Wall clock time and date at job start Tue Mar 31 2020 21:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.46651 * 2 1 4 4 C 1.50700 * 109.47139 * 239.99647 * 2 1 3 5 5 O 1.21279 * 120.00196 * 239.99745 * 4 2 1 6 6 N 1.34781 * 119.99627 * 59.99766 * 4 2 1 7 7 C 1.46500 * 119.99631 * 179.97438 * 6 4 2 8 8 C 1.52991 * 109.47240 * 180.02562 * 7 6 4 9 9 N 1.46500 * 109.47240 * 179.97438 * 8 7 6 10 10 C 1.36935 * 119.99962 * 269.99848 * 9 8 7 11 11 H 1.07997 * 119.99733 * 140.53754 * 10 9 8 12 12 C 1.38813 * 120.00353 * 320.53485 * 10 9 8 13 13 N 1.31618 * 120.00170 * 340.28504 * 12 10 9 14 14 Si 1.86805 * 120.00118 * 160.27421 * 12 10 9 15 15 H 1.48503 * 109.46865 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.46876 * 120.00204 * 14 12 10 17 17 H 1.48492 * 109.47052 * 240.00590 * 14 12 10 18 18 C 1.46503 * 119.99754 * 90.00576 * 9 8 7 19 19 C 1.52998 * 117.49302 * 183.28867 * 18 9 8 20 20 C 1.52994 * 117.49922 * 114.66606 * 18 9 8 21 21 C 1.50700 * 109.47099 * 119.99357 * 2 1 3 22 22 C 1.38416 * 120.02672 * 239.99951 * 21 2 1 23 23 F 1.35099 * 120.01268 * 0.02562 * 22 21 2 24 24 C 1.38477 * 119.97264 * 179.97438 * 22 21 2 25 25 C 1.38206 * 120.02727 * 0.26962 * 24 22 21 26 26 C 1.38209 * 120.04712 * 359.45984 * 25 24 22 27 27 C 1.38422 * 120.02203 * 59.98086 * 21 2 1 28 28 F 1.35102 * 120.01474 * 359.97438 * 27 21 2 29 29 H 1.08993 * 109.47089 * 60.00558 * 1 2 3 30 30 H 1.09001 * 109.46981 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46999 * 300.00034 * 1 2 3 32 32 H 0.96993 * 119.99960 * 0.02562 * 6 4 2 33 33 H 1.08998 * 109.47251 * 300.00558 * 7 6 4 34 34 H 1.09001 * 109.46670 * 59.99963 * 7 6 4 35 35 H 1.08998 * 109.47358 * 300.00375 * 8 7 6 36 36 H 1.09005 * 109.46948 * 60.00160 * 8 7 6 37 37 H 0.96991 * 120.00272 * 175.01584 * 13 12 10 38 38 H 1.08995 * 115.54739 * 328.98652 * 18 9 8 39 39 H 1.08996 * 117.50602 * 359.97438 * 19 18 9 40 40 H 1.09011 * 117.49809 * 145.01872 * 19 18 9 41 41 H 1.09000 * 117.49625 * 214.97442 * 20 18 9 42 42 H 1.08995 * 117.50518 * 359.97438 * 20 18 9 43 43 H 1.08000 * 119.98400 * 180.02562 * 24 22 21 44 44 H 1.07997 * 119.97691 * 179.70120 * 25 24 22 45 45 H 1.08003 * 119.98465 * 180.25104 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7297 -1.6965 -1.1191 6 7 1.7067 -0.2500 -2.4546 7 6 2.1955 -0.9404 -3.6507 8 6 1.6859 -0.2190 -4.8999 9 7 2.1752 -0.9090 -6.0960 10 6 3.3719 -0.5464 -6.6543 11 1 4.0381 -1.3028 -7.0420 12 6 3.7286 0.7935 -6.7220 13 7 2.8052 1.7261 -6.6234 14 14 5.5193 1.2728 -6.9526 15 1 6.3531 0.0467 -7.0354 16 1 5.6646 2.0553 -8.2063 17 1 5.9634 2.0971 -5.8001 18 6 1.3842 -1.9869 -6.6950 19 6 1.9844 -2.7198 -7.8964 20 6 0.8164 -1.7519 -8.0961 21 6 2.0324 -0.7103 1.2305 22 6 2.8282 -0.0380 2.1419 23 9 3.1546 1.2555 1.9291 24 6 3.2887 -0.6916 3.2726 25 6 2.9586 -2.0162 3.4883 26 6 2.1595 -2.6868 2.5818 27 6 1.6979 -2.0354 1.4504 28 9 0.9205 -2.6925 0.5621 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.1493 0.5388 -2.5435 33 1 3.2855 -0.9400 -3.6505 34 1 1.8326 -1.9682 -3.6507 35 1 0.5959 -0.2190 -4.9003 36 1 2.0492 0.8087 -4.8996 37 1 3.0612 2.6613 -6.5979 38 1 0.7814 -2.5702 -5.9989 39 1 2.9675 -2.3999 -8.2414 40 1 1.7765 -3.7857 -7.9909 41 1 -0.1598 -2.1809 -8.3220 42 1 1.0311 -0.7952 -8.5722 43 1 3.9093 -0.1672 3.9840 44 1 3.3222 -2.5266 4.3679 45 1 1.8988 -3.7208 2.7535 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731878778.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:49 Heat of formation + Delta-G solvation = -73.219756 kcal Electronic energy + Delta-G solvation = -29446.261565 eV Core-core repulsion = 25100.515128 eV Total energy + Delta-G solvation = -4345.746437 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -50.07664 -49.99525 -41.12290 -39.58243 -38.82337 -36.34317 -35.44333 -34.92883 -32.70714 -31.25428 -30.71050 -29.21347 -26.50144 -25.68223 -23.94200 -23.79624 -23.06607 -22.77253 -21.61758 -21.13395 -19.15799 -18.87107 -18.21963 -17.74043 -17.40996 -17.21046 -16.84413 -16.66920 -16.56906 -16.42772 -16.27465 -16.12682 -15.70682 -15.43755 -14.93749 -14.86580 -14.53104 -14.45179 -13.80137 -13.77129 -13.55709 -13.34471 -13.24277 -13.09029 -12.96615 -12.88881 -12.66350 -12.52562 -12.50786 -12.14307 -11.99136 -11.91444 -11.68715 -11.37840 -11.00984 -10.86543 -10.54087 -10.07588 -9.89618 -9.71535 -8.55957 -7.85532 -5.56681 -0.04344 0.01525 1.39302 1.44275 1.53026 1.57874 2.08492 2.42046 2.49304 2.91744 3.12369 3.23900 3.37945 3.41712 3.50098 3.63106 3.85823 3.90879 4.05412 4.20797 4.24513 4.28378 4.33633 4.38135 4.50402 4.58357 4.66940 4.72828 4.77410 4.84043 4.89520 4.93523 5.02063 5.03230 5.06830 5.15983 5.19740 5.20783 5.30842 5.43461 5.54563 5.62883 5.70503 5.79553 6.41813 6.54189 7.09735 7.20829 7.76412 8.28786 9.05065 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014203 B = 0.002962 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.955400 B = 9451.670080 C =10449.448249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.068 4.068 3 H 0.121 0.879 4 C 0.512 3.488 5 O -0.577 6.577 6 N -0.710 5.710 7 C 0.123 3.877 8 C 0.150 3.850 9 N -0.566 5.566 10 C -0.266 4.266 11 H 0.055 0.945 12 C -0.025 4.025 13 N -0.906 5.906 14 Si 0.947 3.053 15 H -0.272 1.272 16 H -0.288 1.288 17 H -0.288 1.288 18 C 0.098 3.902 19 C -0.184 4.184 20 C -0.210 4.210 21 C -0.159 4.159 22 C 0.114 3.886 23 F -0.137 7.137 24 C -0.162 4.162 25 C -0.050 4.050 26 C -0.169 4.169 27 C 0.132 3.868 28 F -0.139 7.139 29 H 0.084 0.916 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.412 0.588 33 H 0.031 0.969 34 H 0.046 0.954 35 H 0.047 0.953 36 H 0.075 0.925 37 H 0.253 0.747 38 H 0.110 0.890 39 H 0.074 0.926 40 H 0.110 0.890 41 H 0.103 0.897 42 H 0.057 0.943 43 H 0.170 0.830 44 H 0.185 0.815 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.656 -4.231 21.858 22.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.089 4.089 3 H 0.139 0.861 4 C 0.298 3.702 5 O -0.457 6.457 6 N -0.361 5.361 7 C -0.003 4.003 8 C 0.024 3.976 9 N -0.283 5.283 10 C -0.396 4.396 11 H 0.073 0.927 12 C -0.223 4.223 13 N -0.549 5.549 14 Si 0.775 3.225 15 H -0.197 1.197 16 H -0.215 1.215 17 H -0.214 1.214 18 C -0.010 4.010 19 C -0.222 4.222 20 C -0.250 4.250 21 C -0.161 4.161 22 C 0.095 3.905 23 F -0.116 7.116 24 C -0.180 4.180 25 C -0.067 4.067 26 C -0.188 4.188 27 C 0.113 3.887 28 F -0.118 7.118 29 H 0.103 0.897 30 H 0.077 0.923 31 H 0.108 0.892 32 H 0.248 0.752 33 H 0.049 0.951 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.092 0.908 37 H 0.063 0.937 38 H 0.127 0.873 39 H 0.092 0.908 40 H 0.128 0.872 41 H 0.121 0.879 42 H 0.076 0.924 43 H 0.187 0.813 44 H 0.202 0.798 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -5.170 -4.715 21.783 22.879 hybrid contribution 0.780 1.030 -1.051 1.666 sum -4.390 -3.685 20.732 21.509 Atomic orbital electron populations 1.21859 0.89469 1.03587 1.04857 1.20198 0.99868 1.00517 0.88363 0.86065 1.20911 0.79681 0.84275 0.85295 1.90663 1.39623 1.28145 1.87277 1.45866 1.53081 1.32146 1.05044 1.21804 0.97724 0.95957 0.84846 1.20856 0.96010 0.97713 0.83052 1.43377 1.20307 1.38560 1.26085 1.19176 0.94349 0.90252 1.35828 0.92735 1.25784 1.00476 0.96485 0.99592 1.70138 1.32486 0.99733 1.52582 0.85544 0.81870 0.77978 0.77093 1.19699 1.21462 1.21414 1.21537 0.97705 0.93705 0.88040 1.23030 0.97720 0.97375 1.04040 1.23233 0.97303 0.99619 1.04871 1.19505 1.03779 0.94731 0.98089 1.17448 0.97797 0.79115 0.96163 1.91490 1.90856 1.34341 1.94910 1.21546 1.03025 0.96502 0.96968 1.21315 0.93628 0.92657 0.99142 1.21570 1.01012 1.02610 0.93569 1.17491 0.93135 0.89479 0.88632 1.91469 1.72019 1.80569 1.67704 0.89715 0.92260 0.89221 0.75209 0.95082 0.93583 0.93433 0.90765 0.93736 0.87275 0.90775 0.87230 0.87878 0.92445 0.81277 0.79813 0.82104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 8.88 71.98 0.64 -2.16 16 2 C -0.07 -1.76 2.79 -12.28 -0.03 -1.80 16 3 H 0.12 2.84 7.13 -2.39 -0.02 2.83 16 4 C 0.51 17.65 6.60 87.66 0.58 18.23 16 5 O -0.58 -24.60 14.56 -3.03 -0.04 -24.64 16 6 N -0.71 -23.97 5.45 -463.07 -2.52 -26.50 16 7 C 0.12 5.09 6.00 86.38 0.52 5.60 16 8 C 0.15 6.69 5.45 86.38 0.47 7.16 16 9 N -0.57 -27.64 2.75 -678.07 -1.86 -29.50 16 10 C -0.27 -14.37 8.47 84.03 0.71 -13.65 16 11 H 0.06 3.02 6.75 -2.91 -0.02 3.00 16 12 C -0.02 -1.35 4.98 84.86 0.42 -0.93 16 13 N -0.91 -50.83 11.50 21.65 0.25 -50.58 16 14 Si 0.95 44.54 29.60 68.60 2.03 46.57 16 15 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 16 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 17 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 18 C 0.10 4.10 6.56 44.99 0.30 4.39 16 19 C -0.18 -7.08 9.80 30.59 0.30 -6.78 16 20 C -0.21 -8.30 10.36 30.59 0.32 -7.98 16 21 C -0.16 -4.09 4.41 -19.78 -0.09 -4.17 16 22 C 0.11 2.56 7.25 22.37 0.16 2.72 16 23 F -0.14 -3.25 16.19 44.97 0.73 -2.52 16 24 C -0.16 -2.51 10.02 22.32 0.22 -2.29 16 25 C -0.05 -0.63 10.04 22.26 0.22 -0.41 16 26 C -0.17 -3.03 10.02 22.32 0.22 -2.81 16 27 C 0.13 3.38 6.13 22.37 0.14 3.51 16 28 F -0.14 -4.16 13.81 44.97 0.62 -3.54 16 29 H 0.08 1.45 7.56 -2.39 -0.02 1.43 16 30 H 0.06 1.33 6.31 -2.39 -0.02 1.32 16 31 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 32 H 0.41 11.46 7.89 -92.71 -0.73 10.73 16 33 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.05 1.94 8.07 -2.39 -0.02 1.92 16 36 H 0.07 3.72 5.59 -2.38 -0.01 3.71 16 37 H 0.25 13.70 8.32 -92.72 -0.77 12.93 16 38 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 39 H 0.07 3.22 6.46 -2.39 -0.02 3.21 16 40 H 0.11 3.45 8.14 -2.38 -0.02 3.43 16 41 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 42 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 43 H 0.17 1.62 8.06 -2.91 -0.02 1.59 16 44 H 0.18 0.78 8.06 -2.91 -0.02 0.75 16 45 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -70.31 378.18 4.59 -65.72 By element: Atomic # 1 Polarization: 26.06 SS G_CDS: 0.29 Total: 26.35 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: 5.10 Total: -1.37 kcal Atomic # 7 Polarization: -102.44 SS G_CDS: -4.14 Total: -106.58 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.04 Total: -24.64 kcal Atomic # 9 Polarization: -7.41 SS G_CDS: 1.35 Total: -6.06 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -70.31 4.59 -65.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731878778.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.499 kcal (2) G-P(sol) polarization free energy of solvation -70.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds