Wall clock time and date at job start Tue Mar 31 2020 20:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 110.88914 * 2 1 4 4 C 1.55132 * 110.90463 * 124.09446 * 2 1 3 5 5 N 1.47426 * 104.72301 * 155.27488 * 4 2 1 6 6 C 1.34779 * 125.64838 * 155.81847 * 5 4 2 7 7 O 1.21272 * 120.00022 * 179.69103 * 6 5 4 8 8 C 1.50701 * 119.99723 * 359.69034 * 6 5 4 9 9 C 1.50703 * 109.46740 * 180.02562 * 8 6 5 10 10 C 1.38255 * 119.96256 * 90.00117 * 9 8 6 11 11 C 1.38215 * 120.06572 * 179.97438 * 10 9 8 12 12 C 1.38405 * 120.00493 * 0.02562 * 11 10 9 13 13 F 1.35100 * 120.04084 * 179.97438 * 12 11 10 14 14 C 1.38655 * 119.92709 * 359.97438 * 12 11 10 15 15 F 1.35103 * 120.03167 * 179.72862 * 14 12 11 16 16 C 1.38211 * 119.96341 * 269.99683 * 9 8 6 17 17 C 1.47022 * 108.70236 * 335.55343 * 5 4 2 18 18 C 1.54328 * 107.26894 * 1.28651 * 17 5 4 19 19 H 1.08997 * 110.71803 * 263.64856 * 18 17 5 20 20 C 1.53001 * 110.71447 * 140.55941 * 18 17 5 21 21 N 1.46495 * 109.47392 * 66.45538 * 20 18 17 22 22 C 1.36938 * 119.99827 * 179.97438 * 21 20 18 23 23 H 1.08002 * 120.00143 * 359.97438 * 22 21 20 24 24 C 1.38815 * 119.99837 * 179.97438 * 22 21 20 25 25 N 1.31614 * 119.99903 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99909 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47184 * 0.02562 * 26 24 22 28 28 H 1.48507 * 109.46813 * 120.00331 * 26 24 22 29 29 H 1.48498 * 109.47237 * 240.00299 * 26 24 22 30 30 H 1.09000 * 109.47512 * 183.87986 * 1 2 3 31 31 H 1.09000 * 109.47463 * 303.88677 * 1 2 3 32 32 H 1.09002 * 109.47033 * 63.87991 * 1 2 3 33 33 H 1.08998 * 110.49605 * 36.43216 * 4 2 1 34 34 H 1.08998 * 110.34135 * 274.04057 * 4 2 1 35 35 H 1.09005 * 109.47360 * 60.00482 * 8 6 5 36 36 H 1.09003 * 109.47383 * 300.00194 * 8 6 5 37 37 H 1.07996 * 119.96614 * 0.02562 * 10 9 8 38 38 H 1.08004 * 119.99579 * 179.97438 * 11 10 9 39 39 H 1.08000 * 120.00028 * 0.03029 * 16 9 8 40 40 H 1.08992 * 109.88163 * 120.70601 * 17 5 4 41 41 H 1.09002 * 109.87908 * 241.71734 * 17 5 4 42 42 H 1.09007 * 109.46660 * 186.45485 * 20 18 17 43 43 H 1.08994 * 109.47038 * 306.44855 * 20 18 17 44 44 H 0.96994 * 120.00276 * 359.97438 * 21 20 18 45 45 H 0.97007 * 119.99986 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0835 -0.8124 1.2001 5 7 3.4271 -1.2434 0.7730 6 6 4.4476 -1.5623 1.5936 7 8 5.5125 -1.9108 1.1297 8 6 4.2652 -1.4857 3.0876 9 6 5.5461 -1.8894 3.7712 10 6 6.4997 -0.9342 4.0708 11 6 7.6750 -1.3020 4.6983 12 6 7.8986 -2.6277 5.0269 13 9 9.0474 -2.9881 5.6398 14 6 6.9422 -3.5856 4.7265 15 9 7.1607 -4.8812 5.0414 16 6 5.7663 -3.2141 4.0981 17 6 3.4674 -1.2739 -0.6964 18 6 2.0861 -0.8075 -1.2024 19 1 1.4478 -1.6627 -1.4245 20 6 2.2350 0.0884 -2.4337 21 7 2.7615 -0.7000 -3.5506 22 6 2.9788 -0.1064 -4.7653 23 1 2.7617 0.9430 -4.9001 24 6 3.4782 -0.8533 -5.8234 25 7 3.7423 -2.1322 -5.6593 26 14 3.7740 -0.0437 -7.4807 27 1 3.3994 1.3913 -7.4044 28 1 5.2101 -0.1616 -7.8398 29 1 2.9482 -0.7170 -8.5150 30 1 -0.3634 -1.0253 0.0695 31 1 -0.3634 0.5730 0.8531 32 1 -0.3633 0.4524 -0.9227 33 1 1.4523 -1.6786 1.3982 34 1 2.1514 -0.1809 2.0860 35 1 3.4633 -2.1589 3.3908 36 1 4.0089 -0.4647 3.3705 37 1 6.3256 0.1005 3.8150 38 1 8.4193 -0.5549 4.9314 39 1 5.0208 -3.9594 3.8632 40 1 4.2426 -0.5995 -1.0600 41 1 3.6677 -2.2886 -1.0407 42 1 1.2619 0.4979 -2.7049 43 1 2.9224 0.9038 -2.2087 44 1 2.9562 -1.6425 -3.4297 45 1 4.0909 -2.6543 -6.3988 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724601174.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:46 Heat of formation + Delta-G solvation = -114.592361 kcal Electronic energy + Delta-G solvation = -28442.930310 eV Core-core repulsion = 24095.389822 eV Total energy + Delta-G solvation = -4347.540488 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -50.54929 -49.63629 -41.37650 -40.08041 -38.83514 -36.44508 -34.30649 -33.56885 -33.02176 -31.83700 -30.78822 -28.76069 -27.16485 -26.78019 -24.93693 -24.29963 -23.16278 -22.29214 -21.12303 -20.31665 -19.16867 -18.97272 -18.27841 -18.09280 -17.91609 -17.36698 -17.26749 -16.64767 -16.46836 -16.06586 -15.62329 -15.57759 -15.45665 -15.22435 -15.17009 -14.97347 -14.90475 -14.35200 -14.03627 -13.93499 -13.58164 -13.30947 -13.22242 -13.06329 -12.96204 -12.87024 -12.78151 -12.73588 -12.42697 -12.26903 -12.09374 -11.94973 -11.81093 -11.51784 -11.30053 -10.99590 -10.93767 -10.08786 -9.68869 -9.65543 -9.01085 -7.96341 -5.25295 -0.17779 -0.00582 1.45815 1.47149 1.56987 1.63633 1.91508 2.41419 2.54773 2.76530 3.25418 3.37054 3.43118 3.47455 3.56719 3.60537 3.79554 3.91557 4.00771 4.09243 4.20417 4.31119 4.37538 4.48082 4.54704 4.56713 4.62193 4.71856 4.74654 4.82141 4.85214 4.87957 4.92774 4.97983 5.00755 5.06443 5.21321 5.24033 5.30834 5.31618 5.42394 5.48669 5.59692 5.71461 6.25811 6.58210 7.16797 7.31944 8.08439 8.29824 9.27482 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013527 B = 0.002278 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.391503 B =12289.738712 C =13588.690193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.089 4.089 3 H 0.090 0.910 4 C 0.101 3.899 5 N -0.616 5.616 6 C 0.517 3.483 7 O -0.590 6.590 8 C -0.085 4.085 9 C -0.052 4.052 10 C -0.082 4.082 11 C -0.121 4.121 12 C 0.044 3.956 13 F -0.142 7.142 14 C 0.043 3.957 15 F -0.143 7.143 16 C -0.117 4.117 17 C 0.123 3.877 18 C -0.092 4.092 19 H 0.081 0.919 20 C 0.164 3.836 21 N -0.748 5.748 22 C -0.242 4.242 23 H 0.078 0.922 24 C -0.079 4.079 25 N -0.971 5.971 26 Si 0.973 3.027 27 H -0.263 1.263 28 H -0.297 1.297 29 H -0.292 1.292 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.050 0.950 33 H 0.091 0.909 34 H 0.120 0.880 35 H 0.140 0.860 36 H 0.150 0.850 37 H 0.168 0.832 38 H 0.170 0.830 39 H 0.156 0.844 40 H 0.040 0.960 41 H 0.036 0.964 42 H 0.033 0.967 43 H 0.017 0.983 44 H 0.372 0.628 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.737 5.465 28.111 29.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.108 4.108 3 H 0.109 0.891 4 C -0.020 4.020 5 N -0.349 5.349 6 C 0.308 3.692 7 O -0.470 6.470 8 C -0.124 4.124 9 C -0.053 4.053 10 C -0.100 4.100 11 C -0.140 4.140 12 C 0.024 3.976 13 F -0.121 7.121 14 C 0.023 3.977 15 F -0.122 7.122 16 C -0.135 4.135 17 C 0.000 4.000 18 C -0.111 4.111 19 H 0.100 0.900 20 C 0.037 3.963 21 N -0.390 5.390 22 C -0.374 4.374 23 H 0.096 0.904 24 C -0.271 4.271 25 N -0.622 5.622 26 Si 0.802 3.198 27 H -0.187 1.187 28 H -0.224 1.224 29 H -0.219 1.219 30 H 0.081 0.919 31 H 0.104 0.896 32 H 0.069 0.931 33 H 0.109 0.891 34 H 0.138 0.862 35 H 0.157 0.843 36 H 0.168 0.832 37 H 0.186 0.814 38 H 0.188 0.812 39 H 0.173 0.827 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.051 0.949 43 H 0.035 0.965 44 H 0.204 0.796 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -4.079 5.361 27.858 28.661 hybrid contribution 1.186 -1.018 -1.460 2.139 sum -2.892 4.343 26.397 26.908 Atomic orbital electron populations 1.21683 0.91883 1.02870 1.02886 1.22413 0.97551 0.99058 0.91799 0.89132 1.22839 0.81047 0.99601 0.98470 1.48665 1.13820 1.66509 1.05919 1.21032 0.82048 0.76193 0.89939 1.90761 1.28237 1.49255 1.78791 1.20768 0.96324 1.08146 0.87157 1.19480 0.96909 0.92139 0.96742 1.21361 0.91501 1.01608 0.95543 1.21362 0.99956 0.93150 0.99485 1.18032 0.83382 0.94429 1.01774 1.91488 1.47142 1.92628 1.80792 1.17921 0.96855 0.78139 1.04770 1.91487 1.95082 1.34347 1.91273 1.21141 0.95984 0.98051 0.98352 1.21681 0.98205 0.99520 0.80626 1.22373 0.94425 0.99100 0.95195 0.90020 1.20803 0.96214 0.93062 0.86206 1.42625 1.78067 1.09872 1.08442 1.19681 1.34303 0.94474 0.88959 0.90411 1.25599 1.02924 0.96465 1.02085 1.69832 1.52504 1.07591 1.32270 0.85076 0.76730 0.78189 0.79791 1.18721 1.22421 1.21893 0.91937 0.89589 0.93064 0.89098 0.86162 0.84259 0.83207 0.81426 0.81241 0.82668 0.94166 0.94583 0.94893 0.96505 0.79644 0.94103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.31 71.98 0.67 -1.11 16 2 C -0.09 -1.52 3.10 -9.33 -0.03 -1.55 16 3 H 0.09 1.54 8.05 -2.39 -0.02 1.52 16 4 C 0.10 1.28 6.16 86.93 0.54 1.82 16 5 N -0.62 -14.21 3.32 -811.35 -2.70 -16.90 16 6 C 0.52 12.37 7.84 87.66 0.69 13.06 16 7 O -0.59 -21.25 16.36 -3.00 -0.05 -21.30 16 8 C -0.09 -0.95 4.83 29.10 0.14 -0.81 16 9 C -0.05 -0.83 4.37 -19.87 -0.09 -0.91 16 10 C -0.08 -1.17 9.70 22.27 0.22 -0.95 16 11 C -0.12 -1.94 10.02 22.30 0.22 -1.72 16 12 C 0.04 0.96 7.31 22.41 0.16 1.12 16 13 F -0.14 -3.42 17.18 44.97 0.77 -2.65 16 14 C 0.04 0.99 7.31 22.41 0.16 1.15 16 15 F -0.14 -3.69 17.18 44.97 0.77 -2.92 16 16 C -0.12 -2.21 9.68 22.30 0.22 -1.99 16 17 C 0.12 4.04 6.15 86.73 0.53 4.57 16 18 C -0.09 -2.61 2.48 -9.61 -0.02 -2.64 16 19 H 0.08 2.42 8.04 -2.39 -0.02 2.40 16 20 C 0.16 6.16 5.58 86.38 0.48 6.64 16 21 N -0.75 -37.93 5.45 -343.45 -1.87 -39.80 16 22 C -0.24 -13.60 9.99 84.03 0.84 -12.76 16 23 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 24 C -0.08 -4.59 5.50 84.86 0.47 -4.13 16 25 N -0.97 -60.83 13.06 21.65 0.28 -60.55 16 26 Si 0.97 46.74 29.55 68.60 2.03 48.77 16 27 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 28 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 29 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 30 H 0.06 0.78 8.07 -2.39 -0.02 0.77 16 31 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.09 0.89 7.99 -2.39 -0.02 0.87 16 34 H 0.12 0.54 7.48 -2.39 -0.02 0.52 16 35 H 0.14 0.74 8.09 -2.38 -0.02 0.72 16 36 H 0.15 0.51 7.80 -2.39 -0.02 0.49 16 37 H 0.17 1.40 8.06 -2.91 -0.02 1.37 16 38 H 0.17 1.81 8.06 -2.91 -0.02 1.78 16 39 H 0.16 2.44 8.06 -2.91 -0.02 2.41 16 40 H 0.04 1.58 7.76 -2.39 -0.02 1.56 16 41 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 43 H 0.02 0.65 8.06 -2.39 -0.02 0.64 16 44 H 0.37 20.39 7.52 -92.71 -0.70 19.69 16 45 H 0.25 15.19 8.31 -92.70 -0.77 14.42 16 Total: -1.00 -80.91 384.50 4.75 -76.16 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: 0.31 Total: 19.39 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: 5.20 Total: -0.20 kcal Atomic # 7 Polarization: -112.96 SS G_CDS: -4.29 Total: -117.25 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.05 Total: -21.30 kcal Atomic # 9 Polarization: -7.11 SS G_CDS: 1.55 Total: -5.57 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -80.91 4.75 -76.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724601174.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.432 kcal (2) G-P(sol) polarization free energy of solvation -80.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds