Wall clock time and date at job start Tue Mar 31 2020 20:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46958 * 2 1 4 4 C 1.50700 * 109.47312 * 120.00357 * 2 1 3 5 5 N 1.31237 * 124.05382 * 299.97573 * 4 2 1 6 6 N 1.27336 * 120.03573 * 180.02562 * 5 4 2 7 7 S 1.56640 * 109.73978 * 359.70061 * 6 5 4 8 8 C 1.38243 * 124.05410 * 119.99730 * 4 2 1 9 9 C 1.47172 * 128.47857 * 359.97438 * 8 4 2 10 10 O 1.21626 * 120.00115 * 359.97438 * 9 8 4 11 11 N 1.34777 * 120.00028 * 179.97438 * 9 8 4 12 12 C 1.47019 * 125.65061 * 359.97004 * 11 9 8 13 13 C 1.54322 * 107.27223 * 181.07843 * 12 11 9 14 14 H 1.08995 * 110.72403 * 263.65428 * 13 12 11 15 15 C 1.52999 * 110.71656 * 140.55781 * 13 12 11 16 16 C 1.55154 * 102.94204 * 22.19795 * 13 12 11 17 17 H 1.08999 * 111.00353 * 82.56825 * 16 13 12 18 18 C 1.52999 * 111.00486 * 206.41955 * 16 13 12 19 19 N 1.46505 * 109.47057 * 178.64648 * 18 16 13 20 20 C 1.36935 * 119.99667 * 180.02562 * 19 18 16 21 21 H 1.08001 * 120.00527 * 359.97438 * 20 19 18 22 22 C 1.38816 * 120.00035 * 180.02562 * 20 19 18 23 23 N 1.31623 * 119.99582 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00248 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47172 * 89.99641 * 24 22 20 26 26 H 1.48502 * 109.47348 * 209.99606 * 24 22 20 27 27 H 1.48503 * 109.47101 * 329.99578 * 24 22 20 28 28 C 1.47426 * 125.64729 * 179.97438 * 11 9 8 29 29 H 1.08995 * 109.46971 * 299.99165 * 1 2 3 30 30 H 1.09000 * 109.47236 * 59.99878 * 1 2 3 31 31 H 1.09005 * 109.46646 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46705 * 240.00311 * 2 1 3 33 33 H 1.09004 * 109.47159 * 60.00588 * 3 2 1 34 34 H 1.09000 * 109.46911 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.47505 * 300.00589 * 3 2 1 36 36 H 1.09001 * 109.88389 * 300.50344 * 12 11 9 37 37 H 1.09003 * 109.87977 * 61.66684 * 12 11 9 38 38 H 1.08997 * 109.47290 * 61.46077 * 15 13 12 39 39 H 1.09000 * 109.46958 * 181.45398 * 15 13 12 40 40 H 1.09000 * 109.47467 * 301.45183 * 15 13 12 41 41 H 1.08993 * 109.47274 * 298.64896 * 18 16 13 42 42 H 1.09005 * 109.47002 * 58.65139 * 18 16 13 43 43 H 0.96994 * 120.00157 * 0.02562 * 19 18 16 44 44 H 0.97001 * 119.99867 * 180.02562 * 23 22 20 45 45 H 1.08998 * 110.36718 * 274.68923 * 28 11 9 46 46 H 1.09005 * 110.36600 * 37.01484 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 7 1.7652 -0.3318 2.4582 6 7 2.2311 -0.9899 3.4438 7 16 3.0770 -2.1996 2.9197 8 6 2.8304 -1.8390 1.2011 9 6 3.3444 -2.5669 0.0298 10 8 3.0722 -2.1837 -1.0919 11 7 4.1168 -3.6582 0.2003 12 6 4.5218 -4.2278 1.4937 13 6 5.4186 -5.4480 1.1963 14 1 4.8376 -6.3698 1.2247 15 6 6.5856 -5.5153 2.1834 16 6 5.9304 -5.1612 -0.2401 17 1 6.7855 -4.4855 -0.2225 18 6 6.2766 -6.4613 -0.9687 19 7 6.7245 -6.1541 -2.3293 20 6 7.0897 -7.1674 -3.1750 21 1 7.0480 -8.1929 -2.8388 22 6 7.5146 -6.8764 -4.4641 23 7 7.5660 -5.6265 -4.8736 24 14 8.0135 -8.2584 -5.6174 25 1 6.8257 -8.7201 -6.3796 26 1 9.0473 -7.7655 -6.5627 27 1 8.5642 -9.3885 -4.8268 28 6 4.6955 -4.4783 -0.8795 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.6767 1.9563 0.8901 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 5.0807 -3.4875 2.0661 37 1 3.6404 -4.5430 2.0522 38 1 6.1988 -5.6282 3.1962 39 1 7.2191 -6.3681 1.9394 40 1 7.1704 -4.5978 2.1179 41 1 7.0724 -6.9777 -0.4321 42 1 5.3940 -7.0995 -1.0121 43 1 6.7624 -5.2331 -2.6312 44 1 7.8626 -5.4232 -5.7745 45 1 3.9777 -5.2277 -1.2130 46 1 5.0009 -3.8465 -1.7136 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733557842.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:48 Heat of formation + Delta-G solvation = 38.438430 kcal Electronic energy + Delta-G solvation = -27269.843861 eV Core-core repulsion = 23515.072423 eV Total energy + Delta-G solvation = -3754.771437 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.30854 -40.21244 -38.05577 -35.75129 -34.80089 -33.14270 -31.67207 -31.30776 -29.30754 -27.79418 -27.33748 -26.56305 -25.64257 -23.61724 -22.88679 -21.84145 -21.23208 -20.13765 -19.56646 -18.26469 -17.40147 -17.07365 -16.41718 -16.14237 -15.62316 -15.27398 -14.77486 -14.55604 -14.43912 -14.22240 -13.76634 -13.42484 -13.36406 -13.26238 -13.11472 -12.97023 -12.64274 -12.43994 -12.38514 -12.35117 -12.09057 -11.51493 -11.46889 -11.40684 -11.21422 -11.14451 -10.92910 -10.75130 -10.61633 -10.50316 -10.35462 -10.08289 -10.05434 -9.98679 -9.94613 -9.70186 -8.91804 -8.81226 -6.97229 -5.79197 -3.09003 -0.51119 0.54147 1.23226 1.70767 2.64484 2.79080 3.42135 3.47081 3.48997 3.61873 4.09800 4.25572 4.32267 4.50091 4.66594 4.72786 4.80618 4.92638 4.93116 5.08445 5.14864 5.36443 5.38065 5.47553 5.47940 5.52923 5.60496 5.65052 5.67566 5.68673 5.84815 5.86960 5.91467 6.00789 6.03151 6.05759 6.10588 6.19272 6.29223 6.29945 6.61601 6.73806 7.22404 7.43027 7.66775 7.83836 8.38769 9.50287 10.06109 10.40238 11.43303 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015700 B = 0.002789 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.041156 B =10036.146810 C =11480.846292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.030 4.030 3 C -0.141 4.141 4 C 0.106 3.894 5 N -0.244 5.244 6 N -0.268 5.268 7 S 0.415 5.585 8 C -0.282 4.282 9 C 0.612 3.388 10 O -0.510 6.510 11 N -0.607 5.607 12 C 0.088 3.912 13 C -0.092 4.092 14 H 0.092 0.908 15 C -0.142 4.142 16 C -0.101 4.101 17 H 0.088 0.912 18 C 0.166 3.834 19 N -0.733 5.733 20 C -0.243 4.243 21 H 0.070 0.930 22 C -0.012 4.012 23 N -0.931 5.931 24 Si 0.907 3.093 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.118 3.882 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.123 0.877 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.057 0.943 39 H 0.068 0.932 40 H 0.058 0.942 41 H 0.026 0.974 42 H 0.022 0.978 43 H 0.384 0.616 44 H 0.256 0.744 45 H 0.079 0.921 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.141 8.125 18.234 22.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.052 4.052 3 C -0.199 4.199 4 C -0.041 4.041 5 N -0.110 5.110 6 N -0.248 5.248 7 S 0.553 5.447 8 C -0.423 4.423 9 C 0.397 3.603 10 O -0.386 6.386 11 N -0.340 5.340 12 C -0.036 4.036 13 C -0.112 4.112 14 H 0.110 0.890 15 C -0.200 4.200 16 C -0.121 4.121 17 H 0.106 0.894 18 C 0.038 3.962 19 N -0.377 5.377 20 C -0.374 4.374 21 H 0.088 0.912 22 C -0.208 4.208 23 N -0.579 5.579 24 Si 0.738 3.262 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.208 1.208 28 C -0.003 4.003 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.141 0.859 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.044 0.956 42 H 0.040 0.960 43 H 0.218 0.782 44 H 0.066 0.934 45 H 0.097 0.903 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.296 8.232 19.571 23.596 hybrid contribution 0.182 -0.259 -1.996 2.021 sum -10.114 7.973 17.574 21.788 Atomic orbital electron populations 1.21799 0.93146 1.02222 1.02688 1.20187 0.96658 0.96221 0.92116 1.21800 1.01241 0.94168 1.02680 1.22947 0.94324 0.92469 0.94334 1.70602 1.19822 1.24461 0.96071 1.78784 1.13653 1.07740 1.24633 1.82764 1.39777 1.27414 0.94773 1.27754 1.10509 1.04210 0.99813 1.16003 0.78657 0.79293 0.86301 1.90813 1.58176 1.66254 1.23395 1.48376 1.49384 1.26857 1.09398 1.22413 0.98924 0.96652 0.85628 1.22199 0.96400 0.96815 0.95795 0.88952 1.21775 0.97315 1.02938 0.97956 1.22712 0.96953 0.99241 0.93171 0.89365 1.20576 0.96808 0.92015 0.86781 1.42354 1.79631 1.07184 1.08575 1.19188 1.36687 0.88414 0.93110 0.91157 1.24751 1.02221 0.96247 0.97581 1.69658 1.53471 1.16451 1.18317 0.86198 0.77926 0.81159 0.80925 1.21689 1.21771 1.20776 1.22459 0.94532 0.93734 0.89584 0.91903 0.91309 0.92663 0.85884 0.91906 0.92597 0.91303 0.90872 0.91013 0.92409 0.91299 0.92301 0.95621 0.95996 0.78193 0.93431 0.90312 0.89162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.16 37.16 0.34 -1.00 16 2 C -0.03 -0.33 3.25 -91.77 -0.30 -0.63 16 3 C -0.14 -1.37 9.16 37.16 0.34 -1.03 16 4 C 0.11 1.31 5.53 -82.84 -0.46 0.85 16 5 N -0.24 -3.07 11.51 33.42 0.38 -2.69 16 6 N -0.27 -3.17 12.51 60.35 0.75 -2.42 16 7 S 0.42 3.89 19.63 -107.50 -2.11 1.78 16 8 C -0.28 -3.43 6.66 -35.95 -0.24 -3.67 16 9 C 0.61 8.71 7.84 -12.63 -0.10 8.61 16 10 O -0.51 -8.77 14.80 5.25 0.08 -8.70 16 11 N -0.61 -7.87 3.33 -171.87 -0.57 -8.45 16 12 C 0.09 0.84 4.85 -3.07 -0.01 0.83 16 13 C -0.09 -0.93 3.01 -88.79 -0.27 -1.19 16 14 H 0.09 0.87 8.04 -51.93 -0.42 0.45 16 15 C -0.14 -1.19 9.13 37.16 0.34 -0.85 16 16 C -0.10 -1.42 2.55 -88.46 -0.23 -1.64 16 17 H 0.09 1.30 8.04 -51.93 -0.42 0.88 16 18 C 0.17 2.98 5.71 -4.04 -0.02 2.95 16 19 N -0.73 -17.54 5.45 -59.91 -0.33 -17.86 16 20 C -0.24 -6.57 9.99 -15.06 -0.15 -6.72 16 21 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 22 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 23 N -0.93 -27.74 13.06 55.49 0.72 -27.01 16 24 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 C 0.12 1.78 6.08 -2.52 -0.02 1.76 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.12 1.59 5.49 -51.93 -0.29 1.31 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.60 6.71 -51.93 -0.35 0.25 16 37 H 0.07 0.56 7.16 -51.93 -0.37 0.19 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.50 8.13 -51.93 -0.42 0.07 16 41 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.02 0.40 8.10 -51.93 -0.42 -0.02 16 43 H 0.38 9.77 7.53 -40.82 -0.31 9.46 16 44 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 45 H 0.08 1.24 8.00 -51.93 -0.42 0.82 16 46 H 0.09 1.59 8.04 -51.93 -0.42 1.18 16 LS Contribution 384.25 15.07 5.79 5.79 Total: -1.00 -31.86 384.25 -8.34 -40.20 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -7.17 Total: 4.50 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -0.87 Total: -2.16 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: 0.97 Total: -58.43 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.08 Total: -8.70 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 16 Polarization: 3.89 SS G_CDS: -2.11 Total: 1.78 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.86 -8.34 -40.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733557842.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.638 kcal (2) G-P(sol) polarization free energy of solvation -31.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds