Wall clock time and date at job start Tue Mar 31 2020 21:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.47383 * 2 1 4 4 C 1.50699 * 109.46937 * 239.99429 * 2 1 3 5 5 O 1.21288 * 120.00115 * 251.51420 * 4 2 1 6 6 N 1.34770 * 119.99958 * 71.51821 * 4 2 1 7 7 C 1.47423 * 125.64860 * 3.65600 * 6 4 2 8 8 C 1.54912 * 104.82937 * 204.09309 * 7 6 4 9 9 C 1.55397 * 101.67081 * 323.07259 * 8 7 6 10 10 C 1.47020 * 125.64795 * 183.61384 * 6 4 2 11 11 H 1.09000 * 109.88530 * 59.40706 * 10 6 4 12 12 C 1.53001 * 109.88693 * 298.39444 * 10 6 4 13 13 N 1.46500 * 109.47423 * 79.18373 * 12 10 6 14 14 C 1.36936 * 120.00494 * 187.34892 * 13 12 10 15 15 H 1.07995 * 119.99519 * 359.97438 * 14 13 12 16 16 C 1.38809 * 120.00094 * 180.02562 * 14 13 12 17 17 N 1.31625 * 120.00002 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00014 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47357 * 89.99608 * 18 16 14 20 20 H 1.48497 * 109.47452 * 329.99971 * 18 16 14 21 21 H 1.48499 * 109.47317 * 209.99754 * 18 16 14 22 22 C 1.50701 * 109.46934 * 119.99554 * 2 1 3 23 23 C 1.38421 * 120.02634 * 59.72570 * 22 2 1 24 24 F 1.35099 * 120.01171 * 359.97438 * 23 22 2 25 25 C 1.38471 * 119.97589 * 179.79443 * 23 22 2 26 26 C 1.38215 * 120.02429 * 0.47588 * 25 23 22 27 27 C 1.38207 * 120.04662 * 359.75195 * 26 25 23 28 28 C 1.38420 * 120.02507 * 239.99666 * 22 2 1 29 29 F 1.35095 * 120.01203 * 0.02562 * 28 22 2 30 30 H 1.08997 * 109.46808 * 292.72291 * 1 2 3 31 31 H 1.09003 * 109.46868 * 52.72070 * 1 2 3 32 32 H 1.08996 * 109.47192 * 172.72398 * 1 2 3 33 33 H 1.08997 * 110.36954 * 322.93015 * 7 6 4 34 34 H 1.09000 * 110.36980 * 85.14986 * 7 6 4 35 35 H 1.08995 * 111.00707 * 81.06953 * 8 7 6 36 36 H 1.09007 * 111.00225 * 204.87728 * 8 7 6 37 37 H 1.08998 * 110.69541 * 277.05512 * 9 8 7 38 38 H 1.08997 * 110.85828 * 153.69571 * 9 8 7 39 39 H 1.09004 * 109.46777 * 319.19095 * 12 10 6 40 40 H 1.08995 * 109.47678 * 199.18625 * 12 10 6 41 41 H 0.97006 * 119.99461 * 7.34630 * 13 12 10 42 42 H 0.97003 * 119.99965 * 0.02562 * 17 16 14 43 43 H 1.08004 * 119.99332 * 180.23095 * 25 23 22 44 44 H 1.08000 * 119.97533 * 179.72607 * 26 25 23 45 45 H 1.07998 * 119.98384 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.5485 -1.8036 -1.1312 6 7 1.9081 -0.1313 -2.4409 7 6 1.3735 1.2185 -2.6967 8 6 0.8676 1.1738 -4.1602 9 6 1.9390 0.2736 -4.8359 10 6 2.2841 -0.7406 -3.7250 11 1 1.7220 -1.6621 -3.8768 12 6 3.7848 -1.0383 -3.7402 13 7 4.0461 -2.2696 -2.9905 14 6 5.3349 -2.6573 -2.7383 15 1 6.1589 -2.0556 -3.0923 16 6 5.5824 -3.8242 -2.0285 17 7 4.5782 -4.5579 -1.5974 18 14 7.3406 -4.3535 -1.6850 19 1 7.7909 -3.7685 -0.3964 20 1 8.2237 -3.8776 -2.7799 21 1 7.4051 -5.8349 -1.6055 22 6 2.0324 -0.7103 1.2305 23 6 1.6936 -2.0339 1.4531 24 9 0.9119 -2.6894 0.5674 25 6 2.1592 -2.6868 2.5820 26 6 2.9538 -2.0145 3.4913 27 6 3.2888 -0.6917 3.2725 28 6 2.8282 -0.0381 2.1420 29 9 3.1547 1.2554 1.9291 30 1 -0.3633 0.3970 0.9479 31 1 -0.3633 0.6225 -0.8177 32 1 -0.3633 -1.0193 -0.1301 33 1 0.5494 1.4353 -2.0170 34 1 2.1602 1.9651 -2.5883 35 1 -0.1191 0.7144 -4.2187 36 1 0.8587 2.1707 -4.6012 37 1 2.8167 0.8589 -5.1098 38 1 1.5256 -0.2345 -5.7070 39 1 4.3240 -0.2109 -3.2789 40 1 4.1204 -1.1617 -4.7698 41 1 3.3059 -2.8103 -2.6728 42 1 3.6652 -4.2832 -1.7761 43 1 1.8981 -3.7206 2.7540 44 1 3.3129 -2.5233 4.3738 45 1 3.9094 -0.1672 3.9839 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716781412.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:13 Heat of formation + Delta-G solvation = -92.243320 kcal Electronic energy + Delta-G solvation = -31497.848392 eV Core-core repulsion = 27151.277031 eV Total energy + Delta-G solvation = -4346.571361 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -50.11508 -49.95053 -41.43258 -39.84361 -38.40636 -36.63631 -35.33551 -33.24804 -32.51520 -31.27152 -30.57436 -29.99423 -26.56490 -25.96816 -24.72722 -24.02487 -23.85851 -22.60630 -21.76115 -20.01717 -19.29776 -19.12718 -18.65953 -17.68371 -17.61751 -17.11717 -16.85122 -16.60653 -16.41765 -16.27927 -15.74481 -15.67164 -15.52564 -15.25953 -15.23079 -15.01709 -14.62700 -14.17259 -14.01323 -13.80068 -13.66281 -13.38487 -13.21535 -13.10955 -12.93409 -12.85793 -12.59880 -12.57991 -12.45179 -12.17235 -12.07552 -11.92051 -11.88223 -11.60977 -11.16646 -10.90635 -10.58144 -9.89651 -9.71838 -9.57849 -8.89822 -8.30162 -5.17178 -0.06598 0.01060 1.48847 1.62537 1.76587 1.77344 1.98642 2.38825 2.72067 2.92187 3.23505 3.37720 3.46160 3.49283 3.62128 3.63568 3.81798 3.86668 3.93880 4.02176 4.16776 4.18419 4.21502 4.26759 4.31159 4.48472 4.62842 4.65366 4.70817 4.75456 4.80548 4.83777 4.89499 4.93307 4.98402 5.04545 5.07820 5.11027 5.15591 5.17651 5.33778 5.51782 5.58582 5.77990 6.60199 6.63312 7.19894 7.43504 8.21546 8.32261 9.22330 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007727 B = 0.006776 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3622.730191 B = 4131.256872 C = 6553.292272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.056 4.056 3 H 0.115 0.885 4 C 0.504 3.496 5 O -0.525 6.525 6 N -0.617 5.617 7 C 0.085 3.915 8 C -0.115 4.115 9 C -0.115 4.115 10 C 0.132 3.868 11 H 0.044 0.956 12 C 0.152 3.848 13 N -0.739 5.739 14 C -0.335 4.335 15 H 0.050 0.950 16 C -0.105 4.105 17 N -0.965 5.965 18 Si 1.128 2.872 19 H -0.290 1.290 20 H -0.274 1.274 21 H -0.288 1.288 22 C -0.161 4.161 23 C 0.140 3.860 24 F -0.138 7.138 25 C -0.179 4.179 26 C -0.053 4.053 27 C -0.165 4.165 28 C 0.115 3.885 29 F -0.134 7.134 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.048 0.952 33 H 0.099 0.901 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.117 0.883 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.003 0.997 40 H 0.020 0.980 41 H 0.369 0.631 42 H 0.244 0.756 43 H 0.149 0.851 44 H 0.182 0.818 45 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.894 16.611 5.824 21.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.077 4.077 3 H 0.133 0.867 4 C 0.291 3.709 5 O -0.399 6.399 6 N -0.352 5.352 7 C -0.036 4.036 8 C -0.153 4.153 9 C -0.153 4.153 10 C 0.028 3.972 11 H 0.063 0.937 12 C 0.024 3.976 13 N -0.387 5.387 14 C -0.467 4.467 15 H 0.068 0.932 16 C -0.297 4.297 17 N -0.613 5.613 18 Si 0.954 3.046 19 H -0.217 1.217 20 H -0.200 1.200 21 H -0.214 1.214 22 C -0.163 4.163 23 C 0.121 3.879 24 F -0.117 7.117 25 C -0.198 4.198 26 C -0.070 4.070 27 C -0.183 4.183 28 C 0.096 3.904 29 F -0.112 7.112 30 H 0.106 0.894 31 H 0.113 0.887 32 H 0.068 0.932 33 H 0.117 0.883 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.135 0.865 37 H 0.102 0.898 38 H 0.114 0.886 39 H 0.021 0.979 40 H 0.038 0.962 41 H 0.206 0.794 42 H 0.054 0.946 43 H 0.167 0.833 44 H 0.199 0.801 45 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -10.520 14.995 6.527 19.445 hybrid contribution -0.909 0.654 -1.014 1.511 sum -11.429 15.649 5.513 20.147 Atomic orbital electron populations 1.21844 0.89440 1.03133 1.04768 1.20077 0.99658 0.99862 0.88124 0.86668 1.20683 0.79220 0.86505 0.84452 1.90880 1.41744 1.22039 1.85270 1.48520 1.63924 1.18088 1.04699 1.22767 0.99126 0.82603 0.99140 1.22812 0.98191 1.01748 0.92518 1.22668 1.00470 0.96283 0.95884 1.21810 0.93530 0.97022 0.84865 0.93737 1.21064 0.94466 0.88154 0.93880 1.42731 1.04413 1.25444 1.66109 1.20297 0.85756 1.07833 1.32796 0.93198 1.27126 1.09068 0.94967 0.98493 1.70813 0.98973 1.40973 1.50519 0.82641 0.70147 0.75629 0.76210 1.21717 1.19961 1.21429 1.19544 1.03850 0.94532 0.98406 1.17458 0.92710 0.89704 0.88035 1.91463 1.71582 1.80810 1.67818 1.21554 1.01657 1.02125 0.94474 1.21270 0.93609 0.92981 0.99169 1.21507 1.03102 0.96284 0.97431 1.17357 0.97768 0.79220 0.96063 1.91465 1.90890 1.33929 1.94919 0.89440 0.88740 0.93247 0.88265 0.90988 0.89740 0.86452 0.89779 0.88561 0.97902 0.96232 0.79413 0.94558 0.83346 0.80114 0.80959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 8.71 71.98 0.63 -2.54 16 2 C -0.06 -1.74 2.09 -12.28 -0.03 -1.77 16 3 H 0.12 3.15 6.91 -2.39 -0.02 3.14 16 4 C 0.50 20.32 6.55 87.66 0.57 20.90 16 5 O -0.53 -27.80 10.55 -3.05 -0.03 -27.83 16 6 N -0.62 -20.62 3.06 -788.05 -2.41 -23.03 16 7 C 0.08 1.75 6.53 86.86 0.57 2.32 16 8 C -0.12 -1.78 7.09 32.07 0.23 -1.56 16 9 C -0.11 -2.58 6.44 31.87 0.21 -2.38 16 10 C 0.13 4.73 3.06 45.34 0.14 4.87 16 11 H 0.04 1.82 8.04 -2.39 -0.02 1.80 16 12 C 0.15 7.12 5.60 86.38 0.48 7.60 16 13 N -0.74 -43.86 4.09 -343.46 -1.40 -45.26 16 14 C -0.33 -21.67 9.99 84.03 0.84 -20.83 16 15 H 0.05 3.17 7.83 -2.91 -0.02 3.15 16 16 C -0.10 -6.83 5.50 84.86 0.47 -6.36 16 17 N -0.97 -67.63 13.70 21.65 0.30 -67.33 16 18 Si 1.13 58.07 29.92 68.60 2.05 60.12 16 19 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 20 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 21 H -0.29 -14.65 7.11 99.48 0.71 -13.94 16 22 C -0.16 -5.56 4.51 -19.78 -0.09 -5.65 16 23 C 0.14 5.25 6.11 22.37 0.14 5.38 16 24 F -0.14 -5.83 13.52 44.97 0.61 -5.22 16 25 C -0.18 -5.65 10.03 22.32 0.22 -5.42 16 26 C -0.05 -1.29 10.04 22.26 0.22 -1.07 16 27 C -0.16 -4.13 10.02 22.32 0.22 -3.90 16 28 C 0.12 3.53 7.25 22.37 0.16 3.69 16 29 F -0.13 -3.89 16.19 44.97 0.73 -3.16 16 30 H 0.09 1.69 8.13 -2.39 -0.02 1.67 16 31 H 0.09 1.66 5.78 -2.39 -0.01 1.64 16 32 H 0.05 1.39 6.51 -2.39 -0.02 1.38 16 33 H 0.10 1.56 5.32 -2.39 -0.01 1.55 16 34 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.12 1.08 8.14 -2.38 -0.02 1.06 16 37 H 0.08 1.82 7.85 -2.39 -0.02 1.80 16 38 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.00 0.15 8.14 -2.38 -0.02 0.13 16 40 H 0.02 0.91 8.04 -2.39 -0.02 0.89 16 41 H 0.37 23.49 4.32 -92.70 -0.40 23.08 16 42 H 0.24 17.72 6.77 -92.71 -0.63 17.09 16 43 H 0.15 4.25 8.06 -2.91 -0.02 4.23 16 44 H 0.18 2.87 8.06 -2.91 -0.02 2.84 16 45 H 0.17 3.07 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -90.82 362.24 5.59 -85.23 By element: Atomic # 1 Polarization: 32.43 SS G_CDS: 0.77 Total: 33.19 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: 4.98 Total: -6.71 kcal Atomic # 7 Polarization: -132.10 SS G_CDS: -3.52 Total: -135.62 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -0.03 Total: -27.83 kcal Atomic # 9 Polarization: -9.72 SS G_CDS: 1.34 Total: -8.38 kcal Atomic # 14 Polarization: 58.07 SS G_CDS: 2.05 Total: 60.12 kcal Total: -90.82 5.59 -85.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716781412.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.009 kcal (2) G-P(sol) polarization free energy of solvation -90.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds