Wall clock time and date at job start Tue Mar 31 2020 20:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 110.88914 * 2 1 4 4 C 1.55132 * 110.90463 * 124.09446 * 2 1 3 5 5 N 1.47426 * 104.72301 * 155.27488 * 4 2 1 6 6 C 1.34779 * 125.64838 * 155.81847 * 5 4 2 7 7 O 1.21272 * 120.00022 * 179.69103 * 6 5 4 8 8 C 1.50701 * 119.99723 * 359.69034 * 6 5 4 9 9 C 1.50703 * 109.46740 * 180.02562 * 8 6 5 10 10 C 1.38255 * 119.96256 * 90.00117 * 9 8 6 11 11 C 1.38215 * 120.06572 * 179.97438 * 10 9 8 12 12 C 1.38405 * 120.00493 * 0.02562 * 11 10 9 13 13 F 1.35100 * 120.04084 * 179.97438 * 12 11 10 14 14 C 1.38655 * 119.92709 * 359.97438 * 12 11 10 15 15 F 1.35103 * 120.03167 * 179.72862 * 14 12 11 16 16 C 1.38211 * 119.96341 * 269.99683 * 9 8 6 17 17 C 1.47022 * 108.70236 * 335.55343 * 5 4 2 18 18 C 1.54328 * 107.26894 * 1.28651 * 17 5 4 19 19 H 1.08997 * 110.71803 * 263.64856 * 18 17 5 20 20 C 1.53001 * 110.71447 * 140.55941 * 18 17 5 21 21 N 1.46495 * 109.47392 * 66.45538 * 20 18 17 22 22 C 1.36938 * 119.99827 * 179.97438 * 21 20 18 23 23 H 1.08002 * 120.00143 * 359.97438 * 22 21 20 24 24 C 1.38815 * 119.99837 * 179.97438 * 22 21 20 25 25 N 1.31614 * 119.99903 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99909 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47184 * 0.02562 * 26 24 22 28 28 H 1.48507 * 109.46813 * 120.00331 * 26 24 22 29 29 H 1.48498 * 109.47237 * 240.00299 * 26 24 22 30 30 H 1.09000 * 109.47512 * 183.87986 * 1 2 3 31 31 H 1.09000 * 109.47463 * 303.88677 * 1 2 3 32 32 H 1.09002 * 109.47033 * 63.87991 * 1 2 3 33 33 H 1.08998 * 110.49605 * 36.43216 * 4 2 1 34 34 H 1.08998 * 110.34135 * 274.04057 * 4 2 1 35 35 H 1.09005 * 109.47360 * 60.00482 * 8 6 5 36 36 H 1.09003 * 109.47383 * 300.00194 * 8 6 5 37 37 H 1.07996 * 119.96614 * 0.02562 * 10 9 8 38 38 H 1.08004 * 119.99579 * 179.97438 * 11 10 9 39 39 H 1.08000 * 120.00028 * 0.03029 * 16 9 8 40 40 H 1.08992 * 109.88163 * 120.70601 * 17 5 4 41 41 H 1.09002 * 109.87908 * 241.71734 * 17 5 4 42 42 H 1.09007 * 109.46660 * 186.45485 * 20 18 17 43 43 H 1.08994 * 109.47038 * 306.44855 * 20 18 17 44 44 H 0.96994 * 120.00276 * 359.97438 * 21 20 18 45 45 H 0.97007 * 119.99986 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0835 -0.8124 1.2001 5 7 3.4271 -1.2434 0.7730 6 6 4.4476 -1.5623 1.5936 7 8 5.5125 -1.9108 1.1297 8 6 4.2652 -1.4857 3.0876 9 6 5.5461 -1.8894 3.7712 10 6 6.4997 -0.9342 4.0708 11 6 7.6750 -1.3020 4.6983 12 6 7.8986 -2.6277 5.0269 13 9 9.0474 -2.9881 5.6398 14 6 6.9422 -3.5856 4.7265 15 9 7.1607 -4.8812 5.0414 16 6 5.7663 -3.2141 4.0981 17 6 3.4674 -1.2739 -0.6964 18 6 2.0861 -0.8075 -1.2024 19 1 1.4478 -1.6627 -1.4245 20 6 2.2350 0.0884 -2.4337 21 7 2.7615 -0.7000 -3.5506 22 6 2.9788 -0.1064 -4.7653 23 1 2.7617 0.9430 -4.9001 24 6 3.4782 -0.8533 -5.8234 25 7 3.7423 -2.1322 -5.6593 26 14 3.7740 -0.0437 -7.4807 27 1 3.3994 1.3913 -7.4044 28 1 5.2101 -0.1616 -7.8398 29 1 2.9482 -0.7170 -8.5150 30 1 -0.3634 -1.0253 0.0695 31 1 -0.3634 0.5730 0.8531 32 1 -0.3633 0.4524 -0.9227 33 1 1.4523 -1.6786 1.3982 34 1 2.1514 -0.1809 2.0860 35 1 3.4633 -2.1589 3.3908 36 1 4.0089 -0.4647 3.3705 37 1 6.3256 0.1005 3.8150 38 1 8.4193 -0.5549 4.9314 39 1 5.0208 -3.9594 3.8632 40 1 4.2426 -0.5995 -1.0600 41 1 3.6677 -2.2886 -1.0407 42 1 1.2619 0.4979 -2.7049 43 1 2.9224 0.9038 -2.2087 44 1 2.9562 -1.6425 -3.4297 45 1 4.0909 -2.6543 -6.3988 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724601174.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:47 Heat of formation + Delta-G solvation = -93.334623 kcal Electronic energy + Delta-G solvation = -28442.008505 eV Core-core repulsion = 24095.389822 eV Total energy + Delta-G solvation = -4346.618683 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.69410 -48.77107 -40.42989 -39.26140 -37.77241 -34.70432 -33.14356 -32.72648 -31.42876 -31.12017 -29.39363 -27.78205 -26.41248 -25.26045 -23.60063 -23.23442 -22.24127 -21.17031 -20.01443 -19.34746 -18.18010 -17.51049 -17.35434 -17.20547 -16.87987 -16.48829 -16.20569 -15.54199 -15.18183 -14.81169 -14.76257 -14.59560 -14.42675 -14.20805 -14.04742 -13.67929 -13.52091 -13.24493 -12.98770 -12.86372 -12.56682 -12.38540 -12.30003 -12.12211 -11.99333 -11.93540 -11.57946 -11.44165 -11.11433 -10.90099 -10.66152 -10.46864 -10.42297 -9.99831 -9.91473 -9.68553 -9.36781 -8.91924 -8.89219 -8.59860 -6.94328 -5.77220 -3.06598 0.57731 0.70053 2.58591 2.79808 3.18969 3.43248 3.48494 3.49966 3.51092 4.01762 4.14512 4.24438 4.38035 4.43475 4.57070 4.63767 4.72524 4.78447 4.88523 4.96104 5.07658 5.26217 5.27900 5.40373 5.44863 5.44992 5.49144 5.56241 5.57988 5.66780 5.67611 5.75525 5.95084 5.98310 6.00657 6.10836 6.16370 6.30139 6.35643 6.38351 6.43552 6.66348 6.79900 7.51477 7.69285 8.13778 8.40991 9.52455 10.09000 10.43161 11.45510 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013527 B = 0.002278 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.391503 B =12289.738712 C =13588.690193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 H 0.087 0.913 4 C 0.102 3.898 5 N -0.618 5.618 6 C 0.524 3.476 7 O -0.529 6.529 8 C -0.099 4.099 9 C -0.045 4.045 10 C -0.085 4.085 11 C -0.123 4.123 12 C 0.065 3.935 13 F -0.131 7.131 14 C 0.069 3.931 15 F -0.129 7.129 16 C -0.111 4.111 17 C 0.116 3.884 18 C -0.100 4.100 19 H 0.086 0.914 20 C 0.165 3.835 21 N -0.733 5.733 22 C -0.241 4.241 23 H 0.071 0.929 24 C -0.013 4.013 25 N -0.931 5.931 26 Si 0.906 3.094 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.291 1.291 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.140 0.860 38 H 0.147 0.853 39 H 0.145 0.855 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.024 0.976 43 H 0.020 0.980 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.516 3.001 26.086 26.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.118 4.118 3 H 0.105 0.895 4 C -0.021 4.021 5 N -0.352 5.352 6 C 0.311 3.689 7 O -0.405 6.405 8 C -0.138 4.138 9 C -0.046 4.046 10 C -0.103 4.103 11 C -0.142 4.142 12 C 0.045 3.955 13 F -0.109 7.109 14 C 0.049 3.951 15 F -0.108 7.108 16 C -0.130 4.130 17 C -0.005 4.005 18 C -0.119 4.119 19 H 0.104 0.896 20 C 0.037 3.963 21 N -0.377 5.377 22 C -0.372 4.372 23 H 0.089 0.911 24 C -0.209 4.209 25 N -0.580 5.580 26 Si 0.738 3.262 27 H -0.206 1.206 28 H -0.218 1.218 29 H -0.219 1.219 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.158 0.842 38 H 0.165 0.835 39 H 0.163 0.837 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.042 0.958 43 H 0.038 0.962 44 H 0.218 0.782 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.796 2.843 25.782 26.001 hybrid contribution 0.509 -0.307 -0.852 1.039 sum -1.287 2.536 24.931 25.092 Atomic orbital electron populations 1.21698 0.93671 1.02096 1.02273 1.22401 0.96224 0.99470 0.93743 0.89459 1.22514 0.83387 0.98312 0.97927 1.48578 1.12016 1.66814 1.07793 1.20014 0.83158 0.77833 0.87857 1.90781 1.25731 1.46589 1.77366 1.20680 0.96241 1.04847 0.92073 1.19193 0.95887 0.92442 0.97028 1.20947 0.92196 1.00301 0.96831 1.21041 0.99161 0.93703 1.00268 1.17699 0.83559 0.93406 1.00884 1.91526 1.46543 1.92404 1.80435 1.17596 0.95725 0.78466 1.03294 1.91534 1.94890 1.33406 1.90949 1.20911 0.96249 0.97072 0.98725 1.22056 0.98405 1.02475 0.77590 1.22525 0.95047 0.99243 0.95133 0.89599 1.20631 0.96661 0.92898 0.86125 1.42364 1.77857 1.09942 1.07564 1.19243 1.35959 0.94148 0.87864 0.91135 1.24752 1.02021 0.95821 0.98319 1.69666 1.50711 1.06079 1.31512 0.86127 0.77520 0.78301 0.84287 1.20565 1.21845 1.21860 0.92394 0.92632 0.91576 0.91112 0.90775 0.87506 0.87337 0.84216 0.83542 0.83739 0.90565 0.91174 0.95818 0.96197 0.78235 0.93510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.31 37.16 0.35 -0.85 16 2 C -0.10 -1.01 3.10 -88.36 -0.27 -1.29 16 3 H 0.09 0.90 8.05 -51.93 -0.42 0.49 16 4 C 0.10 0.88 6.16 -2.41 -0.01 0.87 16 5 N -0.62 -7.73 3.32 -170.38 -0.57 -8.29 16 6 C 0.52 6.76 7.84 -10.98 -0.09 6.68 16 7 O -0.53 -9.41 16.36 5.56 0.09 -9.32 16 8 C -0.10 -0.77 4.83 -29.03 -0.14 -0.91 16 9 C -0.04 -0.41 4.37 -104.62 -0.46 -0.87 16 10 C -0.08 -0.72 9.70 -39.58 -0.38 -1.10 16 11 C -0.12 -1.08 10.02 -39.53 -0.40 -1.48 16 12 C 0.06 0.70 7.31 -39.37 -0.29 0.42 16 13 F -0.13 -1.53 17.18 2.25 0.04 -1.49 16 14 C 0.07 0.78 7.31 -39.36 -0.29 0.50 16 15 F -0.13 -1.59 17.18 2.25 0.04 -1.55 16 16 C -0.11 -1.10 9.68 -39.53 -0.38 -1.48 16 17 C 0.12 1.85 6.15 -3.06 -0.02 1.84 16 18 C -0.10 -1.45 2.48 -88.79 -0.22 -1.67 16 19 H 0.09 1.28 8.04 -51.93 -0.42 0.86 16 20 C 0.16 3.09 5.58 -4.04 -0.02 3.07 16 21 N -0.73 -18.09 5.45 -59.91 -0.33 -18.42 16 22 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 23 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 24 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 25 N -0.93 -28.26 13.06 55.49 0.72 -27.54 16 26 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 29 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 30 H 0.06 0.48 8.07 -51.93 -0.42 0.06 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.54 7.99 -51.93 -0.41 0.12 16 34 H 0.07 0.44 7.48 -51.93 -0.39 0.05 16 35 H 0.11 0.59 8.09 -51.93 -0.42 0.17 16 36 H 0.11 0.55 7.80 -51.93 -0.40 0.15 16 37 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 38 H 0.15 0.94 8.06 -52.48 -0.42 0.51 16 39 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.08 1.41 7.76 -51.93 -0.40 1.01 16 41 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.02 0.39 8.06 -51.93 -0.42 -0.03 16 44 H 0.38 10.04 7.52 -40.82 -0.31 9.73 16 45 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 384.50 15.07 5.79 5.79 Total: -1.00 -34.36 384.50 -8.62 -42.98 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -6.52 Total: 4.01 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -2.87 Total: -3.58 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: -0.17 Total: -54.25 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.09 Total: -9.32 kcal Atomic # 9 Polarization: -3.12 SS G_CDS: 0.08 Total: -3.04 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.36 -8.62 -42.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724601174.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.358 kcal (2) G-P(sol) polarization free energy of solvation -34.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds