Wall clock time and date at job start Tue Mar 31 2020 21:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47438 * 2 1 4 4 N 1.46505 * 109.47281 * 119.99878 * 2 1 3 5 5 C 1.34778 * 119.99827 * 275.00168 * 4 2 1 6 6 O 1.21276 * 120.00213 * 359.97438 * 5 4 2 7 7 C 1.50703 * 119.99949 * 179.97438 * 5 4 2 8 8 S 1.81001 * 109.47309 * 179.97438 * 7 5 4 9 9 C 1.76193 * 100.00086 * 180.02562 * 8 7 5 10 10 H 1.07998 * 119.99876 * 359.97438 * 9 8 7 11 11 C 1.38794 * 120.00225 * 180.02562 * 9 8 7 12 12 N 1.31630 * 119.99793 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00359 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47171 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47452 * 120.00259 * 13 11 9 16 16 H 1.48502 * 109.47053 * 239.99957 * 13 11 9 17 17 C 1.53000 * 109.47439 * 239.99694 * 2 1 3 18 18 C 1.53512 * 114.16565 * 59.99828 * 17 2 1 19 19 N 1.47477 * 87.92927 * 139.67288 * 18 17 2 20 20 C 1.46904 * 110.99981 * 221.29581 * 19 18 17 21 21 C 1.50700 * 109.47168 * 170.00589 * 20 19 18 22 22 N 1.30502 * 125.64425 * 270.27392 * 21 20 19 23 23 C 1.34127 * 109.25683 * 180.14781 * 22 21 20 24 24 C 1.34672 * 108.01948 * 359.61488 * 23 22 21 25 25 N 1.35041 * 125.65474 * 89.99517 * 21 20 19 26 26 C 1.46499 * 126.39624 * 0.02562 * 25 21 20 27 27 C 1.47472 * 87.83624 * 332.98854 * 19 18 17 28 28 H 1.08996 * 109.47305 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46934 * 300.00197 * 1 2 3 30 30 H 1.08996 * 109.46854 * 59.99902 * 1 2 3 31 31 H 0.96996 * 119.99836 * 94.99834 * 4 2 1 32 32 H 1.08996 * 109.46763 * 300.00175 * 7 5 4 33 33 H 1.09002 * 109.46636 * 59.99890 * 7 5 4 34 34 H 0.96999 * 120.00359 * 180.02562 * 12 11 9 35 35 H 1.08994 * 113.38154 * 286.92611 * 17 2 1 36 36 H 1.09000 * 113.47982 * 24.91102 * 18 17 2 37 37 H 1.08999 * 113.53547 * 254.44768 * 18 17 2 38 38 H 1.08994 * 109.46963 * 50.00219 * 20 19 18 39 39 H 1.09006 * 109.46688 * 290.00014 * 20 19 18 40 40 H 1.08002 * 125.99481 * 179.88589 * 23 22 21 41 41 H 1.07997 * 126.59503 * 180.24939 * 24 23 22 42 42 H 1.09003 * 109.47221 * 270.01947 * 26 25 21 43 43 H 1.09003 * 109.47097 * 30.02049 * 26 25 21 44 44 H 1.09001 * 109.46668 * 150.02021 * 26 25 21 45 45 H 1.09004 * 113.47492 * 141.77718 * 27 19 18 46 46 H 1.08998 * 113.47696 * 272.24030 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3572 6 8 1.8590 1.1586 2.4115 7 6 2.6489 -0.7287 3.5878 8 16 2.7106 0.4346 4.9732 9 6 3.3137 -0.6306 6.2405 10 1 3.5222 -1.6672 6.0207 11 6 3.5198 -0.1377 7.5215 12 7 3.2652 1.1256 7.7895 13 14 4.1599 -1.2668 8.8649 14 1 4.3659 -2.6289 8.3104 15 1 5.4497 -0.7414 9.3804 16 1 3.1724 -1.3279 9.9723 17 6 2.0401 -0.7213 -1.2492 18 6 1.5893 -0.0839 -2.5710 19 7 2.9423 -0.3452 -3.0965 20 6 3.4288 0.7932 -3.8873 21 6 4.8905 0.5999 -4.1994 22 7 5.8862 1.0081 -3.4611 23 6 7.0421 0.6655 -4.0488 24 6 6.7517 0.0130 -5.1905 25 7 5.3868 -0.0289 -5.2865 26 6 4.6097 -0.6411 -6.3670 27 6 3.4347 -0.2733 -1.7083 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.2490 -1.6317 1.1526 32 1 1.9760 -1.5505 3.8326 33 1 3.6480 -1.1212 3.3986 34 1 3.4096 1.4702 8.6846 35 1 1.9097 -1.8026 -1.2078 36 1 1.3548 0.9770 -2.4838 37 1 0.8087 -0.6475 -3.0820 38 1 3.2974 1.7134 -3.3183 39 1 2.8641 0.8571 -4.8175 40 1 8.0323 0.8724 -3.6704 41 1 7.4594 -0.3985 -5.8948 42 1 4.4076 -1.6842 -6.1234 43 1 3.6672 -0.1063 -6.4848 44 1 5.1761 -0.5883 -7.2968 45 1 4.2182 -0.9982 -1.4873 46 1 3.6927 0.7370 -1.3908 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717540909.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:33 Heat of formation + Delta-G solvation = 64.267502 kcal Electronic energy + Delta-G solvation = -26129.991594 eV Core-core repulsion = 22376.340190 eV Total energy + Delta-G solvation = -3753.651405 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.38753 -40.68380 -38.94461 -35.26531 -34.31905 -32.43284 -32.38442 -30.89355 -28.66529 -28.32090 -27.31355 -26.10059 -25.45041 -25.01628 -22.22793 -21.66251 -20.42944 -19.97371 -19.71426 -17.81918 -17.40897 -16.74755 -16.50559 -16.14819 -15.62488 -15.29507 -14.88646 -14.86005 -14.77347 -14.40930 -14.05957 -13.90195 -13.52775 -13.27545 -13.18963 -13.13714 -13.03711 -12.87723 -12.68819 -12.59492 -12.09639 -11.91507 -11.72790 -11.18584 -11.04496 -10.98562 -10.94680 -10.73767 -10.68091 -10.20515 -9.88059 -9.76860 -9.44341 -9.28721 -9.04328 -8.80019 -8.66182 -8.18671 -6.45605 -6.18399 -3.88305 1.70948 2.45705 2.85426 3.06695 3.16193 3.24125 3.30647 3.35391 3.68882 3.71755 4.00947 4.23754 4.24630 4.28673 4.40261 4.46836 4.63451 4.76468 4.93812 4.95035 4.97389 5.04134 5.15022 5.16788 5.20210 5.24475 5.29018 5.32862 5.41335 5.46875 5.59419 5.66049 5.72737 5.79762 5.85600 5.94589 5.97234 6.09351 6.19408 6.24368 6.48484 6.59827 6.73829 6.85534 7.63382 7.78602 7.85363 8.38963 8.68733 9.27093 10.89094 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016200 B = 0.002052 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.973777 B =13641.171627 C =14770.202365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.155 3.845 3 H 0.088 0.912 4 N -0.733 5.733 5 C 0.534 3.466 6 O -0.518 6.518 7 C -0.153 4.153 8 S -0.061 6.061 9 C -0.534 4.534 10 H 0.073 0.927 11 C 0.072 3.928 12 N -0.868 5.868 13 Si 0.919 3.081 14 H -0.272 1.272 15 H -0.280 1.280 16 H -0.280 1.280 17 C -0.122 4.122 18 C 0.011 3.989 19 N -0.472 5.472 20 C 0.103 3.897 21 C 0.212 3.788 22 N -0.482 5.482 23 C -0.026 4.026 24 C -0.060 4.060 25 N -0.452 5.452 26 C 0.075 3.925 27 C 0.015 3.985 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.397 0.603 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.267 0.733 35 H 0.106 0.894 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.170 0.830 41 H 0.174 0.826 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.533 -6.119 -31.712 32.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.049 3.951 3 H 0.106 0.894 4 N -0.387 5.387 5 C 0.320 3.680 6 O -0.392 6.392 7 C -0.304 4.304 8 S 0.166 5.834 9 C -0.682 4.682 10 H 0.091 0.909 11 C -0.137 4.137 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.206 1.206 17 C -0.142 4.142 18 C -0.118 4.118 19 N -0.195 5.195 20 C -0.026 4.026 21 C -0.050 4.050 22 N -0.201 5.201 23 C -0.174 4.174 24 C -0.193 4.193 25 N -0.135 5.135 26 C -0.068 4.068 27 C -0.113 4.113 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.231 0.769 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.077 0.923 35 H 0.124 0.876 36 H 0.095 0.905 37 H 0.108 0.892 38 H 0.094 0.906 39 H 0.107 0.893 40 H 0.187 0.813 41 H 0.191 0.809 42 H 0.098 0.902 43 H 0.104 0.896 44 H 0.102 0.898 45 H 0.102 0.898 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.021 -4.207 -31.331 31.629 hybrid contribution 1.039 -2.310 0.282 2.549 sum 0.018 -6.517 -31.049 31.725 Atomic orbital electron populations 1.22157 0.95210 1.02106 1.02585 1.20836 0.94053 0.97136 0.83026 0.89419 1.46042 1.69346 1.13883 1.09397 1.20285 0.76762 0.87213 0.83763 1.90693 1.48358 1.15739 1.84426 1.23534 1.03665 1.04807 0.98406 1.85387 1.86267 1.12956 0.98800 1.22910 1.50786 0.98164 0.96355 0.90904 1.24995 0.95155 0.95543 0.97975 1.70029 1.45683 1.13190 1.21403 0.86118 0.78513 0.80148 0.80720 1.19631 1.20574 1.20608 1.23026 0.96599 1.01173 0.93393 1.23813 0.92944 1.00788 0.94288 1.69009 1.04532 1.35419 1.10557 1.20946 0.86635 0.94876 1.00181 1.22881 0.96300 0.99522 0.86318 1.70273 0.97910 1.23155 1.28799 1.22328 0.97493 1.03261 0.94346 1.22706 0.83781 1.09470 1.03371 1.45223 1.06596 1.42381 1.19268 1.22018 0.96597 0.99429 0.88752 1.23855 0.97199 1.02429 0.87834 0.92489 0.91606 0.91965 0.76901 0.89306 0.89263 0.92272 0.87587 0.90546 0.89164 0.90568 0.89268 0.81269 0.80920 0.90189 0.89623 0.89839 0.89845 0.90046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.29 37.16 0.35 -1.35 16 2 C 0.16 1.75 2.47 -67.93 -0.17 1.59 16 3 H 0.09 1.20 7.33 -51.93 -0.38 0.82 16 4 N -0.73 -9.72 5.08 -53.80 -0.27 -10.00 16 5 C 0.53 9.99 7.81 -10.98 -0.09 9.90 16 6 O -0.52 -11.75 15.52 5.56 0.09 -11.67 16 7 C -0.15 -3.14 6.16 36.01 0.22 -2.92 16 8 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 9 C -0.53 -15.40 9.50 30.94 0.29 -15.11 16 10 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 11 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 12 N -0.87 -26.46 13.22 55.49 0.73 -25.72 16 13 Si 0.92 21.68 29.55 -169.99 -5.02 16.66 16 14 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 C -0.12 -1.05 3.64 -90.09 -0.33 -1.38 16 18 C 0.01 0.08 6.36 -7.56 -0.05 0.03 16 19 N -0.47 -4.07 6.40 -246.13 -1.58 -5.65 16 20 C 0.10 0.86 5.13 -4.97 -0.03 0.84 16 21 C 0.21 2.23 7.05 -155.42 -1.10 1.13 16 22 N -0.48 -6.23 11.25 -10.81 -0.12 -6.36 16 23 C -0.03 -0.27 11.87 -17.81 -0.21 -0.48 16 24 C -0.06 -0.50 11.58 -16.56 -0.19 -0.69 16 25 N -0.45 -3.75 3.15 -121.27 -0.38 -4.13 16 26 C 0.07 0.31 10.97 59.85 0.66 0.97 16 27 C 0.02 0.16 6.88 -7.56 -0.05 0.11 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.52 7.48 -51.93 -0.39 0.13 16 31 H 0.40 4.20 8.60 -40.82 -0.35 3.85 16 32 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 33 H 0.09 1.71 8.14 -51.91 -0.42 1.28 16 34 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.08 0.52 7.73 -51.93 -0.40 0.11 16 37 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.67 7.56 -51.93 -0.39 0.28 16 39 H 0.09 0.53 7.07 -51.93 -0.37 0.16 16 40 H 0.17 1.45 8.06 -52.49 -0.42 1.03 16 41 H 0.17 0.85 8.06 -52.49 -0.42 0.43 16 42 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.09 0.26 7.05 -51.93 -0.37 -0.10 16 44 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 45 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.08 0.97 7.49 -51.93 -0.39 0.58 16 LS Contribution 396.09 15.07 5.97 5.97 Total: -1.00 -37.45 396.09 -10.81 -48.26 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -7.23 Total: 1.89 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -0.78 Total: -5.37 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: -1.62 Total: -51.86 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.09 Total: -11.67 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.45 -10.81 -48.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717540909.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.530 kcal (2) G-P(sol) polarization free energy of solvation -37.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds