Wall clock time and date at job start Tue Mar 31 2020 21:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08992 * 110.38818 * 2 1 4 4 C 1.54389 * 110.33644 * 122.22544 * 2 1 3 5 5 N 1.48154 * 104.61471 * 142.74020 * 4 2 1 6 6 C 1.34771 * 127.83692 * 140.39518 * 5 4 2 7 7 O 1.21289 * 119.99574 * 179.97438 * 6 5 4 8 8 C 1.50699 * 120.00469 * 359.97025 * 6 5 4 9 9 S 1.80992 * 109.47393 * 180.02562 * 8 6 5 10 10 C 1.76203 * 100.00112 * 180.02562 * 9 8 6 11 11 H 1.07997 * 119.99837 * 0.02562 * 10 9 8 12 12 C 1.38798 * 119.99903 * 179.97438 * 10 9 8 13 13 N 1.31637 * 119.99794 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 120.00142 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47359 * 90.00105 * 14 12 10 16 16 H 1.48507 * 109.47000 * 209.99606 * 14 12 10 17 17 H 1.48499 * 109.46990 * 329.99640 * 14 12 10 18 18 C 1.48144 * 104.32110 * 320.41346 * 5 4 2 19 19 C 1.54281 * 110.34387 * 237.76165 * 2 1 3 20 20 H 1.09002 * 110.34302 * 0.02562 * 19 2 1 21 21 N 1.46899 * 110.33900 * 122.15764 * 19 2 1 22 22 C 1.46901 * 111.00033 * 203.52564 * 21 19 2 23 23 C 1.53003 * 109.47531 * 179.97438 * 22 21 19 24 24 N 1.46497 * 109.47181 * 180.02562 * 23 22 21 25 25 C 1.34941 * 126.03885 * 125.00384 * 24 23 22 26 26 C 1.35318 * 107.74715 * 179.97438 * 25 24 23 27 27 C 1.39865 * 107.92125 * 359.97438 * 26 25 24 28 28 N 1.30833 * 108.20027 * 359.74573 * 27 26 25 29 29 H 1.08996 * 109.47126 * 182.23275 * 1 2 3 30 30 H 1.08995 * 109.47333 * 302.23933 * 1 2 3 31 31 H 1.09000 * 109.46800 * 62.23733 * 1 2 3 32 32 H 1.09000 * 110.41208 * 261.51871 * 4 2 1 33 33 H 1.08996 * 110.40912 * 23.84298 * 4 2 1 34 34 H 1.08996 * 109.47078 * 300.00470 * 8 6 5 35 35 H 1.09009 * 109.46868 * 60.00303 * 8 6 5 36 36 H 0.97002 * 120.00094 * 180.02562 * 13 12 10 37 37 H 1.08999 * 110.40697 * 280.80114 * 18 5 4 38 38 H 1.08998 * 110.40769 * 158.37404 * 18 5 4 39 39 H 1.00900 * 111.00208 * 79.57211 * 21 19 2 40 40 H 1.09000 * 109.47021 * 300.00224 * 22 21 19 41 41 H 1.09004 * 109.47384 * 59.99885 * 22 21 19 42 42 H 1.08999 * 109.46498 * 300.00452 * 23 22 21 43 43 H 1.08995 * 109.46814 * 59.99826 * 23 22 21 44 44 H 1.08005 * 126.12363 * 359.97438 * 25 24 23 45 45 H 1.08003 * 126.04040 * 179.97438 * 26 25 24 46 46 H 1.08003 * 125.90094 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9098 1.0216 0.0000 4 6 2.0666 -0.7720 1.2247 5 7 3.2664 -1.4817 0.7229 6 6 4.4424 -1.6660 1.3548 7 8 5.3366 -2.2749 0.8063 8 6 4.6466 -1.1156 2.7427 9 16 6.3146 -1.5240 3.3145 10 6 6.2802 -0.7831 4.9127 11 1 5.3911 -0.2727 5.2523 12 6 7.3955 -0.8563 5.7357 13 7 7.3699 -0.3022 6.9296 14 14 8.9331 -1.7396 5.1487 15 1 9.8207 -0.7765 4.4490 16 1 9.6493 -2.3151 6.3155 17 1 8.5517 -2.8297 4.2151 18 6 2.8802 -1.9423 -0.6311 19 6 2.0664 -0.7717 -1.2236 20 1 1.2399 -1.1503 -1.8249 21 7 2.9313 0.0952 -2.0350 22 6 2.9985 -0.3794 -3.4235 23 6 3.9058 0.5469 -4.2359 24 7 3.9722 0.0738 -5.6208 25 6 3.6868 0.7994 -6.7222 26 6 3.8708 0.0025 -7.8002 27 6 4.2834 -1.2529 -7.3420 28 7 4.3501 -1.2096 -6.0361 29 1 -0.3633 -1.0268 0.0400 30 1 -0.3634 0.5482 0.8692 31 1 -0.3633 0.4787 -0.9094 32 1 2.3400 -0.0794 2.0207 33 1 1.3226 -1.4845 1.5807 34 1 4.5237 -0.0328 2.7259 35 1 3.9128 -1.5542 3.4191 36 1 8.1495 -0.3530 7.5046 37 1 2.2640 -2.8390 -0.5661 38 1 3.7673 -2.1327 -1.2352 39 1 3.8536 0.1653 -1.6317 40 1 3.4020 -1.3918 -3.4423 41 1 1.9982 -0.3789 -3.8566 42 1 3.5018 1.5591 -4.2170 43 1 4.9061 0.5468 -3.8031 44 1 3.3685 1.8313 -6.7400 45 1 3.7248 0.2858 -8.8322 46 1 4.5114 -2.1090 -7.9597 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724932705.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:42 Heat of formation + Delta-G solvation = 26.833757 kcal Electronic energy + Delta-G solvation = -26198.181719 eV Core-core repulsion = 22442.907065 eV Total energy + Delta-G solvation = -3755.274654 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.01321 -41.27113 -39.25544 -36.77910 -34.69653 -34.26498 -33.31060 -31.56844 -31.01208 -29.61965 -27.93967 -27.62100 -27.11565 -24.52592 -23.30973 -21.94386 -21.65250 -20.91386 -20.85082 -19.64575 -18.31297 -18.08172 -17.32990 -17.15032 -16.79411 -16.50814 -16.39562 -16.19913 -15.73951 -15.19005 -15.07125 -14.94883 -14.78792 -14.65651 -14.24709 -13.94771 -13.66307 -13.58900 -13.55596 -13.41410 -13.26351 -13.07595 -13.04305 -12.88930 -12.68158 -12.52076 -12.02585 -11.89866 -11.87610 -11.68102 -11.54008 -11.19544 -11.06102 -10.57025 -10.40510 -10.09584 -9.51634 -9.45684 -9.03813 -8.53762 -6.25266 0.92184 0.99902 1.28884 1.41976 1.45246 1.50040 1.57233 1.96962 1.97975 2.22578 2.64970 2.84262 2.98796 3.37609 3.49371 3.66653 3.81276 3.84740 4.06432 4.07954 4.09984 4.16064 4.19387 4.29824 4.35501 4.36078 4.46881 4.53109 4.61751 4.66913 4.71543 4.78054 4.85412 4.91142 4.93766 5.12850 5.14207 5.16894 5.31630 5.45280 5.68715 5.74734 5.89722 6.06711 6.09128 6.19238 6.34178 6.78485 6.91240 6.99203 8.58473 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013263 B = 0.002315 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.647186 B =12092.441990 C =13567.295678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.086 4.086 3 H 0.091 0.909 4 C 0.093 3.907 5 N -0.618 5.618 6 C 0.553 3.447 7 O -0.567 6.567 8 C -0.101 4.101 9 S -0.177 6.177 10 C -0.527 4.527 11 H 0.064 0.936 12 C 0.047 3.953 13 N -0.914 5.914 14 Si 0.913 3.087 15 H -0.262 1.262 16 H -0.258 1.258 17 H -0.239 1.239 18 C 0.074 3.926 19 C 0.089 3.911 20 H 0.115 0.885 21 N -0.671 5.671 22 C 0.059 3.941 23 C 0.134 3.866 24 N -0.380 5.380 25 C 0.056 3.944 26 C -0.287 4.287 27 C 0.033 3.967 28 N -0.346 5.346 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.277 0.723 37 H 0.086 0.914 38 H 0.057 0.943 39 H 0.341 0.659 40 H 0.023 0.977 41 H 0.085 0.915 42 H 0.132 0.868 43 H 0.073 0.927 44 H 0.208 0.792 45 H 0.168 0.832 46 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.006 4.154 -26.943 32.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.106 4.106 3 H 0.109 0.891 4 C -0.029 4.029 5 N -0.353 5.353 6 C 0.341 3.659 7 O -0.446 6.446 8 C -0.251 4.251 9 S 0.050 5.950 10 C -0.675 4.675 11 H 0.082 0.918 12 C -0.159 4.159 13 N -0.552 5.552 14 Si 0.735 3.265 15 H -0.187 1.187 16 H -0.182 1.182 17 H -0.163 1.163 18 C -0.050 4.050 19 C -0.022 4.022 20 H 0.133 0.867 21 N -0.301 5.301 22 C -0.071 4.071 23 C 0.013 3.987 24 N -0.163 5.163 25 C -0.090 4.090 26 C -0.317 4.317 27 C -0.153 4.153 28 N -0.168 5.168 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.111 0.889 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.087 0.913 37 H 0.105 0.895 38 H 0.076 0.924 39 H 0.159 0.841 40 H 0.042 0.958 41 H 0.103 0.897 42 H 0.150 0.850 43 H 0.091 0.909 44 H 0.225 0.775 45 H 0.186 0.814 46 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -16.754 3.158 -26.436 31.457 hybrid contribution 0.447 -0.018 0.463 0.643 sum -16.307 3.140 -25.973 30.828 Atomic orbital electron populations 1.21757 0.91681 1.02755 1.03039 1.22098 0.97485 0.99764 0.91222 0.89092 1.22917 0.85740 0.96187 0.98089 1.48857 1.12668 1.55942 1.17788 1.19633 0.80849 0.78906 0.86494 1.90699 1.42799 1.43101 1.67979 1.23178 1.00615 1.05319 0.96020 1.84753 1.17179 1.74896 1.18171 1.22419 1.04001 1.40586 1.00485 0.91813 1.25536 1.01181 0.95037 0.94132 1.70011 1.31967 1.44012 1.09216 0.85890 0.80007 0.80911 0.79701 1.18677 1.18187 1.16334 1.23206 0.99194 0.99355 0.83250 1.22676 0.95231 0.89896 0.94408 0.86725 1.60642 1.17274 1.50753 1.01426 1.22055 1.00190 0.96096 0.88776 1.21712 1.01032 0.99553 0.76392 1.48821 1.51846 1.08633 1.07005 1.23256 0.99827 1.00039 0.85831 1.21891 1.14952 0.93915 1.00894 1.24398 0.99004 1.00088 0.91779 1.77350 1.24026 1.00366 1.15097 0.91720 0.91440 0.91327 0.89670 0.88893 0.87053 0.87211 0.91316 0.89543 0.92419 0.84131 0.95818 0.89661 0.84980 0.90906 0.77482 0.81410 0.78387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.13 8.92 71.98 0.64 -0.49 16 2 C -0.09 -1.11 3.45 -9.89 -0.03 -1.14 16 3 H 0.09 1.32 7.95 -2.39 -0.02 1.30 16 4 C 0.09 1.60 6.46 86.53 0.56 2.16 16 5 N -0.62 -15.83 3.32 -807.95 -2.68 -18.51 16 6 C 0.55 20.10 7.93 87.66 0.70 20.79 16 7 O -0.57 -25.55 16.13 -3.06 -0.05 -25.60 16 8 C -0.10 -3.91 5.13 71.24 0.37 -3.55 16 9 S -0.18 -9.09 18.55 -56.49 -1.05 -10.13 16 10 C -0.53 -30.84 10.04 67.95 0.68 -30.16 16 11 H 0.06 3.91 8.03 -2.91 -0.02 3.89 16 12 C 0.05 2.76 5.50 84.86 0.47 3.23 16 13 N -0.91 -55.63 13.97 21.65 0.30 -55.33 16 14 Si 0.91 45.40 27.74 68.60 1.90 47.30 16 15 H -0.26 -12.72 7.11 99.48 0.71 -12.01 16 16 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 17 H -0.24 -11.97 6.74 99.48 0.67 -11.30 16 18 C 0.07 1.56 6.48 86.53 0.56 2.12 16 19 C 0.09 1.28 3.02 45.82 0.14 1.42 16 20 H 0.11 1.27 7.41 -2.39 -0.02 1.26 16 21 N -0.67 -10.25 6.17 -486.89 -3.00 -13.25 16 22 C 0.06 0.89 5.72 86.30 0.49 1.39 16 23 C 0.13 1.90 6.77 86.38 0.58 2.48 16 24 N -0.38 -6.69 3.68 -348.07 -1.28 -7.97 16 25 C 0.06 0.71 11.45 83.54 0.96 1.67 16 26 C -0.29 -3.89 10.80 21.99 0.24 -3.65 16 27 C 0.03 0.57 12.03 85.24 1.02 1.60 16 28 N -0.35 -7.93 12.42 -57.03 -0.71 -8.64 16 29 H 0.06 0.47 8.10 -2.39 -0.02 0.45 16 30 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.08 1.51 7.30 -2.39 -0.02 1.50 16 33 H 0.09 1.32 7.83 -2.39 -0.02 1.30 16 34 H 0.11 3.99 7.95 -2.40 -0.02 3.97 16 35 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 36 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 37 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.06 1.52 7.61 -2.39 -0.02 1.50 16 39 H 0.34 6.52 8.46 -89.69 -0.76 5.76 16 40 H 0.02 0.49 7.98 -2.39 -0.02 0.47 16 41 H 0.09 1.18 8.07 -2.38 -0.02 1.16 16 42 H 0.13 1.12 8.07 -2.39 -0.02 1.10 16 43 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.21 0.91 8.06 -2.91 -0.02 0.89 16 45 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 46 H 0.20 2.35 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -79.08 394.58 0.99 -78.09 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: 0.18 Total: 16.18 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: 7.37 Total: -2.15 kcal Atomic # 7 Polarization: -96.33 SS G_CDS: -7.37 Total: -103.70 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.05 Total: -25.60 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.90 Total: 47.30 kcal Atomic # 16 Polarization: -9.09 SS G_CDS: -1.05 Total: -10.13 kcal Total: -79.08 0.99 -78.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724932705.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.926 kcal (2) G-P(sol) polarization free energy of solvation -79.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds