907 hybrid contribution 1.988 -0.479 -0.962 2.260 sum 11.854 10.112 27.473 31.583 Atomic orbital electron populations 1.21778 0.92960 1.01801 1.02701 1.20432 0.96317 0.95405 0.84784 0.89501 1.60300 1.34477 1.33432 1.03924 1.21874 1.01168 0.93659 0.89281 1.21758 1.01312 0.98644 0.94290 1.21537 1.01153 0.94432 0.83307 1.47874 1.08152 1.53007 1.25519 1.22096 0.77962 1.04197 1.02790 1.20156 0.85965 0.78627 0.83708 1.90678 1.17856 1.61247 1.74502 1.23382 1.03317 1.02737 0.98025 1.85601 1.11041 1.67102 1.29059 1.23231 0.95723 1.38733 1.11599 0.89900 1.26154 0.95842 0.96355 1.00877 1.70199 1.07738 1.41083 1.35791 0.84888 0.78660 0.77584 0.76693 1.17932 1.19956 1.19856 1.22467 0.96560 0.91384 0.96979 1.23880 0.96039 1.02615 0.88310 1.68528 1.08250 1.10646 1.30025 1.24305 0.96170 0.90842 1.00254 1.24321 0.95054 1.02904 0.88939 1.68276 1.07610 1.09187 1.31366 0.90588 0.91543 0.94023 0.83488 0.91237 0.92580 0.90960 0.94585 0.91974 0.86692 0.91576 0.90828 0.87711 0.87347 0.87776 0.91998 0.79244 0.78386 0.78930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 9.40 71.98 0.68 -1.38 16 2 C 0.14 2.03 2.88 44.17 0.13 2.16 16 3 H 0.09 0.84 7.78 -2.39 -0.02 0.82 16 4 N -0.69 -12.69 6.06 -495.44 -3.00 -15.69 16 5 C 0.07 1.16 5.48 86.30 0.47 1.63 16 6 C -0.12 -2.58 5.80 30.59 0.18 -2.40 16 7 C 0.12 2.56 5.45 86.38 0.47 3.03 16 8 N -0.61 -16.26 2.87 -846.76 -2.43 -18.69 16 9 C 0.07 1.23 10.29 127.77 1.31 2.54 16 10 C 0.53 20.50 7.69 87.66 0.67 21.17 16 11 O -0.56 -27.25 15.44 -3.03 -0.05 -27.29 16 12 C -0.12 -5.09 4.71 71.24 0.34 -4.75 16 13 S -0.16 -8.85 20.57 -56.49 -1.16 -10.02 16 14 C -0.55 -31.60 9.50 67.95 0.65 -30.96 16 15 H 0.08 4.46 7.80 -2.91 -0.02 4.43 16 16 C 0.01 0.71 5.49 84.86 0.47 1.18 16 17 N -0.91 -56.76 13.22 21.65 0.29 -56.48 16 18 Si 1.00 44.01 29.55 68.60 2.03 46.03 16 19 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 20 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 21 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 22 C 0.07 1.03 5.70 42.55 0.24 1.28 16 23 C 0.05 0.67 10.90 84.68 0.92 1.60 16 24 N -0.46 -6.85 10.50 -195.22 -2.05 -8.90 16 25 C 0.04 0.48 11.22 84.67 0.95 1.43 16 26 C 0.05 0.60 11.22 84.67 0.95 1.55 16 27 N -0.45 -8.12 9.46 -183.30 -1.73 -9.85 16 28 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.07 1.04 7.45 -2.39 -0.02 1.02 16 30 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.35 6.46 7.86 -89.69 -0.70 5.76 16 32 H 0.07 1.28 7.44 -2.39 -0.02 1.26 16 33 H 0.06 0.64 8.06 -2.38 -0.02 0.62 16 34 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.06 1.66 7.42 -2.39 -0.02 1.64 16 37 H 0.12 1.51 7.89 -2.38 -0.02 1.49 16 38 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.07 1.33 6.44 -2.39 -0.02 1.31 16 40 H 0.10 1.08 7.89 -2.39 -0.02 1.06 16 41 H 0.11 4.00 7.40 -2.40 -0.02 3.99 16 42 H 0.10 3.94 8.11 -2.39 -0.02 3.92 16 43 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 44 H 0.19 1.36 8.06 -2.91 -0.02 1.33 16 45 H 0.20 0.78 8.06 -2.91 -0.02 0.76 16 46 H 0.19 1.29 8.06 -2.91 -0.02 1.27 16 Total: -1.00 -84.52 399.48 0.59 -83.94 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: 0.27 Total: 18.87 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: 8.43 Total: -1.92 kcal Atomic # 7 Polarization: -100.68 SS G_CDS: -8.93 Total: -109.61 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -0.05 Total: -27.29 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: -8.85 SS G_CDS: -1.16 Total: -10.02 kcal Total: -84.52 0.59 -83.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716529540.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.159 kcal (2) G-P(sol) polarization free energy of solvation -84.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds