Wall clock time and date at job start Tue Mar 31 2020 21:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47037 * 2 1 4 4 C 1.50697 * 109.46969 * 120.00347 * 2 1 3 5 5 O 1.21283 * 120.00521 * 119.72525 * 4 2 1 6 6 N 1.34784 * 119.99774 * 299.99631 * 4 2 1 7 7 C 1.46499 * 119.99893 * 179.72962 * 6 4 2 8 8 C 1.53786 * 113.61109 * 254.13469 * 7 6 4 9 9 C 1.53948 * 87.01916 * 220.05087 * 8 7 6 10 10 C 1.52996 * 113.67119 * 139.93484 * 9 8 7 11 11 N 1.46504 * 109.47481 * 87.43635 * 10 9 8 12 12 C 1.36929 * 120.00124 * 180.02562 * 11 10 9 13 13 H 1.08005 * 120.00342 * 359.97438 * 12 11 10 14 14 C 1.38811 * 119.99775 * 180.02562 * 12 11 10 15 15 N 1.31625 * 120.00348 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00298 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47035 * 59.99531 * 16 14 12 18 18 H 1.48497 * 109.47354 * 180.02562 * 16 14 12 19 19 H 1.48509 * 109.47005 * 300.00400 * 16 14 12 20 20 C 1.53778 * 113.61069 * 156.53341 * 7 6 4 21 21 C 1.50700 * 109.47038 * 239.99584 * 2 1 3 22 22 C 1.38265 * 119.96194 * 119.99983 * 21 2 1 23 23 C 1.38209 * 120.06924 * 179.97438 * 22 21 2 24 24 C 1.38409 * 120.00311 * 0.02562 * 23 22 21 25 25 F 1.35097 * 120.03770 * 180.02562 * 24 23 22 26 26 C 1.38650 * 119.92970 * 0.02562 * 24 23 22 27 27 F 1.35102 * 120.03581 * 180.02562 * 26 24 23 28 28 C 1.38214 * 119.97009 * 299.73033 * 21 2 1 29 29 H 1.09001 * 109.47339 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47277 * 299.99945 * 1 2 3 31 31 H 1.09003 * 109.47126 * 59.99926 * 1 2 3 32 32 H 0.97005 * 119.99846 * 359.72750 * 6 4 2 33 33 H 1.08998 * 112.85336 * 25.32968 * 7 6 4 34 34 H 1.09005 * 113.61382 * 334.57254 * 8 7 6 35 35 H 1.09000 * 113.61125 * 105.47172 * 8 7 6 36 36 H 1.09004 * 113.61509 * 270.80332 * 9 8 7 37 37 H 1.09001 * 109.47724 * 207.44403 * 10 9 8 38 38 H 1.09001 * 109.46722 * 327.44089 * 10 9 8 39 39 H 0.97007 * 119.99390 * 0.02562 * 11 10 9 40 40 H 0.97003 * 119.99993 * 180.02562 * 15 14 12 41 41 H 1.09001 * 113.61193 * 254.52393 * 20 7 6 42 42 H 1.08996 * 113.62218 * 25.42623 * 20 7 6 43 43 H 1.08005 * 119.96189 * 359.97438 * 22 21 2 44 44 H 1.07997 * 119.99796 * 179.97438 * 23 22 21 45 45 H 1.07996 * 119.99278 * 359.97438 * 28 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7254 -1.6995 1.1192 6 7 1.7067 -0.2500 2.4546 7 6 2.1901 -0.9441 3.6507 8 6 1.1024 -1.7563 4.3733 9 6 1.7214 -1.2600 5.6926 10 6 0.6857 -0.8931 6.7573 11 7 0.3380 -2.0867 7.5323 12 6 -0.5767 -2.0013 8.5476 13 1 -1.0417 -1.0540 8.7775 14 6 -0.9057 -3.1322 9.2823 15 7 -0.3380 -4.2865 9.0033 16 14 -2.1531 -3.0158 10.6679 17 1 -3.4543 -2.5497 10.1247 18 1 -2.3266 -4.3523 11.2914 19 1 -1.6697 -2.0524 11.6895 20 6 2.2461 -0.0505 4.9010 21 6 2.0323 -0.7105 -1.2304 22 6 2.8272 -0.0379 -2.1401 23 6 3.2895 -0.6875 -3.2690 24 6 2.9565 -2.0126 -3.4902 25 9 3.4085 -2.6484 -4.5932 26 6 2.1586 -2.6868 -2.5786 27 9 1.8327 -3.9804 -2.7921 28 6 1.7026 -2.0354 -1.4456 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.1523 0.5411 2.5436 33 1 3.1079 -1.5046 3.4730 34 1 0.0922 -1.3859 4.1984 35 1 1.1910 -2.8327 4.2261 36 1 2.5107 -1.9071 6.0753 37 1 1.1010 -0.1361 7.4226 38 1 -0.2088 -0.5005 6.2739 39 1 0.7559 -2.9375 7.3261 40 1 -0.5683 -5.0768 9.5164 41 1 3.2568 0.2483 5.1792 42 1 1.5493 0.7871 4.8707 43 1 3.0870 0.9963 -1.9682 44 1 3.9099 -0.1609 -3.9790 45 1 1.0856 -2.5610 -0.7319 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717394337.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:29 Heat of formation + Delta-G solvation = -77.857381 kcal Electronic energy + Delta-G solvation = -28087.015118 eV Core-core repulsion = 23741.067579 eV Total energy + Delta-G solvation = -4345.947540 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.72968 -48.80292 -40.74080 -39.39958 -38.17710 -34.64975 -34.45133 -33.18167 -31.19087 -30.85682 -29.52936 -26.86708 -25.54868 -25.27350 -23.79287 -23.37977 -22.49239 -21.18067 -20.44145 -19.39610 -18.27032 -17.80982 -17.39807 -17.06447 -16.81699 -16.53370 -16.22960 -15.34931 -15.21827 -15.21345 -14.88274 -14.71592 -14.52672 -14.36774 -14.11050 -13.82489 -13.40848 -13.18190 -13.00860 -12.98560 -12.85122 -12.42450 -12.32045 -12.10056 -11.84008 -11.75376 -11.66087 -11.51203 -11.16943 -10.85494 -10.72801 -10.38954 -10.14723 -9.99559 -9.83355 -9.63044 -9.39591 -9.06492 -8.98991 -8.84729 -6.90646 -5.75395 -3.04093 0.50845 0.65773 2.41158 2.80322 3.17731 3.43868 3.44166 3.48042 3.49542 3.92412 4.04049 4.12757 4.42881 4.53691 4.57745 4.63053 4.67040 4.71605 4.79989 4.82890 4.99895 5.08743 5.14685 5.28086 5.37361 5.47408 5.49987 5.57745 5.60056 5.64195 5.71085 5.79646 5.88194 5.94667 6.02152 6.07424 6.21464 6.25548 6.37125 6.40727 6.58092 6.76681 6.90098 7.34412 7.69165 8.03749 8.43555 9.54366 10.13541 10.47857 11.47357 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021186 B = 0.001855 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.321060 B =15087.852437 C =15700.505081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.072 4.072 3 H 0.111 0.889 4 C 0.515 3.485 5 O -0.531 6.531 6 N -0.714 5.714 7 C 0.118 3.882 8 C -0.138 4.138 9 C -0.111 4.111 10 C 0.166 3.834 11 N -0.732 5.732 12 C -0.241 4.241 13 H 0.069 0.931 14 C -0.015 4.015 15 N -0.933 5.933 16 Si 0.907 3.093 17 H -0.286 1.286 18 H -0.291 1.291 19 H -0.286 1.286 20 C -0.137 4.137 21 C -0.049 4.049 22 C -0.093 4.093 23 C -0.128 4.128 24 C 0.065 3.935 25 F -0.131 7.131 26 C 0.068 3.932 27 F -0.128 7.128 28 C -0.090 4.090 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.400 0.600 33 H 0.112 0.888 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.018 0.982 38 H 0.018 0.982 39 H 0.384 0.616 40 H 0.256 0.744 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.140 0.860 44 H 0.146 0.854 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.033 13.787 -26.239 30.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.094 4.094 3 H 0.129 0.871 4 C 0.300 3.700 5 O -0.407 6.407 6 N -0.365 5.365 7 C 0.014 3.986 8 C -0.177 4.177 9 C -0.130 4.130 10 C 0.038 3.962 11 N -0.376 5.376 12 C -0.372 4.372 13 H 0.087 0.913 14 C -0.211 4.211 15 N -0.582 5.582 16 Si 0.738 3.262 17 H -0.213 1.213 18 H -0.217 1.217 19 H -0.213 1.213 20 C -0.175 4.175 21 C -0.049 4.049 22 C -0.111 4.111 23 C -0.147 4.147 24 C 0.045 3.955 25 F -0.109 7.109 26 C 0.048 3.952 27 F -0.107 7.107 28 C -0.109 4.109 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.235 0.765 33 H 0.130 0.870 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.111 0.889 37 H 0.036 0.964 38 H 0.036 0.964 39 H 0.218 0.782 40 H 0.065 0.935 41 H 0.090 0.910 42 H 0.103 0.897 43 H 0.158 0.842 44 H 0.164 0.836 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 6.426 13.037 -26.246 30.002 hybrid contribution -0.772 -0.324 0.597 1.028 sum 5.654 12.713 -25.649 29.180 Atomic orbital electron populations 1.21845 0.91338 1.03638 1.03398 1.20336 0.98208 1.00397 0.90414 0.87078 1.20402 0.80256 0.84772 0.84564 1.90755 1.37658 1.25721 1.86580 1.46035 1.53392 1.31595 1.05432 1.22695 0.98910 0.95016 0.82007 1.23471 0.98388 1.00596 0.95206 1.22565 0.99147 0.96709 0.94590 1.20592 0.93613 0.90874 0.91108 1.42349 1.50573 1.06551 1.38125 1.19182 1.15591 0.94633 1.07787 0.91310 1.24755 1.00605 0.95617 1.00109 1.69654 1.46279 0.99161 1.43075 0.86265 0.81217 0.76529 0.82141 1.21304 1.21688 1.21295 1.23327 1.01815 0.97724 0.94683 1.19211 0.97329 0.93166 0.95224 1.20942 0.96530 1.00558 0.93046 1.21000 1.01953 0.92122 0.99602 1.17720 1.00023 0.92174 0.85567 1.91527 1.87288 1.81891 1.50201 1.17643 1.01042 0.79996 0.96522 1.91543 1.90973 1.33420 1.94721 1.20889 1.00268 0.94653 0.95045 0.91500 0.91098 0.90885 0.76537 0.87004 0.89787 0.91140 0.88877 0.96384 0.96419 0.78240 0.93460 0.91001 0.89674 0.84186 0.83614 0.83758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.74 8.90 37.16 0.33 -0.41 16 2 C -0.07 -0.46 2.90 -92.93 -0.27 -0.73 16 3 H 0.11 0.41 7.87 -51.93 -0.41 0.00 16 4 C 0.51 5.19 7.02 -10.98 -0.08 5.12 16 5 O -0.53 -7.69 14.69 5.56 0.08 -7.61 16 6 N -0.71 -6.41 5.25 -53.02 -0.28 -6.68 16 7 C 0.12 1.36 4.21 -67.12 -0.28 1.08 16 8 C -0.14 -1.94 7.45 -25.83 -0.19 -2.13 16 9 C -0.11 -1.68 3.75 -89.72 -0.34 -2.02 16 10 C 0.17 3.21 6.10 -4.04 -0.02 3.19 16 11 N -0.73 -18.49 5.60 -59.91 -0.34 -18.83 16 12 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 13 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 14 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 15 N -0.93 -28.44 13.06 55.49 0.72 -27.71 16 16 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 18 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 C -0.14 -1.52 7.39 -25.92 -0.19 -1.71 16 21 C -0.05 -0.39 4.40 -104.62 -0.46 -0.85 16 22 C -0.09 -0.59 9.67 -39.58 -0.38 -0.97 16 23 C -0.13 -0.91 10.02 -39.53 -0.40 -1.31 16 24 C 0.07 0.65 7.31 -39.37 -0.29 0.36 16 25 F -0.13 -1.42 17.18 2.25 0.04 -1.38 16 26 C 0.07 0.75 7.31 -39.36 -0.29 0.46 16 27 F -0.13 -1.60 17.18 2.25 0.04 -1.57 16 28 C -0.09 -0.90 7.89 -39.53 -0.31 -1.21 16 29 H 0.07 0.43 7.40 -51.93 -0.38 0.04 16 30 H 0.07 0.29 7.57 -51.93 -0.39 -0.11 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.40 2.45 8.14 -40.82 -0.33 2.12 16 33 H 0.11 1.46 7.50 -51.93 -0.39 1.07 16 34 H 0.08 1.18 7.90 -51.93 -0.41 0.77 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 37 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.02 0.34 7.85 -51.93 -0.41 -0.06 16 39 H 0.38 10.26 7.67 -40.82 -0.31 9.95 16 40 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.08 0.83 8.07 -51.93 -0.42 0.41 16 43 H 0.14 0.47 7.94 -52.48 -0.42 0.05 16 44 H 0.15 0.68 8.06 -52.49 -0.42 0.25 16 45 H 0.14 1.48 7.51 -52.49 -0.39 1.09 16 LS Contribution 384.00 15.07 5.79 5.79 Total: -1.00 -34.22 384.00 -8.74 -42.96 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -6.35 Total: 6.20 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -3.42 Total: -8.57 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: 0.11 Total: -53.22 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: 0.08 Total: -7.61 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.08 Total: -2.95 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.22 -8.74 -42.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717394337.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.898 kcal (2) G-P(sol) polarization free energy of solvation -34.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds