Wall clock time and date at job start Tue Mar 31 2020 21:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.46651 * 2 1 4 4 C 1.50700 * 109.47139 * 239.99647 * 2 1 3 5 5 O 1.21279 * 120.00196 * 239.99745 * 4 2 1 6 6 N 1.34781 * 119.99627 * 59.99766 * 4 2 1 7 7 C 1.46500 * 119.99631 * 179.97438 * 6 4 2 8 8 C 1.52991 * 109.47240 * 180.02562 * 7 6 4 9 9 N 1.46500 * 109.47240 * 179.97438 * 8 7 6 10 10 C 1.36935 * 119.99962 * 269.99848 * 9 8 7 11 11 H 1.07997 * 119.99733 * 140.53754 * 10 9 8 12 12 C 1.38813 * 120.00353 * 320.53485 * 10 9 8 13 13 N 1.31618 * 120.00170 * 340.28504 * 12 10 9 14 14 Si 1.86805 * 120.00118 * 160.27421 * 12 10 9 15 15 H 1.48503 * 109.46865 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.46876 * 120.00204 * 14 12 10 17 17 H 1.48492 * 109.47052 * 240.00590 * 14 12 10 18 18 C 1.46503 * 119.99754 * 90.00576 * 9 8 7 19 19 C 1.52998 * 117.49302 * 183.28867 * 18 9 8 20 20 C 1.52994 * 117.49922 * 114.66606 * 18 9 8 21 21 C 1.50700 * 109.47099 * 119.99357 * 2 1 3 22 22 C 1.38416 * 120.02672 * 239.99951 * 21 2 1 23 23 F 1.35099 * 120.01268 * 0.02562 * 22 21 2 24 24 C 1.38477 * 119.97264 * 179.97438 * 22 21 2 25 25 C 1.38206 * 120.02727 * 0.26962 * 24 22 21 26 26 C 1.38209 * 120.04712 * 359.45984 * 25 24 22 27 27 C 1.38422 * 120.02203 * 59.98086 * 21 2 1 28 28 F 1.35102 * 120.01474 * 359.97438 * 27 21 2 29 29 H 1.08993 * 109.47089 * 60.00558 * 1 2 3 30 30 H 1.09001 * 109.46981 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46999 * 300.00034 * 1 2 3 32 32 H 0.96993 * 119.99960 * 0.02562 * 6 4 2 33 33 H 1.08998 * 109.47251 * 300.00558 * 7 6 4 34 34 H 1.09001 * 109.46670 * 59.99963 * 7 6 4 35 35 H 1.08998 * 109.47358 * 300.00375 * 8 7 6 36 36 H 1.09005 * 109.46948 * 60.00160 * 8 7 6 37 37 H 0.96991 * 120.00272 * 175.01584 * 13 12 10 38 38 H 1.08995 * 115.54739 * 328.98652 * 18 9 8 39 39 H 1.08996 * 117.50602 * 359.97438 * 19 18 9 40 40 H 1.09011 * 117.49809 * 145.01872 * 19 18 9 41 41 H 1.09000 * 117.49625 * 214.97442 * 20 18 9 42 42 H 1.08995 * 117.50518 * 359.97438 * 20 18 9 43 43 H 1.08000 * 119.98400 * 180.02562 * 24 22 21 44 44 H 1.07997 * 119.97691 * 179.70120 * 25 24 22 45 45 H 1.08003 * 119.98465 * 180.25104 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7297 -1.6965 -1.1191 6 7 1.7067 -0.2500 -2.4546 7 6 2.1955 -0.9404 -3.6507 8 6 1.6859 -0.2190 -4.8999 9 7 2.1752 -0.9090 -6.0960 10 6 3.3719 -0.5464 -6.6543 11 1 4.0381 -1.3028 -7.0420 12 6 3.7286 0.7935 -6.7220 13 7 2.8052 1.7261 -6.6234 14 14 5.5193 1.2728 -6.9526 15 1 6.3531 0.0467 -7.0354 16 1 5.6646 2.0553 -8.2063 17 1 5.9634 2.0971 -5.8001 18 6 1.3842 -1.9869 -6.6950 19 6 1.9844 -2.7198 -7.8964 20 6 0.8164 -1.7519 -8.0961 21 6 2.0324 -0.7103 1.2305 22 6 2.8282 -0.0380 2.1419 23 9 3.1546 1.2555 1.9291 24 6 3.2887 -0.6916 3.2726 25 6 2.9586 -2.0162 3.4883 26 6 2.1595 -2.6868 2.5818 27 6 1.6979 -2.0354 1.4504 28 9 0.9205 -2.6925 0.5621 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.1493 0.5388 -2.5435 33 1 3.2855 -0.9400 -3.6505 34 1 1.8326 -1.9682 -3.6507 35 1 0.5959 -0.2190 -4.9003 36 1 2.0492 0.8087 -4.8996 37 1 3.0612 2.6613 -6.5979 38 1 0.7814 -2.5702 -5.9989 39 1 2.9675 -2.3999 -8.2414 40 1 1.7765 -3.7857 -7.9909 41 1 -0.1598 -2.1809 -8.3220 42 1 1.0311 -0.7952 -8.5722 43 1 3.9093 -0.1672 3.9840 44 1 3.3222 -2.5266 4.3679 45 1 1.8988 -3.7208 2.7535 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731878778.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:50 Heat of formation + Delta-G solvation = -55.842679 kcal Electronic energy + Delta-G solvation = -29445.508038 eV Core-core repulsion = 25100.515128 eV Total energy + Delta-G solvation = -4344.992911 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -49.20109 -49.02302 -39.89401 -38.61786 -37.09648 -34.77493 -34.38912 -33.17054 -30.89240 -30.47811 -29.74483 -27.56258 -25.03214 -24.31035 -23.05221 -22.59098 -21.57494 -21.21180 -19.99064 -19.67569 -18.28965 -17.78376 -16.85430 -16.34470 -16.15114 -15.83445 -15.68885 -15.45739 -15.36284 -15.33726 -14.92874 -14.61157 -14.52805 -14.02271 -13.84779 -13.53074 -13.09688 -12.92809 -12.64379 -12.59354 -12.29569 -12.28930 -12.08906 -11.93024 -11.67184 -11.53058 -11.09029 -11.05852 -10.76569 -10.71374 -10.32706 -10.15092 -9.85785 -9.63188 -9.58279 -9.28965 -9.04288 -8.90290 -8.58104 -8.49237 -6.60876 -5.85840 -3.52596 0.75494 0.81641 2.91915 3.10140 3.30989 3.40535 3.43857 3.56404 3.73928 4.14109 4.23902 4.40088 4.46281 4.55625 4.88956 4.91708 4.95038 4.98781 5.11171 5.26881 5.31513 5.45213 5.55042 5.57450 5.70875 5.76759 5.82850 5.90785 5.92455 5.99517 6.04137 6.09790 6.20711 6.28376 6.50493 6.51278 6.56660 6.62129 6.84895 6.97268 7.07019 7.23116 7.46987 7.75334 7.88583 8.43049 8.54918 9.07846 9.68372 10.26354 11.09468 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014203 B = 0.002962 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.955400 B = 9451.670080 C =10449.448249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.075 4.075 3 H 0.112 0.888 4 C 0.515 3.485 5 O -0.538 6.538 6 N -0.716 5.716 7 C 0.100 3.900 8 C 0.142 3.858 9 N -0.547 5.547 10 C -0.261 4.261 11 H 0.066 0.934 12 C 0.016 3.984 13 N -0.883 5.883 14 Si 0.895 3.105 15 H -0.274 1.274 16 H -0.288 1.288 17 H -0.287 1.287 18 C 0.119 3.881 19 C -0.194 4.194 20 C -0.219 4.219 21 C -0.136 4.136 22 C 0.134 3.866 23 F -0.130 7.130 24 C -0.170 4.170 25 C -0.063 4.063 26 C -0.169 4.169 27 C 0.164 3.836 28 F -0.120 7.120 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.397 0.603 33 H 0.065 0.935 34 H 0.051 0.949 35 H 0.032 0.968 36 H 0.099 0.901 37 H 0.254 0.746 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.092 0.908 43 H 0.141 0.859 44 H 0.142 0.858 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.307 -3.508 19.834 20.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.096 4.096 3 H 0.130 0.870 4 C 0.299 3.701 5 O -0.415 6.415 6 N -0.367 5.367 7 C -0.025 4.025 8 C 0.015 3.985 9 N -0.264 5.264 10 C -0.390 4.390 11 H 0.083 0.917 12 C -0.185 4.185 13 N -0.524 5.524 14 Si 0.724 3.276 15 H -0.199 1.199 16 H -0.215 1.215 17 H -0.213 1.213 18 C 0.010 3.990 19 C -0.232 4.232 20 C -0.260 4.260 21 C -0.138 4.138 22 C 0.115 3.885 23 F -0.108 7.108 24 C -0.189 4.189 25 C -0.081 4.081 26 C -0.188 4.188 27 C 0.145 3.855 28 F -0.099 7.099 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.231 0.769 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.051 0.949 36 H 0.116 0.884 37 H 0.064 0.936 38 H 0.104 0.896 39 H 0.116 0.884 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.111 0.889 43 H 0.159 0.841 44 H 0.160 0.840 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.796 -4.002 19.756 20.720 hybrid contribution 0.669 0.876 -0.479 1.201 sum -4.128 -3.127 19.276 19.960 Atomic orbital electron populations 1.21855 0.91443 1.03818 1.03216 1.20209 0.98292 1.00821 0.90320 0.86997 1.20164 0.80703 0.84769 0.84452 1.90695 1.37881 1.26239 1.86649 1.46011 1.52997 1.31848 1.05822 1.22341 1.00067 0.96145 0.83988 1.21002 0.95432 0.99094 0.82996 1.43177 1.20298 1.37788 1.25159 1.19093 0.93317 0.90333 1.36279 0.91654 1.25238 0.97693 0.96435 0.99094 1.70056 1.31342 0.99745 1.51304 0.86353 0.85260 0.78494 0.77485 1.19871 1.21498 1.21301 1.21241 0.96850 0.93760 0.87125 1.23022 0.99026 0.95597 1.05604 1.23336 0.95513 1.00833 1.06292 1.19399 1.02515 0.94227 0.97694 1.17164 0.97117 0.79128 0.95103 1.91514 1.90724 1.33848 1.94733 1.21122 1.03929 0.96036 0.97764 1.20808 0.95429 0.93182 0.98696 1.21197 1.01560 1.01617 0.94464 1.17084 0.91855 0.89039 0.87556 1.91525 1.71301 1.80236 1.66799 0.90891 0.91141 0.91348 0.76894 0.91624 0.93055 0.94924 0.88367 0.93554 0.89561 0.88427 0.90747 0.91243 0.88946 0.84077 0.84032 0.84070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 8.88 37.16 0.33 -1.18 16 2 C -0.07 -0.97 2.79 -92.92 -0.26 -1.23 16 3 H 0.11 1.33 7.13 -51.93 -0.37 0.96 16 4 C 0.51 8.71 6.60 -10.98 -0.07 8.64 16 5 O -0.54 -11.11 14.56 5.56 0.08 -11.03 16 6 N -0.72 -11.91 5.45 -60.30 -0.33 -12.24 16 7 C 0.10 2.01 6.00 -4.05 -0.02 1.98 16 8 C 0.14 3.10 5.45 -4.05 -0.02 3.08 16 9 N -0.55 -13.20 2.75 -165.67 -0.46 -13.66 16 10 C -0.26 -6.89 8.47 -15.06 -0.13 -7.02 16 11 H 0.07 1.76 6.75 -52.49 -0.35 1.40 16 12 C 0.02 0.43 4.98 -17.43 -0.09 0.35 16 13 N -0.88 -24.26 11.50 55.49 0.64 -23.62 16 14 Si 0.90 21.26 29.60 -169.99 -5.03 16.23 16 15 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 C 0.12 2.54 6.56 -67.93 -0.45 2.09 16 19 C -0.19 -3.86 9.80 -26.73 -0.26 -4.13 16 20 C -0.22 -4.46 10.36 -26.73 -0.28 -4.73 16 21 C -0.14 -1.77 4.41 -104.49 -0.46 -2.23 16 22 C 0.13 1.58 7.25 -39.43 -0.29 1.30 16 23 F -0.13 -1.58 16.19 2.25 0.04 -1.55 16 24 C -0.17 -1.55 10.02 -39.50 -0.40 -1.95 16 25 C -0.06 -0.51 10.04 -39.60 -0.40 -0.91 16 26 C -0.17 -1.68 10.02 -39.51 -0.40 -2.08 16 27 C 0.16 2.13 6.13 -39.43 -0.24 1.89 16 28 F -0.12 -1.76 13.81 2.25 0.03 -1.73 16 29 H 0.07 0.67 7.56 -51.93 -0.39 0.27 16 30 H 0.07 0.80 6.31 -51.93 -0.33 0.47 16 31 H 0.07 0.59 8.14 -51.92 -0.42 0.16 16 32 H 0.40 5.54 7.89 -40.82 -0.32 5.22 16 33 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 34 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.03 0.67 8.07 -51.93 -0.42 0.25 16 36 H 0.10 2.40 5.59 -51.93 -0.29 2.11 16 37 H 0.25 6.75 8.32 -40.82 -0.34 6.41 16 38 H 0.09 1.68 8.14 -51.93 -0.42 1.25 16 39 H 0.10 2.12 6.46 -51.93 -0.34 1.78 16 40 H 0.07 1.28 8.14 -51.92 -0.42 0.85 16 41 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.09 2.15 8.14 -51.93 -0.42 1.72 16 43 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 44 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 45 H 0.14 1.10 8.06 -52.48 -0.42 0.67 16 LS Contribution 378.18 15.07 5.70 5.70 Total: -1.00 -31.25 378.18 -8.93 -40.18 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -6.17 Total: 7.85 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -3.42 Total: -6.13 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: -0.15 Total: -49.52 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.08 Total: -11.03 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.07 Total: -3.28 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.25 -8.93 -40.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731878778.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.661 kcal (2) G-P(sol) polarization free energy of solvation -31.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds