Wall clock time and date at job start Tue Mar 31 2020 20:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 110.38717 * 2 1 4 4 C 1.54397 * 110.34087 * 237.77496 * 2 1 3 5 5 N 1.48151 * 104.61301 * 217.25851 * 4 2 1 6 6 C 1.34775 * 127.83798 * 219.58380 * 5 4 2 7 7 O 1.21275 * 120.00151 * 180.02562 * 6 5 4 8 8 C 1.50702 * 119.99866 * 0.02943 * 6 5 4 9 9 C 1.50696 * 109.47134 * 180.02562 * 8 6 5 10 10 C 1.38258 * 119.96339 * 269.72525 * 9 8 6 11 11 C 1.38213 * 120.07018 * 179.72432 * 10 9 8 12 12 C 1.38417 * 119.99992 * 0.54819 * 11 10 9 13 13 F 1.35093 * 120.03321 * 179.74611 * 12 11 10 14 14 C 1.38646 * 119.92722 * 359.72841 * 12 11 10 15 15 F 1.35097 * 120.03489 * 180.02562 * 14 12 11 16 16 C 1.38210 * 119.96850 * 89.99706 * 9 8 6 17 17 C 1.48144 * 104.32233 * 39.58575 * 5 4 2 18 18 C 1.54277 * 110.34653 * 122.23518 * 2 1 3 19 19 H 1.08996 * 110.34603 * 237.74593 * 18 2 1 20 20 C 1.53004 * 110.34094 * 359.89594 * 18 2 1 21 21 N 1.46509 * 109.47121 * 184.99972 * 20 18 2 22 22 C 1.36935 * 120.00061 * 179.97438 * 21 20 18 23 23 H 1.08001 * 119.99462 * 0.02562 * 22 21 20 24 24 C 1.38809 * 119.99976 * 179.97438 * 22 21 20 25 25 N 1.31614 * 119.99870 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99943 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47391 * 90.00020 * 26 24 22 28 28 H 1.48500 * 109.47463 * 210.00236 * 26 24 22 29 29 H 1.48503 * 109.47282 * 330.00204 * 26 24 22 30 30 H 1.09006 * 109.46640 * 180.77274 * 1 2 3 31 31 H 1.09001 * 109.47083 * 300.76929 * 1 2 3 32 32 H 1.09001 * 109.47528 * 60.77930 * 1 2 3 33 33 H 1.08992 * 110.40719 * 336.04236 * 4 2 1 34 34 H 1.09000 * 110.40697 * 98.47929 * 4 2 1 35 35 H 1.09006 * 109.46686 * 299.99517 * 8 6 5 36 36 H 1.08999 * 109.47428 * 59.99606 * 8 6 5 37 37 H 1.08001 * 119.96146 * 359.97438 * 10 9 8 38 38 H 1.08000 * 119.99885 * 180.27434 * 11 10 9 39 39 H 1.08006 * 120.00263 * 359.97438 * 16 9 8 40 40 H 1.09004 * 110.40486 * 201.62525 * 17 5 4 41 41 H 1.09003 * 110.40712 * 79.19881 * 17 5 4 42 42 H 1.08996 * 109.47137 * 304.99706 * 20 18 2 43 43 H 1.08997 * 109.47114 * 65.00192 * 20 18 2 44 44 H 0.96997 * 119.99691 * 0.02562 * 21 20 18 45 45 H 0.97003 * 119.99461 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9097 1.0217 0.0000 4 6 2.0667 -0.7720 -1.2247 5 7 3.2665 -1.4816 -0.7228 6 6 4.4425 -1.6662 -1.3548 7 8 5.3366 -2.2749 -0.8063 8 6 4.6464 -1.1162 -2.7429 9 6 6.0347 -1.4575 -3.2195 10 6 7.0815 -0.5876 -2.9768 11 6 8.3567 -0.9011 -3.4080 12 6 8.5848 -2.0818 -4.0935 13 9 9.8300 -2.3864 -4.5197 14 6 7.5339 -2.9515 -4.3419 15 9 7.7542 -4.1046 -5.0103 16 6 6.2592 -2.6372 -3.9038 17 6 2.8802 -1.9422 0.6312 18 6 2.0664 -0.7716 1.2236 19 1 2.7095 -0.1289 1.8247 20 6 0.9062 -1.3014 2.0687 21 7 1.4332 -1.9260 3.2847 22 6 0.5749 -2.4742 4.2000 23 1 -0.4905 -2.4465 4.0252 24 6 1.0742 -3.0664 5.3519 25 7 2.3726 -3.1005 5.5645 26 14 -0.0966 -3.8149 6.6001 27 1 -0.3303 -5.2428 6.2656 28 1 0.4971 -3.7153 7.9576 29 1 -1.3877 -3.0818 6.5696 30 1 -0.3633 -1.0277 0.0139 31 1 -0.3633 0.5257 0.8830 32 1 -0.3634 0.5017 -0.8969 33 1 1.3235 -1.4859 -1.5795 34 1 2.3401 -0.0793 -2.0207 35 1 3.9125 -1.5550 -3.4190 36 1 4.5235 -0.0333 -2.7264 37 1 6.9032 0.3361 -2.4462 38 1 9.1743 -0.2227 -3.2139 39 1 5.4399 -3.3142 -4.0963 40 1 3.7673 -2.1325 1.2353 41 1 2.2640 -2.8390 0.5662 42 1 0.2479 -0.4762 2.3401 43 1 0.3460 -2.0395 1.4947 44 1 2.3901 -1.9504 3.4417 45 1 2.7215 -3.5147 6.3693 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724601176.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:53 Heat of formation + Delta-G solvation = -107.215154 kcal Electronic energy + Delta-G solvation = -28502.162458 eV Core-core repulsion = 24154.941869 eV Total energy + Delta-G solvation = -4347.220588 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -50.54894 -49.63585 -41.35662 -40.13369 -38.92021 -36.38101 -34.37050 -33.59470 -32.80536 -31.83417 -30.66246 -28.81187 -27.20802 -26.62850 -24.83450 -24.29367 -23.58834 -22.88128 -20.35266 -20.14932 -19.05505 -18.88368 -18.27325 -18.19388 -17.92804 -17.37576 -17.09081 -16.56516 -16.45475 -16.14814 -16.06309 -15.58656 -15.43682 -15.29919 -15.13525 -14.97589 -14.76747 -14.50724 -14.02250 -13.79434 -13.50140 -13.18646 -13.07792 -13.03681 -12.89244 -12.80123 -12.76140 -12.74740 -12.66491 -12.26943 -12.15656 -11.81428 -11.64418 -11.46038 -11.23004 -10.96410 -10.86779 -10.08564 -9.74703 -9.68230 -8.97287 -7.94268 -5.22972 -0.17652 -0.00399 1.46891 1.48834 1.57182 1.63673 1.89516 2.41224 2.56482 2.76593 3.25587 3.39293 3.43642 3.50351 3.60380 3.66197 3.87980 3.91976 4.01002 4.09525 4.21235 4.30199 4.37175 4.48922 4.53855 4.59267 4.65151 4.72234 4.74815 4.82683 4.85372 4.87956 4.91264 4.97360 5.01031 5.03166 5.24686 5.26328 5.31387 5.31997 5.47702 5.52060 5.63415 5.71668 6.27973 6.63411 7.16217 7.33616 8.11642 8.32166 9.29564 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015897 B = 0.002184 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.885787 B =12815.646266 C =13871.764514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.089 4.089 3 H 0.099 0.901 4 C 0.103 3.897 5 N -0.622 5.622 6 C 0.525 3.475 7 O -0.590 6.590 8 C -0.086 4.086 9 C -0.052 4.052 10 C -0.082 4.082 11 C -0.121 4.121 12 C 0.044 3.956 13 F -0.142 7.142 14 C 0.043 3.957 15 F -0.143 7.143 16 C -0.117 4.117 17 C 0.120 3.880 18 C -0.098 4.098 19 H 0.063 0.937 20 C 0.163 3.837 21 N -0.750 5.750 22 C -0.240 4.240 23 H 0.080 0.920 24 C -0.080 4.080 25 N -0.973 5.973 26 Si 0.973 3.027 27 H -0.289 1.289 28 H -0.298 1.298 29 H -0.265 1.265 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.125 0.875 35 H 0.140 0.860 36 H 0.150 0.850 37 H 0.168 0.832 38 H 0.170 0.830 39 H 0.156 0.844 40 H 0.042 0.958 41 H 0.060 0.940 42 H 0.035 0.965 43 H 0.028 0.972 44 H 0.370 0.630 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.677 11.713 -26.131 28.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.108 4.108 3 H 0.117 0.883 4 C -0.018 4.018 5 N -0.355 5.355 6 C 0.315 3.685 7 O -0.471 6.471 8 C -0.124 4.124 9 C -0.052 4.052 10 C -0.100 4.100 11 C -0.140 4.140 12 C 0.024 3.976 13 F -0.121 7.121 14 C 0.023 3.977 15 F -0.122 7.122 16 C -0.135 4.135 17 C -0.004 4.004 18 C -0.118 4.118 19 H 0.082 0.918 20 C 0.037 3.963 21 N -0.392 5.392 22 C -0.372 4.372 23 H 0.098 0.902 24 C -0.272 4.272 25 N -0.624 5.624 26 Si 0.802 3.198 27 H -0.216 1.216 28 H -0.225 1.225 29 H -0.190 1.190 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.143 0.857 35 H 0.157 0.843 36 H 0.167 0.833 37 H 0.186 0.814 38 H 0.187 0.813 39 H 0.174 0.826 40 H 0.061 0.939 41 H 0.078 0.922 42 H 0.052 0.948 43 H 0.046 0.954 44 H 0.201 0.799 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.113 11.285 -25.908 28.430 hybrid contribution 0.594 -1.477 1.303 2.057 sum 3.707 9.807 -24.605 26.746 Atomic orbital electron populations 1.21876 0.93087 1.02364 1.02855 1.22078 0.97128 0.99622 0.92012 0.88296 1.22855 0.85606 0.96183 0.97148 1.49147 1.13887 1.55550 1.16886 1.20957 0.79747 0.79231 0.88516 1.90761 1.43034 1.44073 1.69197 1.20756 0.94425 1.05943 0.91310 1.19471 0.96304 0.93406 0.96063 1.21361 0.90550 1.00909 0.97201 1.21365 1.00045 0.94878 0.97668 1.18032 0.79019 0.97212 1.03362 1.91487 1.38893 1.93376 1.88300 1.17914 0.94808 0.84185 1.00748 1.91485 1.95516 1.46853 1.78326 1.21141 0.94965 0.98407 0.99006 1.22104 0.97705 0.97085 0.83490 1.22185 0.96523 0.96078 0.97008 0.91833 1.21039 0.94342 0.94898 0.86040 1.42712 1.05913 1.69331 1.21284 1.19656 0.90658 1.28110 0.98783 0.90238 1.25600 0.97322 1.03288 1.01016 1.69836 1.12529 1.51584 1.28443 0.85143 0.78374 0.78237 0.78043 1.21615 1.22482 1.18991 0.92816 0.92794 0.89667 0.89508 0.85682 0.84256 0.83257 0.81448 0.81266 0.82632 0.93941 0.92172 0.94759 0.95405 0.79915 0.94179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 7.91 71.98 0.57 -1.69 16 2 C -0.09 -1.52 3.66 -9.89 -0.04 -1.55 16 3 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 4 C 0.10 1.33 6.46 86.54 0.56 1.89 16 5 N -0.62 -14.05 3.32 -807.95 -2.68 -16.72 16 6 C 0.52 12.27 7.91 87.66 0.69 12.96 16 7 O -0.59 -20.80 16.30 -3.02 -0.05 -20.85 16 8 C -0.09 -0.93 4.81 29.10 0.14 -0.79 16 9 C -0.05 -0.80 4.37 -19.87 -0.09 -0.89 16 10 C -0.08 -1.15 9.70 22.27 0.22 -0.93 16 11 C -0.12 -1.92 10.02 22.31 0.22 -1.69 16 12 C 0.04 0.94 7.31 22.41 0.16 1.11 16 13 F -0.14 -3.39 17.18 44.97 0.77 -2.62 16 14 C 0.04 0.98 7.31 22.41 0.16 1.14 16 15 F -0.14 -3.63 17.18 44.97 0.77 -2.86 16 16 C -0.12 -2.16 9.68 22.30 0.22 -1.94 16 17 C 0.12 3.82 6.41 86.53 0.55 4.37 16 18 C -0.10 -2.84 3.09 -9.89 -0.03 -2.87 16 19 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 20 C 0.16 5.95 4.40 86.38 0.38 6.33 16 21 N -0.75 -37.68 5.48 -343.44 -1.88 -39.56 16 22 C -0.24 -13.31 9.99 84.03 0.84 -12.47 16 23 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 24 C -0.08 -4.66 5.50 84.86 0.47 -4.20 16 25 N -0.97 -60.95 13.06 21.65 0.28 -60.67 16 26 Si 0.97 46.41 29.55 68.60 2.03 48.43 16 27 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 28 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 29 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 30 H 0.05 0.98 6.76 -2.38 -0.02 0.96 16 31 H 0.05 1.00 6.86 -2.39 -0.02 0.99 16 32 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.09 1.00 7.86 -2.39 -0.02 0.98 16 34 H 0.13 0.50 7.30 -2.39 -0.02 0.49 16 35 H 0.14 0.70 8.08 -2.38 -0.02 0.68 16 36 H 0.15 0.49 7.89 -2.39 -0.02 0.47 16 37 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 38 H 0.17 1.78 8.06 -2.91 -0.02 1.75 16 39 H 0.16 2.37 8.06 -2.91 -0.02 2.34 16 40 H 0.04 1.68 7.88 -2.39 -0.02 1.66 16 41 H 0.06 2.08 7.76 -2.39 -0.02 2.07 16 42 H 0.03 1.23 6.57 -2.39 -0.02 1.21 16 43 H 0.03 1.01 6.87 -2.39 -0.02 0.99 16 44 H 0.37 20.32 7.61 -92.71 -0.71 19.62 16 45 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -80.03 378.10 4.59 -75.44 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: 0.32 Total: 20.64 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: 5.03 Total: -1.23 kcal Atomic # 7 Polarization: -112.68 SS G_CDS: -4.28 Total: -116.96 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.05 Total: -20.85 kcal Atomic # 9 Polarization: -7.02 SS G_CDS: 1.55 Total: -5.47 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.43 kcal Total: -80.03 4.59 -75.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724601176.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.777 kcal (2) G-P(sol) polarization free energy of solvation -80.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds