Wall clock time and date at job start Tue Mar 31 2020 21:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47624 * 2 1 4 4 C 1.50703 * 109.47084 * 239.99590 * 2 1 3 5 5 O 1.21279 * 119.99926 * 239.99962 * 4 2 1 6 6 N 1.34775 * 119.99773 * 60.00361 * 4 2 1 7 7 C 1.46504 * 119.99531 * 179.97438 * 6 4 2 8 8 C 1.53006 * 109.46883 * 179.97438 * 7 6 4 9 9 H 1.09000 * 109.47314 * 295.00505 * 8 7 6 10 10 N 1.46498 * 109.46726 * 55.00397 * 8 7 6 11 11 C 1.36944 * 119.99673 * 204.99978 * 10 8 7 12 12 H 1.07995 * 119.99746 * 359.97438 * 11 10 8 13 13 C 1.38811 * 119.99915 * 179.97438 * 11 10 8 14 14 N 1.31621 * 119.99908 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00196 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47141 * 60.00102 * 15 13 11 17 17 H 1.48497 * 109.47438 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.46992 * 300.00166 * 15 13 11 19 19 C 1.52996 * 109.47102 * 175.00371 * 8 7 6 20 20 C 1.52999 * 117.49668 * 248.74935 * 19 8 7 21 21 C 1.53001 * 117.49904 * 180.09004 * 19 8 7 22 22 C 1.50706 * 109.47237 * 120.00037 * 2 1 3 23 23 C 1.38257 * 119.96009 * 240.00272 * 22 2 1 24 24 C 1.38218 * 120.06751 * 179.97438 * 23 22 2 25 25 C 1.38410 * 120.00042 * 359.97438 * 24 23 22 26 26 F 1.35097 * 120.03496 * 180.02562 * 25 24 23 27 27 C 1.38651 * 119.92842 * 0.02562 * 25 24 23 28 28 F 1.35104 * 120.03362 * 179.97438 * 27 25 24 29 29 C 1.38203 * 119.96747 * 59.72123 * 22 2 1 30 30 H 1.09001 * 109.46922 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47140 * 300.00469 * 1 2 3 32 32 H 1.09002 * 109.47045 * 60.00376 * 1 2 3 33 33 H 0.96992 * 120.00503 * 359.97438 * 6 4 2 34 34 H 1.09001 * 109.46891 * 60.00097 * 7 6 4 35 35 H 1.08993 * 109.47378 * 299.99469 * 7 6 4 36 36 H 0.96995 * 120.00562 * 24.99991 * 10 8 7 37 37 H 0.97002 * 120.00013 * 180.02562 * 14 13 11 38 38 H 1.08999 * 115.55229 * 34.41257 * 19 8 7 39 39 H 1.09004 * 117.50164 * 0.02562 * 20 19 8 40 40 H 1.09005 * 117.50063 * 145.01790 * 20 19 8 41 41 H 1.08998 * 117.49830 * 214.97533 * 21 19 8 42 42 H 1.08999 * 117.49605 * 359.97438 * 21 19 8 43 43 H 1.08001 * 119.96914 * 359.97032 * 23 22 2 44 44 H 1.08004 * 120.00094 * 179.97438 * 24 23 22 45 45 H 1.08007 * 120.00177 * 359.97438 * 29 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7296 -1.6966 -1.1191 6 7 1.7067 -0.2501 -2.4545 7 6 2.1956 -0.9405 -3.6506 8 6 1.6850 -0.2197 -4.9000 9 1 0.5987 -0.2973 -4.9458 10 7 2.0717 1.1921 -4.8414 11 6 1.3433 2.1303 -5.5231 12 1 0.4842 1.8293 -6.1041 13 6 1.7093 3.4681 -5.4672 14 7 2.7567 3.8348 -4.7594 15 14 0.7163 4.7479 -6.3975 16 1 -0.6855 4.7388 -5.9077 17 1 1.3095 6.0912 -6.1769 18 1 0.7358 4.4309 -7.8482 19 6 2.2954 -0.8644 -6.1460 20 6 3.3101 -0.0414 -6.9422 21 6 1.9071 -0.2805 -7.5058 22 6 2.0324 -0.7104 1.2305 23 6 2.8271 -0.0377 2.1400 24 6 3.2887 -0.6870 3.2696 25 6 2.9548 -2.0118 3.4914 26 9 3.4051 -2.6469 4.5954 27 6 2.1578 -2.6864 2.5792 28 9 1.8311 -3.9797 2.7932 29 6 1.6933 -2.0319 1.4514 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.1489 0.5383 -2.5436 34 1 1.8326 -1.9683 -3.6507 35 1 3.2855 -0.9400 -3.6505 36 1 2.8435 1.4624 -4.3199 37 1 3.0123 4.7697 -4.7201 38 1 2.4556 -1.9410 -6.0878 39 1 3.5431 0.9593 -6.5780 40 1 4.1376 -0.5765 -7.4081 41 1 1.8121 -0.9728 -8.3423 42 1 1.2165 0.5628 -7.5127 43 1 3.0877 0.9961 1.9678 44 1 3.9098 -0.1605 3.9792 45 1 1.0683 -2.5549 0.7427 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731410199.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:13 Heat of formation + Delta-G solvation = -69.259054 kcal Electronic energy + Delta-G solvation = -28989.537189 eV Core-core repulsion = 24643.962501 eV Total energy + Delta-G solvation = -4345.574688 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.56799 -48.64431 -40.29340 -38.69450 -37.60530 -34.54206 -34.13504 -33.28701 -31.04025 -30.85046 -29.38187 -28.05077 -25.03451 -23.84885 -23.36785 -22.88776 -21.81408 -21.42974 -19.98919 -19.06579 -18.09830 -17.60777 -17.38689 -17.09038 -16.53478 -16.33240 -15.79819 -15.29331 -15.06117 -14.95730 -14.70759 -14.63930 -14.37112 -14.18543 -13.83667 -13.78843 -13.43618 -13.15015 -12.91769 -12.75957 -12.61229 -12.11955 -12.09917 -11.78013 -11.46829 -11.32453 -11.27622 -11.19429 -10.92477 -10.89955 -10.57309 -10.20310 -9.76658 -9.66327 -9.47104 -9.21379 -9.18467 -9.03894 -8.77651 -8.68851 -7.13722 -5.90199 -3.20505 0.73234 0.86959 2.83699 3.10337 3.34182 3.40020 3.41305 3.56408 3.63667 4.16437 4.27546 4.39570 4.44191 4.58911 4.77406 4.88873 4.92959 5.02672 5.15442 5.31720 5.40616 5.46696 5.53162 5.59237 5.61784 5.68946 5.69510 5.74789 5.80440 5.83783 5.92991 5.95506 6.00712 6.03977 6.21973 6.34901 6.40706 6.58232 6.60721 6.69170 6.83961 6.95984 7.23268 7.59065 7.84845 8.26967 8.47733 9.39434 9.92759 10.29093 11.31048 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016094 B = 0.002590 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.373914 B =10806.483132 C =11813.622620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.074 4.074 3 H 0.114 0.886 4 C 0.514 3.486 5 O -0.546 6.546 6 N -0.708 5.708 7 C 0.119 3.881 8 C 0.192 3.808 9 H 0.057 0.943 10 N -0.717 5.717 11 C -0.241 4.241 12 H 0.071 0.929 13 C -0.007 4.007 14 N -0.928 5.928 15 Si 0.902 3.098 16 H -0.286 1.286 17 H -0.292 1.292 18 H -0.286 1.286 19 C -0.178 4.178 20 C -0.163 4.163 21 C -0.175 4.175 22 C -0.041 4.041 23 C -0.092 4.092 24 C -0.127 4.127 25 C 0.062 3.938 26 F -0.133 7.133 27 C 0.065 3.935 28 F -0.131 7.131 29 C -0.091 4.091 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.411 0.589 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.386 0.614 37 H 0.256 0.744 38 H 0.085 0.915 39 H 0.118 0.882 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.102 0.898 43 H 0.142 0.858 44 H 0.146 0.854 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.064 -8.125 12.203 14.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.096 4.096 3 H 0.132 0.868 4 C 0.299 3.701 5 O -0.424 6.424 6 N -0.360 5.360 7 C -0.005 4.005 8 C 0.082 3.918 9 H 0.075 0.925 10 N -0.359 5.359 11 C -0.372 4.372 12 H 0.089 0.911 13 C -0.203 4.203 14 N -0.576 5.576 15 Si 0.733 3.267 16 H -0.213 1.213 17 H -0.218 1.218 18 H -0.213 1.213 19 C -0.200 4.200 20 C -0.200 4.200 21 C -0.212 4.212 22 C -0.042 4.042 23 C -0.110 4.110 24 C -0.146 4.146 25 C 0.042 3.958 26 F -0.111 7.111 27 C 0.045 3.955 28 F -0.110 7.110 29 C -0.110 4.110 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.248 0.752 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.221 0.779 37 H 0.066 0.934 38 H 0.103 0.897 39 H 0.137 0.863 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.121 0.879 43 H 0.160 0.840 44 H 0.163 0.837 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.682 -8.780 12.222 15.286 hybrid contribution -0.316 0.814 -0.375 0.950 sum -2.998 -7.967 11.847 14.588 Atomic orbital electron populations 1.21824 0.91566 1.03046 1.03597 1.20339 0.98093 1.00817 0.90326 0.86765 1.20262 0.80557 0.84655 0.84597 1.90706 1.38234 1.26639 1.86847 1.45946 1.52911 1.32147 1.04948 1.21590 0.99484 0.95328 0.84136 1.19989 0.96991 0.85537 0.89329 0.92520 1.42467 1.34708 0.99794 1.58930 1.19112 1.07713 0.87172 1.23205 0.91134 1.24701 0.98111 0.97104 1.00416 1.69643 1.27220 1.16422 1.44289 0.86351 0.79351 0.81224 0.79726 1.21298 1.21788 1.21272 1.23069 1.05474 0.97190 0.94252 1.22911 0.91198 1.02973 1.02901 1.22849 1.00232 1.03069 0.95082 1.19270 0.96717 0.93097 0.95099 1.21017 0.96323 1.00780 0.92859 1.21006 1.01893 0.92103 0.99611 1.17692 1.00428 0.92189 0.85539 1.91511 1.87457 1.81957 1.50201 1.17617 1.01290 0.79844 0.96733 1.91519 1.91063 1.33617 1.94765 1.20847 1.00366 0.94691 0.95050 0.91921 0.91099 0.90797 0.75249 0.91863 0.91666 0.77931 0.93380 0.89660 0.86349 0.91303 0.91029 0.87940 0.83998 0.83669 0.83916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.90 37.16 0.33 -0.94 16 2 C -0.07 -0.81 2.90 -92.92 -0.27 -1.08 16 3 H 0.11 1.12 7.87 -51.93 -0.41 0.71 16 4 C 0.51 7.43 7.03 -10.98 -0.08 7.35 16 5 O -0.55 -9.65 15.13 5.56 0.08 -9.57 16 6 N -0.71 -10.38 5.28 -60.29 -0.32 -10.70 16 7 C 0.12 1.87 5.22 -4.04 -0.02 1.85 16 8 C 0.19 3.31 2.86 -67.93 -0.19 3.12 16 9 H 0.06 0.99 8.08 -51.93 -0.42 0.57 16 10 N -0.72 -15.03 3.08 -53.43 -0.16 -15.20 16 11 C -0.24 -5.73 8.16 -15.06 -0.12 -5.85 16 12 H 0.07 1.66 6.91 -52.49 -0.36 1.30 16 13 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 14 N -0.93 -25.19 13.06 55.49 0.72 -24.46 16 15 Si 0.90 20.58 29.55 -169.99 -5.02 15.55 16 16 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 19 C -0.18 -2.98 5.71 -90.62 -0.52 -3.49 16 20 C -0.16 -2.95 9.74 -26.69 -0.26 -3.21 16 21 C -0.18 -3.03 9.87 -26.69 -0.26 -3.29 16 22 C -0.04 -0.46 4.39 -104.62 -0.46 -0.92 16 23 C -0.09 -0.89 9.67 -39.58 -0.38 -1.27 16 24 C -0.13 -1.23 10.02 -39.53 -0.40 -1.63 16 25 C 0.06 0.73 7.31 -39.37 -0.29 0.44 16 26 F -0.13 -1.66 17.18 2.25 0.04 -1.62 16 27 C 0.07 0.83 7.31 -39.37 -0.29 0.54 16 28 F -0.13 -1.78 17.18 2.25 0.04 -1.74 16 29 C -0.09 -1.10 7.91 -39.53 -0.31 -1.41 16 30 H 0.06 0.55 7.37 -51.93 -0.38 0.17 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.66 7.56 -51.93 -0.39 0.27 16 33 H 0.41 6.00 7.55 -40.82 -0.31 5.69 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.39 8.95 7.80 -40.82 -0.32 8.63 16 37 H 0.26 6.90 8.31 -40.82 -0.34 6.57 16 38 H 0.09 1.28 8.11 -51.93 -0.42 0.86 16 39 H 0.12 2.58 6.68 -51.93 -0.35 2.23 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.10 1.98 6.22 -51.93 -0.32 1.65 16 43 H 0.14 1.05 7.94 -52.49 -0.42 0.63 16 44 H 0.15 1.04 8.06 -52.48 -0.42 0.62 16 45 H 0.14 1.69 7.51 -52.48 -0.39 1.30 16 LS Contribution 380.97 15.07 5.74 5.74 Total: -1.00 -28.13 380.97 -8.66 -36.80 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -6.17 Total: 15.26 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -3.62 Total: -10.05 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: 0.24 Total: -50.36 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.08 Total: -9.57 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 0.08 Total: -3.36 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -28.13 -8.66 -36.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731410199.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.464 kcal (2) G-P(sol) polarization free energy of solvation -28.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds