Wall clock time and date at job start Tue Mar 31 2020 20:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 110.38717 * 2 1 4 4 C 1.54397 * 110.34087 * 237.77496 * 2 1 3 5 5 N 1.48151 * 104.61301 * 217.25851 * 4 2 1 6 6 C 1.34775 * 127.83798 * 219.58380 * 5 4 2 7 7 O 1.21275 * 120.00151 * 180.02562 * 6 5 4 8 8 C 1.50702 * 119.99866 * 0.02943 * 6 5 4 9 9 C 1.50696 * 109.47134 * 180.02562 * 8 6 5 10 10 C 1.38258 * 119.96339 * 269.72525 * 9 8 6 11 11 C 1.38213 * 120.07018 * 179.72432 * 10 9 8 12 12 C 1.38417 * 119.99992 * 0.54819 * 11 10 9 13 13 F 1.35093 * 120.03321 * 179.74611 * 12 11 10 14 14 C 1.38646 * 119.92722 * 359.72841 * 12 11 10 15 15 F 1.35097 * 120.03489 * 180.02562 * 14 12 11 16 16 C 1.38210 * 119.96850 * 89.99706 * 9 8 6 17 17 C 1.48144 * 104.32233 * 39.58575 * 5 4 2 18 18 C 1.54277 * 110.34653 * 122.23518 * 2 1 3 19 19 H 1.08996 * 110.34603 * 237.74593 * 18 2 1 20 20 C 1.53004 * 110.34094 * 359.89594 * 18 2 1 21 21 N 1.46509 * 109.47121 * 184.99972 * 20 18 2 22 22 C 1.36935 * 120.00061 * 179.97438 * 21 20 18 23 23 H 1.08001 * 119.99462 * 0.02562 * 22 21 20 24 24 C 1.38809 * 119.99976 * 179.97438 * 22 21 20 25 25 N 1.31614 * 119.99870 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99943 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47391 * 90.00020 * 26 24 22 28 28 H 1.48500 * 109.47463 * 210.00236 * 26 24 22 29 29 H 1.48503 * 109.47282 * 330.00204 * 26 24 22 30 30 H 1.09006 * 109.46640 * 180.77274 * 1 2 3 31 31 H 1.09001 * 109.47083 * 300.76929 * 1 2 3 32 32 H 1.09001 * 109.47528 * 60.77930 * 1 2 3 33 33 H 1.08992 * 110.40719 * 336.04236 * 4 2 1 34 34 H 1.09000 * 110.40697 * 98.47929 * 4 2 1 35 35 H 1.09006 * 109.46686 * 299.99517 * 8 6 5 36 36 H 1.08999 * 109.47428 * 59.99606 * 8 6 5 37 37 H 1.08001 * 119.96146 * 359.97438 * 10 9 8 38 38 H 1.08000 * 119.99885 * 180.27434 * 11 10 9 39 39 H 1.08006 * 120.00263 * 359.97438 * 16 9 8 40 40 H 1.09004 * 110.40486 * 201.62525 * 17 5 4 41 41 H 1.09003 * 110.40712 * 79.19881 * 17 5 4 42 42 H 1.08996 * 109.47137 * 304.99706 * 20 18 2 43 43 H 1.08997 * 109.47114 * 65.00192 * 20 18 2 44 44 H 0.96997 * 119.99691 * 0.02562 * 21 20 18 45 45 H 0.97003 * 119.99461 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9097 1.0217 0.0000 4 6 2.0667 -0.7720 -1.2247 5 7 3.2665 -1.4816 -0.7228 6 6 4.4425 -1.6662 -1.3548 7 8 5.3366 -2.2749 -0.8063 8 6 4.6464 -1.1162 -2.7429 9 6 6.0347 -1.4575 -3.2195 10 6 7.0815 -0.5876 -2.9768 11 6 8.3567 -0.9011 -3.4080 12 6 8.5848 -2.0818 -4.0935 13 9 9.8300 -2.3864 -4.5197 14 6 7.5339 -2.9515 -4.3419 15 9 7.7542 -4.1046 -5.0103 16 6 6.2592 -2.6372 -3.9038 17 6 2.8802 -1.9422 0.6312 18 6 2.0664 -0.7716 1.2236 19 1 2.7095 -0.1289 1.8247 20 6 0.9062 -1.3014 2.0687 21 7 1.4332 -1.9260 3.2847 22 6 0.5749 -2.4742 4.2000 23 1 -0.4905 -2.4465 4.0252 24 6 1.0742 -3.0664 5.3519 25 7 2.3726 -3.1005 5.5645 26 14 -0.0966 -3.8149 6.6001 27 1 -0.3303 -5.2428 6.2656 28 1 0.4971 -3.7153 7.9576 29 1 -1.3877 -3.0818 6.5696 30 1 -0.3633 -1.0277 0.0139 31 1 -0.3633 0.5257 0.8830 32 1 -0.3634 0.5017 -0.8969 33 1 1.3235 -1.4859 -1.5795 34 1 2.3401 -0.0793 -2.0207 35 1 3.9125 -1.5550 -3.4190 36 1 4.5235 -0.0333 -2.7264 37 1 6.9032 0.3361 -2.4462 38 1 9.1743 -0.2227 -3.2139 39 1 5.4399 -3.3142 -4.0963 40 1 3.7673 -2.1325 1.2353 41 1 2.2640 -2.8390 0.5662 42 1 0.2479 -0.4762 2.3401 43 1 0.3460 -2.0395 1.4947 44 1 2.3901 -1.9504 3.4417 45 1 2.7215 -3.5147 6.3693 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724601176.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:54 Heat of formation + Delta-G solvation = -86.121847 kcal Electronic energy + Delta-G solvation = -28501.247783 eV Core-core repulsion = 24154.941869 eV Total energy + Delta-G solvation = -4346.305914 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.70643 -48.78335 -40.41964 -39.31166 -37.88125 -34.68615 -33.14766 -32.75624 -31.19946 -31.12561 -29.34815 -27.82992 -26.39224 -25.09295 -23.62333 -23.38346 -22.25357 -22.00183 -19.42160 -18.91991 -18.18430 -17.51127 -17.40984 -17.22659 -16.79878 -16.52331 -15.94828 -15.62474 -15.19564 -15.18627 -14.79802 -14.67033 -14.56019 -14.22565 -13.96776 -13.74564 -13.56432 -13.32610 -12.97763 -12.55232 -12.35259 -12.30869 -12.21649 -12.11053 -11.93655 -11.87856 -11.74604 -11.58688 -11.00052 -10.86619 -10.53744 -10.48381 -10.22038 -9.98523 -9.91152 -9.69269 -9.37838 -8.92694 -8.87475 -8.71046 -6.93070 -5.76741 -3.06084 0.56597 0.68956 2.56683 2.77028 3.16947 3.43173 3.47955 3.48783 3.50068 4.00609 4.13401 4.23542 4.38657 4.54223 4.59608 4.62645 4.71411 4.78903 4.90449 4.96561 5.07343 5.25823 5.35253 5.38918 5.44026 5.47998 5.54495 5.56456 5.59139 5.66619 5.73572 5.77997 5.90759 5.97891 6.05044 6.10251 6.13177 6.29119 6.38343 6.41771 6.47918 6.71271 6.81720 7.55248 7.68679 8.11442 8.41637 9.52748 10.10274 10.44101 11.45917 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015897 B = 0.002184 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.885787 B =12815.646266 C =13871.764514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 H 0.078 0.922 4 C 0.103 3.897 5 N -0.624 5.624 6 C 0.531 3.469 7 O -0.531 6.531 8 C -0.099 4.099 9 C -0.045 4.045 10 C -0.085 4.085 11 C -0.123 4.123 12 C 0.065 3.935 13 F -0.130 7.130 14 C 0.069 3.931 15 F -0.129 7.129 16 C -0.111 4.111 17 C 0.116 3.884 18 C -0.105 4.105 19 H 0.080 0.920 20 C 0.162 3.838 21 N -0.734 5.734 22 C -0.241 4.241 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.931 5.931 26 Si 0.906 3.094 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.140 0.860 38 H 0.147 0.853 39 H 0.145 0.855 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.027 0.973 43 H 0.023 0.977 44 H 0.383 0.617 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.854 9.297 -24.027 26.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 H 0.096 0.904 4 C -0.020 4.020 5 N -0.358 5.358 6 C 0.319 3.681 7 O -0.407 6.407 8 C -0.139 4.139 9 C -0.045 4.045 10 C -0.103 4.103 11 C -0.141 4.141 12 C 0.044 3.956 13 F -0.109 7.109 14 C 0.049 3.951 15 F -0.108 7.108 16 C -0.130 4.130 17 C -0.006 4.006 18 C -0.125 4.125 19 H 0.099 0.901 20 C 0.035 3.965 21 N -0.379 5.379 22 C -0.372 4.372 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.580 5.580 26 Si 0.737 3.263 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.158 0.842 38 H 0.165 0.835 39 H 0.163 0.837 40 H 0.103 0.897 41 H 0.095 0.905 42 H 0.044 0.956 43 H 0.040 0.960 44 H 0.217 0.783 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.359 8.827 -23.741 25.890 hybrid contribution -0.053 -0.763 0.678 1.022 sum 5.306 8.064 -23.063 25.002 Atomic orbital electron populations 1.21900 0.93883 1.02849 1.01749 1.22056 0.96579 0.99140 0.94033 0.90360 1.22565 0.87006 0.95513 0.96939 1.49072 1.12625 1.55703 1.18413 1.19955 0.80790 0.80318 0.87039 1.90778 1.41075 1.41392 1.67429 1.20669 0.94693 1.03624 0.94864 1.19187 0.95074 0.93720 0.96554 1.20952 0.91075 1.00106 0.98155 1.21046 0.98877 0.95490 0.98731 1.17700 0.79434 0.96165 1.02252 1.91524 1.38228 1.93155 1.87993 1.17592 0.93781 0.84125 0.99576 1.91532 1.95354 1.46046 1.77850 1.20911 0.95252 0.97746 0.99076 1.22452 0.99663 0.97034 0.81436 1.22334 0.98163 0.96312 0.95683 0.90119 1.20849 0.92885 0.95095 0.87708 1.42422 1.06736 1.69025 1.19681 1.19191 0.89848 1.29596 0.98607 0.91200 1.24751 0.95832 1.01725 0.98624 1.69660 1.10564 1.49766 1.27991 0.86204 0.79847 0.79156 0.81045 1.21724 1.21782 1.20785 0.91635 0.91456 0.93093 0.90669 0.90591 0.87499 0.87311 0.84205 0.83529 0.83743 0.89735 0.90472 0.95557 0.95968 0.78309 0.93462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 7.91 37.16 0.29 -1.12 16 2 C -0.10 -1.02 3.66 -89.22 -0.33 -1.34 16 3 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 4 C 0.10 0.91 6.46 -2.40 -0.02 0.89 16 5 N -0.62 -7.70 3.32 -169.30 -0.56 -8.26 16 6 C 0.53 6.75 7.91 -10.99 -0.09 6.66 16 7 O -0.53 -9.26 16.30 5.56 0.09 -9.17 16 8 C -0.10 -0.76 4.81 -29.04 -0.14 -0.90 16 9 C -0.04 -0.41 4.37 -104.63 -0.46 -0.86 16 10 C -0.08 -0.71 9.70 -39.58 -0.38 -1.09 16 11 C -0.12 -1.06 10.02 -39.52 -0.40 -1.46 16 12 C 0.06 0.69 7.31 -39.36 -0.29 0.41 16 13 F -0.13 -1.51 17.18 2.25 0.04 -1.47 16 14 C 0.07 0.77 7.31 -39.37 -0.29 0.49 16 15 F -0.13 -1.57 17.18 2.25 0.04 -1.53 16 16 C -0.11 -1.09 9.68 -39.53 -0.38 -1.47 16 17 C 0.12 1.81 6.41 -2.41 -0.02 1.79 16 18 C -0.11 -1.55 3.09 -89.22 -0.28 -1.83 16 19 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 20 C 0.16 2.98 4.40 -4.03 -0.02 2.96 16 21 N -0.73 -18.00 5.48 -59.90 -0.33 -18.32 16 22 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 23 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 24 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 25 N -0.93 -28.23 13.06 55.49 0.72 -27.50 16 26 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 29 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 30 H 0.06 0.69 6.76 -51.93 -0.35 0.34 16 31 H 0.07 0.72 6.86 -51.93 -0.36 0.36 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.62 7.86 -51.93 -0.41 0.21 16 34 H 0.08 0.44 7.30 -51.93 -0.38 0.06 16 35 H 0.11 0.58 8.08 -51.93 -0.42 0.16 16 36 H 0.11 0.55 7.89 -51.93 -0.41 0.14 16 37 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 38 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 39 H 0.14 1.19 8.06 -52.48 -0.42 0.76 16 40 H 0.08 1.55 7.88 -51.93 -0.41 1.14 16 41 H 0.08 1.28 7.76 -51.93 -0.40 0.88 16 42 H 0.03 0.49 6.57 -51.93 -0.34 0.15 16 43 H 0.02 0.41 6.87 -51.93 -0.36 0.06 16 44 H 0.38 10.04 7.61 -40.82 -0.31 9.73 16 45 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 378.10 15.07 5.70 5.70 Total: -1.00 -34.04 378.10 -8.58 -42.61 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -6.23 Total: 4.81 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -3.03 Total: -4.12 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: -0.17 Total: -54.09 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.09 Total: -9.17 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.08 Total: -3.01 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.04 -8.58 -42.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724601176.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.507 kcal (2) G-P(sol) polarization free energy of solvation -34.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds