Wall clock time and date at job start Tue Mar 31 2020 21:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47037 * 2 1 4 4 C 1.50697 * 109.46969 * 120.00347 * 2 1 3 5 5 O 1.21283 * 120.00521 * 119.72525 * 4 2 1 6 6 N 1.34784 * 119.99774 * 299.99631 * 4 2 1 7 7 C 1.46499 * 119.99893 * 179.72962 * 6 4 2 8 8 C 1.53786 * 113.61109 * 254.13469 * 7 6 4 9 9 C 1.53948 * 87.01916 * 220.05087 * 8 7 6 10 10 C 1.52996 * 113.67119 * 139.93484 * 9 8 7 11 11 N 1.46504 * 109.47481 * 87.43635 * 10 9 8 12 12 C 1.36929 * 120.00124 * 180.02562 * 11 10 9 13 13 H 1.08005 * 120.00342 * 359.97438 * 12 11 10 14 14 C 1.38811 * 119.99775 * 180.02562 * 12 11 10 15 15 N 1.31625 * 120.00348 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00298 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47035 * 59.99531 * 16 14 12 18 18 H 1.48497 * 109.47354 * 180.02562 * 16 14 12 19 19 H 1.48509 * 109.47005 * 300.00400 * 16 14 12 20 20 C 1.53778 * 113.61069 * 156.53341 * 7 6 4 21 21 C 1.50700 * 109.47038 * 239.99584 * 2 1 3 22 22 C 1.38265 * 119.96194 * 119.99983 * 21 2 1 23 23 C 1.38209 * 120.06924 * 179.97438 * 22 21 2 24 24 C 1.38409 * 120.00311 * 0.02562 * 23 22 21 25 25 F 1.35097 * 120.03770 * 180.02562 * 24 23 22 26 26 C 1.38650 * 119.92970 * 0.02562 * 24 23 22 27 27 F 1.35102 * 120.03581 * 180.02562 * 26 24 23 28 28 C 1.38214 * 119.97009 * 299.73033 * 21 2 1 29 29 H 1.09001 * 109.47339 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47277 * 299.99945 * 1 2 3 31 31 H 1.09003 * 109.47126 * 59.99926 * 1 2 3 32 32 H 0.97005 * 119.99846 * 359.72750 * 6 4 2 33 33 H 1.08998 * 112.85336 * 25.32968 * 7 6 4 34 34 H 1.09005 * 113.61382 * 334.57254 * 8 7 6 35 35 H 1.09000 * 113.61125 * 105.47172 * 8 7 6 36 36 H 1.09004 * 113.61509 * 270.80332 * 9 8 7 37 37 H 1.09001 * 109.47724 * 207.44403 * 10 9 8 38 38 H 1.09001 * 109.46722 * 327.44089 * 10 9 8 39 39 H 0.97007 * 119.99390 * 0.02562 * 11 10 9 40 40 H 0.97003 * 119.99993 * 180.02562 * 15 14 12 41 41 H 1.09001 * 113.61193 * 254.52393 * 20 7 6 42 42 H 1.08996 * 113.62218 * 25.42623 * 20 7 6 43 43 H 1.08005 * 119.96189 * 359.97438 * 22 21 2 44 44 H 1.07997 * 119.99796 * 179.97438 * 23 22 21 45 45 H 1.07996 * 119.99278 * 359.97438 * 28 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7254 -1.6995 1.1192 6 7 1.7067 -0.2500 2.4546 7 6 2.1901 -0.9441 3.6507 8 6 1.1024 -1.7563 4.3733 9 6 1.7214 -1.2600 5.6926 10 6 0.6857 -0.8931 6.7573 11 7 0.3380 -2.0867 7.5323 12 6 -0.5767 -2.0013 8.5476 13 1 -1.0417 -1.0540 8.7775 14 6 -0.9057 -3.1322 9.2823 15 7 -0.3380 -4.2865 9.0033 16 14 -2.1531 -3.0158 10.6679 17 1 -3.4543 -2.5497 10.1247 18 1 -2.3266 -4.3523 11.2914 19 1 -1.6697 -2.0524 11.6895 20 6 2.2461 -0.0505 4.9010 21 6 2.0323 -0.7105 -1.2304 22 6 2.8272 -0.0379 -2.1401 23 6 3.2895 -0.6875 -3.2690 24 6 2.9565 -2.0126 -3.4902 25 9 3.4085 -2.6484 -4.5932 26 6 2.1586 -2.6868 -2.5786 27 9 1.8327 -3.9804 -2.7921 28 6 1.7026 -2.0354 -1.4456 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.1523 0.5411 2.5436 33 1 3.1079 -1.5046 3.4730 34 1 0.0922 -1.3859 4.1984 35 1 1.1910 -2.8327 4.2261 36 1 2.5107 -1.9071 6.0753 37 1 1.1010 -0.1361 7.4226 38 1 -0.2088 -0.5005 6.2739 39 1 0.7559 -2.9375 7.3261 40 1 -0.5683 -5.0768 9.5164 41 1 3.2568 0.2483 5.1792 42 1 1.5493 0.7871 4.8707 43 1 3.0870 0.9963 -1.9682 44 1 3.9099 -0.1609 -3.9790 45 1 1.0856 -2.5610 -0.7319 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717394337.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:28 Heat of formation + Delta-G solvation = -99.606942 kcal Electronic energy + Delta-G solvation = -28087.958250 eV Core-core repulsion = 23741.067579 eV Total energy + Delta-G solvation = -4346.890671 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -50.54391 -49.63198 -41.52288 -40.26803 -39.10276 -36.32083 -35.21644 -34.29195 -32.74907 -31.82049 -30.15817 -28.43573 -26.61058 -26.00712 -25.13224 -24.26347 -23.58398 -22.31598 -21.27191 -20.52155 -19.06732 -19.00082 -18.50843 -18.12835 -17.57497 -17.34867 -17.25432 -16.63558 -16.20235 -16.06699 -16.04563 -15.67313 -15.55681 -15.18470 -15.09569 -14.98588 -14.70993 -14.59480 -14.30495 -13.61298 -13.45524 -13.33872 -13.18209 -13.03649 -12.97811 -12.89197 -12.71154 -12.62465 -12.29125 -12.21342 -12.12963 -12.05264 -11.83577 -11.36442 -11.27704 -10.88008 -10.70582 -10.05228 -9.95649 -9.67877 -8.97708 -7.94276 -5.23085 -0.15949 0.02187 1.46941 1.50465 1.56678 1.64471 2.10749 2.49579 2.57094 2.77342 3.25956 3.38540 3.39695 3.57012 3.60811 3.63387 3.82992 3.92022 3.96254 4.00611 4.08369 4.20968 4.32321 4.36144 4.58780 4.66840 4.69895 4.81190 4.83680 4.85056 4.89881 4.92415 4.96657 4.98978 5.03442 5.04404 5.16818 5.26094 5.28232 5.38394 5.44790 5.51505 5.68646 5.73309 6.27935 6.63085 7.31609 7.33530 8.12444 8.33680 9.29278 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021186 B = 0.001855 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.321060 B =15087.852437 C =15700.505081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.061 4.061 3 H 0.156 0.844 4 C 0.511 3.489 5 O -0.582 6.582 6 N -0.701 5.701 7 C 0.132 3.868 8 C -0.141 4.141 9 C -0.117 4.117 10 C 0.164 3.836 11 N -0.748 5.748 12 C -0.245 4.245 13 H 0.078 0.922 14 C -0.081 4.081 15 N -0.972 5.972 16 Si 0.976 3.024 17 H -0.276 1.276 18 H -0.298 1.298 19 H -0.276 1.276 20 C -0.111 4.111 21 C -0.053 4.053 22 C -0.077 4.077 23 C -0.119 4.119 24 C 0.046 3.954 25 F -0.142 7.142 26 C 0.035 3.965 27 F -0.149 7.149 28 C -0.104 4.104 29 H 0.044 0.956 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.419 0.581 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.042 0.958 36 H 0.076 0.924 37 H 0.022 0.978 38 H 0.026 0.974 39 H 0.371 0.629 40 H 0.250 0.750 41 H 0.087 0.913 42 H 0.110 0.890 43 H 0.186 0.814 44 H 0.177 0.823 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.946 18.255 -26.839 32.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.082 4.082 3 H 0.173 0.827 4 C 0.298 3.702 5 O -0.461 6.461 6 N -0.352 5.352 7 C 0.026 3.974 8 C -0.180 4.180 9 C -0.136 4.136 10 C 0.038 3.962 11 N -0.390 5.390 12 C -0.377 4.377 13 H 0.096 0.904 14 C -0.273 4.273 15 N -0.623 5.623 16 Si 0.804 3.196 17 H -0.202 1.202 18 H -0.224 1.224 19 H -0.202 1.202 20 C -0.149 4.149 21 C -0.054 4.054 22 C -0.094 4.094 23 C -0.137 4.137 24 C 0.026 3.974 25 F -0.121 7.121 26 C 0.015 3.985 27 F -0.128 7.128 28 C -0.123 4.123 29 H 0.063 0.937 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.257 0.743 33 H 0.113 0.887 34 H 0.106 0.894 35 H 0.061 0.939 36 H 0.095 0.905 37 H 0.040 0.960 38 H 0.044 0.956 39 H 0.203 0.797 40 H 0.059 0.941 41 H 0.106 0.894 42 H 0.128 0.872 43 H 0.203 0.797 44 H 0.194 0.806 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.317 17.592 -26.862 32.726 hybrid contribution -0.732 -1.663 0.758 1.969 sum 5.585 15.929 -26.104 31.086 Atomic orbital electron populations 1.21885 0.90302 1.02825 1.05184 1.20413 0.98856 1.01600 0.87317 0.82694 1.21117 0.79242 0.84135 0.85679 1.90751 1.40033 1.28025 1.87294 1.45853 1.53200 1.31780 1.04392 1.22281 0.97037 0.94722 0.83345 1.23476 0.99494 0.99447 0.95567 1.22480 0.98021 0.99223 0.93877 1.20796 0.94958 0.88849 0.91580 1.42634 1.50141 1.07866 1.38394 1.19650 1.15296 0.94841 1.07871 0.90374 1.25635 1.03149 0.95439 1.03101 1.69830 1.48245 0.99760 1.44500 0.85177 0.79054 0.76176 0.79150 1.20208 1.22408 1.20216 1.23213 1.03064 0.96482 0.92171 1.19525 0.97289 0.92317 0.96268 1.21443 0.94295 1.02211 0.91494 1.21421 1.01269 0.90695 1.00317 1.18056 1.00637 0.93421 0.85300 1.91489 1.87485 1.82392 1.50729 1.18006 1.02916 0.79641 0.97948 1.91474 1.91412 1.34892 1.94973 1.20910 1.00830 0.95985 0.94562 0.93705 0.89435 0.88971 0.74337 0.88694 0.89430 0.93882 0.90530 0.95961 0.95572 0.79743 0.94111 0.89426 0.87157 0.79715 0.80570 0.85386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 8.90 71.98 0.64 -0.42 16 2 C -0.06 -0.57 2.90 -12.29 -0.04 -0.61 16 3 H 0.16 0.17 7.87 -2.39 -0.02 0.15 16 4 C 0.51 9.36 7.02 87.65 0.62 9.98 16 5 O -0.58 -16.89 14.69 -3.04 -0.04 -16.93 16 6 N -0.70 -10.71 5.25 -440.03 -2.31 -13.02 16 7 C 0.13 2.85 4.21 45.52 0.19 3.05 16 8 C -0.14 -3.97 7.45 31.18 0.23 -3.74 16 9 C -0.12 -3.47 3.75 -10.21 -0.04 -3.51 16 10 C 0.16 6.22 6.10 86.38 0.53 6.75 16 11 N -0.75 -38.23 5.60 -343.45 -1.92 -40.16 16 12 C -0.24 -13.72 9.99 84.03 0.84 -12.88 16 13 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 14 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 15 N -0.97 -60.71 13.06 21.65 0.28 -60.43 16 16 Si 0.98 46.30 29.55 68.60 2.03 48.33 16 17 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 18 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 19 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 20 C -0.11 -2.14 7.39 31.12 0.23 -1.91 16 21 C -0.05 -0.74 4.40 -19.86 -0.09 -0.82 16 22 C -0.08 -0.67 9.67 22.27 0.22 -0.46 16 23 C -0.12 -1.38 10.02 22.30 0.22 -1.16 16 24 C 0.05 0.91 7.31 22.41 0.16 1.07 16 25 F -0.14 -3.19 17.18 44.97 0.77 -2.42 16 26 C 0.03 0.82 7.31 22.41 0.16 0.98 16 27 F -0.15 -4.15 17.18 44.97 0.77 -3.38 16 28 C -0.10 -2.16 7.89 22.31 0.18 -1.98 16 29 H 0.04 0.54 7.40 -2.39 -0.02 0.52 16 30 H 0.09 0.36 7.57 -2.39 -0.02 0.34 16 31 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.42 3.34 8.14 -92.70 -0.75 2.59 16 33 H 0.10 2.47 7.50 -2.39 -0.02 2.45 16 34 H 0.09 2.38 7.90 -2.38 -0.02 2.37 16 35 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 37 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.03 0.96 7.85 -2.39 -0.02 0.94 16 39 H 0.37 20.54 7.67 -92.70 -0.71 19.83 16 40 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 41 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.11 1.64 8.07 -2.39 -0.02 1.62 16 43 H 0.19 -0.01 7.94 -2.91 -0.02 -0.03 16 44 H 0.18 0.94 8.06 -2.91 -0.02 0.91 16 45 H 0.13 2.95 7.51 -2.91 -0.02 2.92 16 Total: -1.00 -79.12 384.00 3.67 -75.45 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: -0.43 Total: 22.49 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: 4.52 Total: -9.93 kcal Atomic # 7 Polarization: -109.65 SS G_CDS: -3.95 Total: -113.61 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -0.04 Total: -16.93 kcal Atomic # 9 Polarization: -7.34 SS G_CDS: 1.55 Total: -5.80 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -79.12 3.67 -75.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717394337.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.156 kcal (2) G-P(sol) polarization free energy of solvation -79.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds