Wall clock time and date at job start Tue Mar 31 2020 21:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47624 * 2 1 4 4 C 1.50703 * 109.47084 * 239.99590 * 2 1 3 5 5 O 1.21279 * 119.99926 * 239.99962 * 4 2 1 6 6 N 1.34775 * 119.99773 * 60.00361 * 4 2 1 7 7 C 1.46504 * 119.99531 * 179.97438 * 6 4 2 8 8 C 1.53006 * 109.46883 * 179.97438 * 7 6 4 9 9 H 1.09000 * 109.47314 * 295.00505 * 8 7 6 10 10 N 1.46498 * 109.46726 * 55.00397 * 8 7 6 11 11 C 1.36944 * 119.99673 * 204.99978 * 10 8 7 12 12 H 1.07995 * 119.99746 * 359.97438 * 11 10 8 13 13 C 1.38811 * 119.99915 * 179.97438 * 11 10 8 14 14 N 1.31621 * 119.99908 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00196 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47141 * 60.00102 * 15 13 11 17 17 H 1.48497 * 109.47438 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.46992 * 300.00166 * 15 13 11 19 19 C 1.52996 * 109.47102 * 175.00371 * 8 7 6 20 20 C 1.52999 * 117.49668 * 248.74935 * 19 8 7 21 21 C 1.53001 * 117.49904 * 180.09004 * 19 8 7 22 22 C 1.50706 * 109.47237 * 120.00037 * 2 1 3 23 23 C 1.38257 * 119.96009 * 240.00272 * 22 2 1 24 24 C 1.38218 * 120.06751 * 179.97438 * 23 22 2 25 25 C 1.38410 * 120.00042 * 359.97438 * 24 23 22 26 26 F 1.35097 * 120.03496 * 180.02562 * 25 24 23 27 27 C 1.38651 * 119.92842 * 0.02562 * 25 24 23 28 28 F 1.35104 * 120.03362 * 179.97438 * 27 25 24 29 29 C 1.38203 * 119.96747 * 59.72123 * 22 2 1 30 30 H 1.09001 * 109.46922 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47140 * 300.00469 * 1 2 3 32 32 H 1.09002 * 109.47045 * 60.00376 * 1 2 3 33 33 H 0.96992 * 120.00503 * 359.97438 * 6 4 2 34 34 H 1.09001 * 109.46891 * 60.00097 * 7 6 4 35 35 H 1.08993 * 109.47378 * 299.99469 * 7 6 4 36 36 H 0.96995 * 120.00562 * 24.99991 * 10 8 7 37 37 H 0.97002 * 120.00013 * 180.02562 * 14 13 11 38 38 H 1.08999 * 115.55229 * 34.41257 * 19 8 7 39 39 H 1.09004 * 117.50164 * 0.02562 * 20 19 8 40 40 H 1.09005 * 117.50063 * 145.01790 * 20 19 8 41 41 H 1.08998 * 117.49830 * 214.97533 * 21 19 8 42 42 H 1.08999 * 117.49605 * 359.97438 * 21 19 8 43 43 H 1.08001 * 119.96914 * 359.97032 * 23 22 2 44 44 H 1.08004 * 120.00094 * 179.97438 * 24 23 22 45 45 H 1.08007 * 120.00177 * 359.97438 * 29 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7296 -1.6966 -1.1191 6 7 1.7067 -0.2501 -2.4545 7 6 2.1956 -0.9405 -3.6506 8 6 1.6850 -0.2197 -4.9000 9 1 0.5987 -0.2973 -4.9458 10 7 2.0717 1.1921 -4.8414 11 6 1.3433 2.1303 -5.5231 12 1 0.4842 1.8293 -6.1041 13 6 1.7093 3.4681 -5.4672 14 7 2.7567 3.8348 -4.7594 15 14 0.7163 4.7479 -6.3975 16 1 -0.6855 4.7388 -5.9077 17 1 1.3095 6.0912 -6.1769 18 1 0.7358 4.4309 -7.8482 19 6 2.2954 -0.8644 -6.1460 20 6 3.3101 -0.0414 -6.9422 21 6 1.9071 -0.2805 -7.5058 22 6 2.0324 -0.7104 1.2305 23 6 2.8271 -0.0377 2.1400 24 6 3.2887 -0.6870 3.2696 25 6 2.9548 -2.0118 3.4914 26 9 3.4051 -2.6469 4.5954 27 6 2.1578 -2.6864 2.5792 28 9 1.8311 -3.9797 2.7932 29 6 1.6933 -2.0319 1.4514 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.1489 0.5383 -2.5436 34 1 1.8326 -1.9683 -3.6507 35 1 3.2855 -0.9400 -3.6505 36 1 2.8435 1.4624 -4.3199 37 1 3.0123 4.7697 -4.7201 38 1 2.4556 -1.9410 -6.0878 39 1 3.5431 0.9593 -6.5780 40 1 4.1376 -0.5765 -7.4081 41 1 1.8121 -0.9728 -8.3423 42 1 1.2165 0.5628 -7.5127 43 1 3.0877 0.9961 1.9678 44 1 3.9098 -0.1605 3.9792 45 1 1.0683 -2.5549 0.7427 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731410199.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:12 Heat of formation + Delta-G solvation = -83.672163 kcal Electronic energy + Delta-G solvation = -28990.162188 eV Core-core repulsion = 24643.962501 eV Total energy + Delta-G solvation = -4346.199687 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -50.52330 -49.60858 -41.33267 -39.77157 -38.98205 -35.86772 -35.12902 -34.91934 -32.53103 -31.81200 -30.40667 -29.42889 -26.05534 -25.40018 -24.45328 -24.02332 -23.07123 -22.64778 -21.18470 -20.42140 -19.23933 -18.96135 -18.48550 -18.13688 -17.56423 -17.32507 -17.00986 -16.68748 -16.31319 -16.15202 -16.04008 -15.62574 -15.51430 -15.34394 -15.07793 -14.95426 -14.57544 -14.46300 -14.28531 -13.73576 -13.55518 -13.34063 -12.99622 -12.90513 -12.80907 -12.65513 -12.59369 -12.57671 -12.22004 -12.15401 -12.09850 -11.94354 -11.55449 -11.01406 -10.94194 -10.68743 -10.58437 -10.04220 -9.94259 -9.66995 -8.95199 -7.84586 -5.11665 -0.14844 0.03194 1.52815 1.55099 1.58978 1.70312 2.15696 2.52998 2.62055 2.76851 3.15413 3.26311 3.41052 3.50139 3.59304 3.85956 3.91891 4.00445 4.03632 4.09521 4.21918 4.29659 4.35816 4.37086 4.53786 4.60743 4.66673 4.72385 4.81085 4.85100 4.89274 4.95413 4.98009 4.98901 5.04319 5.21050 5.25477 5.29332 5.39500 5.45118 5.60251 5.69439 5.70080 5.73289 6.35499 6.66565 7.31292 7.44601 8.14860 8.40805 9.37297 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016094 B = 0.002590 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.373914 B =10806.483132 C =11813.622620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.067 4.067 3 H 0.131 0.869 4 C 0.513 3.487 5 O -0.580 6.580 6 N -0.707 5.707 7 C 0.129 3.871 8 C 0.194 3.806 9 H 0.062 0.938 10 N -0.719 5.719 11 C -0.218 4.218 12 H 0.075 0.925 13 C -0.062 4.062 14 N -0.962 5.962 15 Si 0.954 3.046 16 H -0.278 1.278 17 H -0.304 1.304 18 H -0.288 1.288 19 C -0.169 4.169 20 C -0.174 4.174 21 C -0.171 4.171 22 C -0.049 4.049 23 C -0.085 4.085 24 C -0.117 4.117 25 C 0.048 3.952 26 F -0.140 7.140 27 C 0.043 3.957 28 F -0.143 7.143 29 C -0.099 4.099 30 H 0.059 0.941 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.412 0.588 34 H 0.077 0.923 35 H 0.049 0.951 36 H 0.375 0.625 37 H 0.247 0.753 38 H 0.112 0.888 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.079 0.921 43 H 0.172 0.828 44 H 0.175 0.825 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.791 -8.167 12.338 15.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.088 4.088 3 H 0.149 0.851 4 C 0.300 3.700 5 O -0.461 6.461 6 N -0.358 5.358 7 C 0.004 3.996 8 C 0.085 3.915 9 H 0.079 0.921 10 N -0.359 5.359 11 C -0.350 4.350 12 H 0.092 0.908 13 C -0.255 4.255 14 N -0.612 5.612 15 Si 0.785 3.215 16 H -0.205 1.205 17 H -0.231 1.231 18 H -0.215 1.215 19 C -0.190 4.190 20 C -0.211 4.211 21 C -0.208 4.208 22 C -0.050 4.050 23 C -0.103 4.103 24 C -0.136 4.136 25 C 0.028 3.972 26 F -0.118 7.118 27 C 0.023 3.977 28 F -0.122 7.122 29 C -0.117 4.117 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.093 0.907 33 H 0.249 0.751 34 H 0.095 0.905 35 H 0.067 0.933 36 H 0.208 0.792 37 H 0.056 0.944 38 H 0.130 0.870 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.117 0.883 42 H 0.098 0.902 43 H 0.189 0.811 44 H 0.193 0.807 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.453 -8.854 12.344 15.579 hybrid contribution -0.084 0.747 -0.445 0.874 sum -3.536 -8.107 11.899 14.826 Atomic orbital electron populations 1.21833 0.90001 1.03266 1.04599 1.20353 0.99310 1.00891 0.88215 0.85103 1.20875 0.79681 0.84194 0.85288 1.90693 1.39803 1.28261 1.87328 1.45930 1.52824 1.32078 1.04948 1.21419 0.98451 0.95852 0.83901 1.20109 0.97231 0.83684 0.90507 0.92052 1.42501 1.33951 1.01093 1.58322 1.19347 1.06871 0.87416 1.21355 0.90757 1.25242 0.99343 0.98822 1.02119 1.69773 1.29066 1.15835 1.46559 0.85516 0.78528 0.78899 0.78573 1.20456 1.23133 1.21493 1.23082 1.04124 0.98340 0.93450 1.22769 0.92526 1.01533 1.04272 1.22838 0.98702 1.02855 0.96378 1.19416 0.97163 0.92824 0.95573 1.21378 0.94900 1.01968 0.92044 1.21347 1.01224 0.91066 0.99943 1.17954 1.00775 0.93099 0.85347 1.91489 1.87566 1.82280 1.50509 1.17857 1.02515 0.79661 0.97662 1.91477 1.91337 1.34486 1.94916 1.20866 1.00711 0.95309 0.94860 0.92153 0.89159 0.90698 0.75075 0.90524 0.93282 0.79250 0.94411 0.86968 0.90303 0.89355 0.88265 0.90219 0.81103 0.80744 0.84455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 8.90 71.98 0.64 -1.57 16 2 C -0.07 -1.33 2.90 -12.28 -0.04 -1.36 16 3 H 0.13 2.20 7.87 -2.39 -0.02 2.18 16 4 C 0.51 14.28 7.03 87.66 0.62 14.90 16 5 O -0.58 -20.25 15.13 -3.03 -0.05 -20.29 16 6 N -0.71 -19.96 5.28 -463.05 -2.45 -22.41 16 7 C 0.13 3.89 5.22 86.38 0.45 4.34 16 8 C 0.19 6.41 2.86 44.99 0.13 6.54 16 9 H 0.06 2.02 8.08 -2.39 -0.02 2.00 16 10 N -0.72 -29.85 3.08 -322.94 -0.99 -30.84 16 11 C -0.22 -10.25 8.16 84.03 0.69 -9.56 16 12 H 0.07 3.42 6.91 -2.91 -0.02 3.40 16 13 C -0.06 -3.18 5.50 84.86 0.47 -2.71 16 14 N -0.96 -52.94 13.06 21.65 0.28 -52.66 16 15 Si 0.95 42.41 29.55 68.60 2.03 44.44 16 16 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 17 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 18 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 19 C -0.17 -5.28 5.71 -10.79 -0.06 -5.34 16 20 C -0.17 -6.12 9.74 30.62 0.30 -5.82 16 21 C -0.17 -5.55 9.87 30.62 0.30 -5.24 16 22 C -0.05 -1.02 4.39 -19.87 -0.09 -1.10 16 23 C -0.09 -1.41 9.67 22.27 0.22 -1.20 16 24 C -0.12 -2.00 10.02 22.31 0.22 -1.78 16 25 C 0.05 1.11 7.31 22.41 0.16 1.27 16 26 F -0.14 -3.43 17.18 44.97 0.77 -2.65 16 27 C 0.04 1.10 7.31 22.41 0.16 1.26 16 28 F -0.14 -4.02 17.18 44.97 0.77 -3.25 16 29 C -0.10 -2.36 7.91 22.30 0.18 -2.18 16 30 H 0.06 0.99 7.37 -2.39 -0.02 0.97 16 31 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 1.18 7.56 -2.39 -0.02 1.17 16 33 H 0.41 11.54 7.55 -92.71 -0.70 10.84 16 34 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.37 17.49 7.80 -92.71 -0.72 16.76 16 37 H 0.25 13.59 8.31 -92.71 -0.77 12.82 16 38 H 0.11 2.98 8.11 -2.39 -0.02 2.96 16 39 H 0.08 3.47 6.68 -2.38 -0.02 3.45 16 40 H 0.09 2.74 8.14 -2.38 -0.02 2.72 16 41 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 42 H 0.08 2.97 6.22 -2.39 -0.01 2.95 16 43 H 0.17 1.84 7.94 -2.91 -0.02 1.81 16 44 H 0.18 1.90 8.06 -2.91 -0.02 1.87 16 45 H 0.14 3.31 7.51 -2.91 -0.02 3.29 16 Total: -1.00 -61.41 380.97 4.33 -57.08 By element: Atomic # 1 Polarization: 40.54 SS G_CDS: -0.38 Total: 40.16 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: 4.35 Total: -9.56 kcal Atomic # 7 Polarization: -102.76 SS G_CDS: -3.16 Total: -105.91 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.05 Total: -20.29 kcal Atomic # 9 Polarization: -7.45 SS G_CDS: 1.55 Total: -5.90 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -61.41 4.33 -57.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731410199.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.597 kcal (2) G-P(sol) polarization free energy of solvation -61.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds