Wall clock time and date at job start Tue Mar 31 2020 21:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.47383 * 2 1 4 4 C 1.50699 * 109.46937 * 239.99429 * 2 1 3 5 5 O 1.21288 * 120.00115 * 251.51420 * 4 2 1 6 6 N 1.34770 * 119.99958 * 71.51821 * 4 2 1 7 7 C 1.47423 * 125.64860 * 3.65600 * 6 4 2 8 8 C 1.54912 * 104.82937 * 204.09309 * 7 6 4 9 9 C 1.55397 * 101.67081 * 323.07259 * 8 7 6 10 10 C 1.47020 * 125.64795 * 183.61384 * 6 4 2 11 11 H 1.09000 * 109.88530 * 59.40706 * 10 6 4 12 12 C 1.53001 * 109.88693 * 298.39444 * 10 6 4 13 13 N 1.46500 * 109.47423 * 79.18373 * 12 10 6 14 14 C 1.36936 * 120.00494 * 187.34892 * 13 12 10 15 15 H 1.07995 * 119.99519 * 359.97438 * 14 13 12 16 16 C 1.38809 * 120.00094 * 180.02562 * 14 13 12 17 17 N 1.31625 * 120.00002 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00014 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47357 * 89.99608 * 18 16 14 20 20 H 1.48497 * 109.47452 * 329.99971 * 18 16 14 21 21 H 1.48499 * 109.47317 * 209.99754 * 18 16 14 22 22 C 1.50701 * 109.46934 * 119.99554 * 2 1 3 23 23 C 1.38421 * 120.02634 * 59.72570 * 22 2 1 24 24 F 1.35099 * 120.01171 * 359.97438 * 23 22 2 25 25 C 1.38471 * 119.97589 * 179.79443 * 23 22 2 26 26 C 1.38215 * 120.02429 * 0.47588 * 25 23 22 27 27 C 1.38207 * 120.04662 * 359.75195 * 26 25 23 28 28 C 1.38420 * 120.02507 * 239.99666 * 22 2 1 29 29 F 1.35095 * 120.01203 * 0.02562 * 28 22 2 30 30 H 1.08997 * 109.46808 * 292.72291 * 1 2 3 31 31 H 1.09003 * 109.46868 * 52.72070 * 1 2 3 32 32 H 1.08996 * 109.47192 * 172.72398 * 1 2 3 33 33 H 1.08997 * 110.36954 * 322.93015 * 7 6 4 34 34 H 1.09000 * 110.36980 * 85.14986 * 7 6 4 35 35 H 1.08995 * 111.00707 * 81.06953 * 8 7 6 36 36 H 1.09007 * 111.00225 * 204.87728 * 8 7 6 37 37 H 1.08998 * 110.69541 * 277.05512 * 9 8 7 38 38 H 1.08997 * 110.85828 * 153.69571 * 9 8 7 39 39 H 1.09004 * 109.46777 * 319.19095 * 12 10 6 40 40 H 1.08995 * 109.47678 * 199.18625 * 12 10 6 41 41 H 0.97006 * 119.99461 * 7.34630 * 13 12 10 42 42 H 0.97003 * 119.99965 * 0.02562 * 17 16 14 43 43 H 1.08004 * 119.99332 * 180.23095 * 25 23 22 44 44 H 1.08000 * 119.97533 * 179.72607 * 26 25 23 45 45 H 1.07998 * 119.98384 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.5485 -1.8036 -1.1312 6 7 1.9081 -0.1313 -2.4409 7 6 1.3735 1.2185 -2.6967 8 6 0.8676 1.1738 -4.1602 9 6 1.9390 0.2736 -4.8359 10 6 2.2841 -0.7406 -3.7250 11 1 1.7220 -1.6621 -3.8768 12 6 3.7848 -1.0383 -3.7402 13 7 4.0461 -2.2696 -2.9905 14 6 5.3349 -2.6573 -2.7383 15 1 6.1589 -2.0556 -3.0923 16 6 5.5824 -3.8242 -2.0285 17 7 4.5782 -4.5579 -1.5974 18 14 7.3406 -4.3535 -1.6850 19 1 7.7909 -3.7685 -0.3964 20 1 8.2237 -3.8776 -2.7799 21 1 7.4051 -5.8349 -1.6055 22 6 2.0324 -0.7103 1.2305 23 6 1.6936 -2.0339 1.4531 24 9 0.9119 -2.6894 0.5674 25 6 2.1592 -2.6868 2.5820 26 6 2.9538 -2.0145 3.4913 27 6 3.2888 -0.6917 3.2725 28 6 2.8282 -0.0381 2.1420 29 9 3.1547 1.2554 1.9291 30 1 -0.3633 0.3970 0.9479 31 1 -0.3633 0.6225 -0.8177 32 1 -0.3633 -1.0193 -0.1301 33 1 0.5494 1.4353 -2.0170 34 1 2.1602 1.9651 -2.5883 35 1 -0.1191 0.7144 -4.2187 36 1 0.8587 2.1707 -4.6012 37 1 2.8167 0.8589 -5.1098 38 1 1.5256 -0.2345 -5.7070 39 1 4.3240 -0.2109 -3.2789 40 1 4.1204 -1.1617 -4.7698 41 1 3.3059 -2.8103 -2.6728 42 1 3.6652 -4.2832 -1.7761 43 1 1.8981 -3.7206 2.7540 44 1 3.3129 -2.5233 4.3738 45 1 3.9094 -0.1672 3.9839 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716781412.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:14 Heat of formation + Delta-G solvation = -67.302762 kcal Electronic energy + Delta-G solvation = -31496.766888 eV Core-core repulsion = 27151.277031 eV Total energy + Delta-G solvation = -4345.489857 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -48.94224 -48.59632 -40.09743 -38.67640 -37.06155 -34.71404 -33.87848 -31.43268 -31.17436 -30.11801 -29.37167 -28.40733 -25.14723 -24.42869 -23.10812 -22.70591 -22.31103 -21.43592 -20.54339 -18.63333 -17.92665 -17.60214 -16.88361 -16.46287 -16.20653 -15.78866 -15.67022 -15.35845 -14.98541 -14.80918 -14.39733 -14.20343 -14.01204 -13.92944 -13.45983 -13.41034 -13.16244 -12.98565 -12.81210 -12.56761 -12.30785 -12.13806 -12.06602 -11.86514 -11.71834 -11.47242 -11.34433 -11.10186 -10.86517 -10.80979 -10.58501 -10.51484 -10.25493 -9.84541 -9.15094 -8.85812 -8.69535 -8.60580 -8.51960 -8.14876 -6.58029 -5.76555 -2.70782 1.09849 1.18902 3.18021 3.25641 3.56354 3.63332 3.70103 3.83263 4.08763 4.39464 4.51559 4.58003 4.61815 4.75907 4.88513 4.88832 4.93959 5.08328 5.13912 5.22562 5.31067 5.35222 5.38442 5.49789 5.61226 5.72308 5.75208 5.84134 5.87078 5.90426 5.99081 5.99764 6.06370 6.08278 6.10763 6.21145 6.22671 6.29578 6.44226 6.49649 6.82491 6.92010 7.00303 7.94906 8.08018 8.75888 9.15247 9.68015 10.52279 10.69359 11.74207 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007727 B = 0.006776 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3622.730191 B = 4131.256872 C = 6553.292272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.063 4.063 3 H 0.101 0.899 4 C 0.518 3.482 5 O -0.461 6.461 6 N -0.615 5.615 7 C 0.095 3.905 8 C -0.131 4.131 9 C -0.123 4.123 10 C 0.130 3.870 11 H 0.071 0.929 12 C 0.154 3.846 13 N -0.727 5.727 14 C -0.326 4.326 15 H 0.053 0.947 16 C -0.043 4.043 17 N -0.942 5.942 18 Si 1.077 2.923 19 H -0.300 1.300 20 H -0.298 1.298 21 H -0.290 1.290 22 C -0.143 4.143 23 C 0.177 3.823 24 F -0.117 7.117 25 C -0.164 4.164 26 C -0.060 4.060 27 C -0.172 4.172 28 C 0.132 3.868 29 F -0.134 7.134 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.017 0.983 40 H 0.016 0.984 41 H 0.379 0.621 42 H 0.262 0.738 43 H 0.142 0.858 44 H 0.141 0.859 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.916 13.971 5.439 19.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.084 4.084 3 H 0.119 0.881 4 C 0.303 3.697 5 O -0.330 6.330 6 N -0.353 5.353 7 C -0.028 4.028 8 C -0.169 4.169 9 C -0.162 4.162 10 C 0.027 3.973 11 H 0.089 0.911 12 C 0.025 3.975 13 N -0.376 5.376 14 C -0.458 4.458 15 H 0.071 0.929 16 C -0.242 4.242 17 N -0.587 5.587 18 Si 0.910 3.090 19 H -0.228 1.228 20 H -0.225 1.225 21 H -0.216 1.216 22 C -0.145 4.145 23 C 0.157 3.843 24 F -0.095 7.095 25 C -0.183 4.183 26 C -0.079 4.079 27 C -0.191 4.191 28 C 0.113 3.887 29 F -0.113 7.113 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.035 0.965 40 H 0.033 0.967 41 H 0.217 0.783 42 H 0.074 0.926 43 H 0.159 0.841 44 H 0.159 0.841 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.504 12.257 6.189 17.289 hybrid contribution -0.913 1.412 -0.882 1.899 sum -11.418 13.670 5.308 18.585 Atomic orbital electron populations 1.21871 0.91913 1.03766 1.02600 1.20043 0.97717 1.00212 0.90463 0.88080 1.19863 0.80125 0.86953 0.82775 1.90911 1.38733 1.19230 1.84125 1.48366 1.64857 1.16310 1.05774 1.22375 0.98102 0.85451 0.96910 1.22784 0.99039 1.00449 0.94668 1.22669 0.99011 0.97177 0.97338 1.21877 0.97559 0.95828 0.82042 0.91099 1.20881 0.90717 0.90891 0.95049 1.42528 1.05698 1.23718 1.65657 1.19939 0.84445 1.07909 1.33503 0.92902 1.25512 1.05710 0.94490 0.98479 1.70681 0.99364 1.40077 1.48616 0.83292 0.74500 0.75928 0.75329 1.22824 1.22540 1.21616 1.19308 1.03205 0.94453 0.97526 1.17019 0.91306 0.88783 0.87217 1.91527 1.70820 1.80327 1.66868 1.21213 1.01197 1.01433 0.94455 1.20790 0.95218 0.93081 0.98769 1.21043 1.04002 0.96142 0.97896 1.17108 0.97408 0.78951 0.95281 1.91472 1.90899 1.34098 1.94822 0.91504 0.91302 0.91075 0.90759 0.91825 0.90779 0.90144 0.90418 0.90180 0.96470 0.96689 0.78251 0.92580 0.84063 0.84148 0.84319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 8.71 37.16 0.32 -1.43 16 2 C -0.06 -0.97 2.09 -92.92 -0.19 -1.17 16 3 H 0.10 1.43 6.91 -51.93 -0.36 1.07 16 4 C 0.52 10.07 6.55 -10.99 -0.07 10.00 16 5 O -0.46 -11.44 10.55 5.55 0.06 -11.38 16 6 N -0.62 -10.30 3.06 -163.01 -0.50 -10.80 16 7 C 0.09 1.11 6.53 -2.53 -0.02 1.09 16 8 C -0.13 -1.28 7.09 -24.45 -0.17 -1.45 16 9 C -0.12 -1.53 6.44 -24.76 -0.16 -1.69 16 10 C 0.13 2.30 3.06 -66.95 -0.20 2.10 16 11 H 0.07 1.38 8.04 -51.93 -0.42 0.96 16 12 C 0.15 3.48 5.60 -4.04 -0.02 3.46 16 13 N -0.73 -20.57 4.09 -59.91 -0.25 -20.82 16 14 C -0.33 -10.23 9.99 -15.06 -0.15 -10.38 16 15 H 0.05 1.64 7.83 -52.49 -0.41 1.23 16 16 C -0.04 -1.38 5.50 -17.43 -0.10 -1.48 16 17 N -0.94 -31.71 13.70 55.49 0.76 -30.95 16 18 Si 1.08 28.44 29.92 -169.99 -5.09 23.36 16 19 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 20 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 21 H -0.29 -7.62 7.11 56.52 0.40 -7.21 16 22 C -0.14 -2.41 4.51 -104.49 -0.47 -2.88 16 23 C 0.18 3.13 6.11 -39.43 -0.24 2.89 16 24 F -0.12 -2.27 13.52 2.25 0.03 -2.24 16 25 C -0.16 -2.52 10.03 -39.50 -0.40 -2.92 16 26 C -0.06 -0.79 10.04 -39.60 -0.40 -1.18 16 27 C -0.17 -2.31 10.02 -39.51 -0.40 -2.71 16 28 C 0.13 2.06 7.25 -39.43 -0.29 1.77 16 29 F -0.13 -2.03 16.19 2.25 0.04 -2.00 16 30 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 31 H 0.07 0.69 5.78 -51.93 -0.30 0.39 16 32 H 0.07 0.97 6.51 -51.93 -0.34 0.63 16 33 H 0.07 0.72 5.32 -51.93 -0.28 0.44 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 37 H 0.08 0.94 7.85 -51.93 -0.41 0.53 16 38 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.02 0.35 8.04 -51.93 -0.42 -0.07 16 41 H 0.38 11.30 4.32 -40.82 -0.18 11.13 16 42 H 0.26 8.98 6.77 -40.82 -0.28 8.70 16 43 H 0.14 1.94 8.06 -52.48 -0.42 1.51 16 44 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 45 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 362.24 15.07 5.46 5.46 Total: -1.00 -38.55 362.24 -8.42 -46.97 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -5.98 Total: 8.35 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -2.95 Total: -5.97 kcal Atomic # 7 Polarization: -62.58 SS G_CDS: 0.02 Total: -62.56 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.06 Total: -11.38 kcal Atomic # 9 Polarization: -4.31 SS G_CDS: 0.07 Total: -4.24 kcal Atomic # 14 Polarization: 28.44 SS G_CDS: -5.09 Total: 23.36 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -38.55 -8.42 -46.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716781412.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.330 kcal (2) G-P(sol) polarization free energy of solvation -38.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds