Wall clock time and date at job start Tue Mar 31 2020 20:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46958 * 2 1 4 4 C 1.50700 * 109.47312 * 120.00357 * 2 1 3 5 5 N 1.31237 * 124.05382 * 299.97573 * 4 2 1 6 6 N 1.27336 * 120.03573 * 180.02562 * 5 4 2 7 7 S 1.56640 * 109.73978 * 359.70061 * 6 5 4 8 8 C 1.38243 * 124.05410 * 119.99730 * 4 2 1 9 9 C 1.47172 * 128.47857 * 359.97438 * 8 4 2 10 10 O 1.21626 * 120.00115 * 359.97438 * 9 8 4 11 11 N 1.34777 * 120.00028 * 179.97438 * 9 8 4 12 12 C 1.47019 * 125.65061 * 359.97004 * 11 9 8 13 13 C 1.54322 * 107.27223 * 181.07843 * 12 11 9 14 14 H 1.08995 * 110.72403 * 263.65428 * 13 12 11 15 15 C 1.52999 * 110.71656 * 140.55781 * 13 12 11 16 16 C 1.55154 * 102.94204 * 22.19795 * 13 12 11 17 17 H 1.08999 * 111.00353 * 82.56825 * 16 13 12 18 18 C 1.52999 * 111.00486 * 206.41955 * 16 13 12 19 19 N 1.46505 * 109.47057 * 178.64648 * 18 16 13 20 20 C 1.36935 * 119.99667 * 180.02562 * 19 18 16 21 21 H 1.08001 * 120.00527 * 359.97438 * 20 19 18 22 22 C 1.38816 * 120.00035 * 180.02562 * 20 19 18 23 23 N 1.31623 * 119.99582 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00248 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47172 * 89.99641 * 24 22 20 26 26 H 1.48502 * 109.47348 * 209.99606 * 24 22 20 27 27 H 1.48503 * 109.47101 * 329.99578 * 24 22 20 28 28 C 1.47426 * 125.64729 * 179.97438 * 11 9 8 29 29 H 1.08995 * 109.46971 * 299.99165 * 1 2 3 30 30 H 1.09000 * 109.47236 * 59.99878 * 1 2 3 31 31 H 1.09005 * 109.46646 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46705 * 240.00311 * 2 1 3 33 33 H 1.09004 * 109.47159 * 60.00588 * 3 2 1 34 34 H 1.09000 * 109.46911 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.47505 * 300.00589 * 3 2 1 36 36 H 1.09001 * 109.88389 * 300.50344 * 12 11 9 37 37 H 1.09003 * 109.87977 * 61.66684 * 12 11 9 38 38 H 1.08997 * 109.47290 * 61.46077 * 15 13 12 39 39 H 1.09000 * 109.46958 * 181.45398 * 15 13 12 40 40 H 1.09000 * 109.47467 * 301.45183 * 15 13 12 41 41 H 1.08993 * 109.47274 * 298.64896 * 18 16 13 42 42 H 1.09005 * 109.47002 * 58.65139 * 18 16 13 43 43 H 0.96994 * 120.00157 * 0.02562 * 19 18 16 44 44 H 0.97001 * 119.99867 * 180.02562 * 23 22 20 45 45 H 1.08998 * 110.36718 * 274.68923 * 28 11 9 46 46 H 1.09005 * 110.36600 * 37.01484 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 7 1.7652 -0.3318 2.4582 6 7 2.2311 -0.9899 3.4438 7 16 3.0770 -2.1996 2.9197 8 6 2.8304 -1.8390 1.2011 9 6 3.3444 -2.5669 0.0298 10 8 3.0722 -2.1837 -1.0919 11 7 4.1168 -3.6582 0.2003 12 6 4.5218 -4.2278 1.4937 13 6 5.4186 -5.4480 1.1963 14 1 4.8376 -6.3698 1.2247 15 6 6.5856 -5.5153 2.1834 16 6 5.9304 -5.1612 -0.2401 17 1 6.7855 -4.4855 -0.2225 18 6 6.2766 -6.4613 -0.9687 19 7 6.7245 -6.1541 -2.3293 20 6 7.0897 -7.1674 -3.1750 21 1 7.0480 -8.1929 -2.8388 22 6 7.5146 -6.8764 -4.4641 23 7 7.5660 -5.6265 -4.8736 24 14 8.0135 -8.2584 -5.6174 25 1 6.8257 -8.7201 -6.3796 26 1 9.0473 -7.7655 -6.5627 27 1 8.5642 -9.3885 -4.8268 28 6 4.6955 -4.4783 -0.8795 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.6767 1.9563 0.8901 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 5.0807 -3.4875 2.0661 37 1 3.6404 -4.5430 2.0522 38 1 6.1988 -5.6282 3.1962 39 1 7.2191 -6.3681 1.9394 40 1 7.1704 -4.5978 2.1179 41 1 7.0724 -6.9777 -0.4321 42 1 5.3940 -7.0995 -1.0121 43 1 6.7624 -5.2331 -2.6312 44 1 7.8626 -5.4232 -5.7745 45 1 3.9777 -5.2277 -1.2130 46 1 5.0009 -3.8465 -1.7136 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733557842.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:47 Heat of formation + Delta-G solvation = 17.815117 kcal Electronic energy + Delta-G solvation = -27270.738155 eV Core-core repulsion = 23515.072423 eV Total energy + Delta-G solvation = -3755.665731 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.22621 -41.27230 -39.18112 -36.62315 -36.46406 -34.41596 -33.07337 -32.43809 -30.70971 -28.82924 -28.10201 -27.37366 -27.11697 -25.15863 -24.03521 -22.88036 -22.28177 -21.26870 -20.58122 -19.22723 -19.04711 -18.26700 -17.51394 -17.15634 -16.73753 -16.46194 -16.19295 -15.74920 -15.44139 -15.28036 -15.14812 -14.96816 -14.40173 -14.26772 -14.16069 -14.07206 -13.60410 -13.52880 -13.39509 -13.26760 -13.08281 -12.92798 -12.76886 -12.44635 -12.27560 -12.23708 -12.16805 -12.03574 -11.93420 -11.89298 -11.68169 -11.43248 -11.28740 -10.97130 -10.95349 -10.90644 -10.83481 -9.88644 -8.97358 -7.92849 -5.21552 -1.42243 -0.32860 0.37096 0.76935 1.48817 1.50270 1.58529 1.59230 1.73478 2.57505 2.72093 3.14091 3.36634 3.40766 3.42036 3.59989 3.78001 3.93059 4.10438 4.12282 4.12482 4.18844 4.33735 4.42163 4.51742 4.58294 4.63707 4.75712 4.76522 4.82698 4.86190 4.87733 4.88823 4.99468 5.07845 5.10611 5.18762 5.26283 5.26565 5.35558 5.38742 5.51760 5.54701 6.18566 6.29011 6.53885 6.75652 7.35594 8.12149 8.32991 9.30652 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015700 B = 0.002789 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.041156 B =10036.146810 C =11480.846292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.035 4.035 3 C -0.136 4.136 4 C 0.105 3.895 5 N -0.262 5.262 6 N -0.291 5.291 7 S 0.514 5.486 8 C -0.312 4.312 9 C 0.609 3.391 10 O -0.552 6.552 11 N -0.605 5.605 12 C 0.081 3.919 13 C -0.080 4.080 14 H 0.106 0.894 15 C -0.141 4.141 16 C -0.093 4.093 17 H 0.080 0.920 18 C 0.165 3.835 19 N -0.748 5.748 20 C -0.241 4.241 21 H 0.079 0.921 22 C -0.077 4.077 23 N -0.970 5.970 24 Si 0.971 3.029 25 H -0.289 1.289 26 H -0.298 1.298 27 H -0.266 1.266 28 C 0.123 3.877 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.047 0.953 32 H 0.102 0.898 33 H 0.066 0.934 34 H 0.045 0.955 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.036 0.964 42 H 0.028 0.972 43 H 0.372 0.628 44 H 0.250 0.750 45 H 0.069 0.931 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.389 7.007 21.170 24.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.057 4.057 3 C -0.194 4.194 4 C -0.044 4.044 5 N -0.126 5.126 6 N -0.271 5.271 7 S 0.652 5.348 8 C -0.452 4.452 9 C 0.396 3.604 10 O -0.431 6.431 11 N -0.337 5.337 12 C -0.042 4.042 13 C -0.099 4.099 14 H 0.124 0.876 15 C -0.198 4.198 16 C -0.112 4.112 17 H 0.099 0.901 18 C 0.039 3.961 19 N -0.390 5.390 20 C -0.373 4.373 21 H 0.097 0.903 22 C -0.270 4.270 23 N -0.621 5.621 24 Si 0.800 3.200 25 H -0.217 1.217 26 H -0.225 1.225 27 H -0.191 1.191 28 C 0.001 3.999 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.066 0.934 32 H 0.120 0.880 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.118 0.882 38 H 0.107 0.893 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.054 0.946 42 H 0.046 0.954 43 H 0.204 0.796 44 H 0.058 0.942 45 H 0.088 0.912 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.550 7.076 22.592 25.918 hybrid contribution 0.269 0.020 -2.788 2.801 sum -10.281 7.096 19.803 23.415 Atomic orbital electron populations 1.21766 0.91927 1.02022 1.03572 1.20196 0.97705 0.96677 0.91095 1.21771 1.00579 0.93446 1.03583 1.23106 0.94096 0.92517 0.94656 1.70670 1.20803 1.25152 0.95946 1.78540 1.14448 1.08978 1.25124 1.82264 1.36756 1.24636 0.91191 1.27580 1.11682 1.04785 1.01181 1.16272 0.78323 0.79307 0.86470 1.90790 1.59696 1.67392 1.25267 1.48372 1.48793 1.26384 1.10168 1.22737 1.00284 0.96890 0.84295 1.22196 0.97141 0.97553 0.93026 0.87612 1.21795 0.96412 1.02690 0.98929 1.22535 0.96097 0.97006 0.95582 0.90150 1.20747 0.96849 0.94180 0.84322 1.42615 1.79679 1.06071 1.10684 1.19639 1.34704 0.89441 0.93505 0.90261 1.25564 1.03552 0.98357 0.99478 1.69825 1.55510 1.18502 1.18305 0.85170 0.77172 0.78822 0.78787 1.21674 1.22518 1.19099 1.22195 0.94991 0.93186 0.89575 0.91528 0.89856 0.93382 0.88026 0.91498 0.93567 0.89847 0.88897 0.88200 0.89350 0.91943 0.92361 0.94626 0.95446 0.79604 0.94169 0.91242 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.16 71.98 0.66 -1.88 16 2 C -0.03 -0.79 3.25 -11.54 -0.04 -0.82 16 3 C -0.14 -2.62 9.16 71.98 0.66 -1.96 16 4 C 0.10 2.52 5.53 42.65 0.24 2.76 16 5 N -0.26 -6.27 11.51 -48.19 -0.55 -6.83 16 6 N -0.29 -6.23 12.51 37.02 0.46 -5.77 16 7 S 0.51 8.05 19.63 -56.49 -1.11 6.94 16 8 C -0.31 -7.29 6.66 24.62 0.16 -7.12 16 9 C 0.61 17.52 7.84 86.59 0.68 18.20 16 10 O -0.55 -20.11 14.80 -4.11 -0.06 -20.17 16 11 N -0.60 -15.33 3.33 -815.91 -2.71 -18.05 16 12 C 0.08 1.29 4.85 86.73 0.42 1.71 16 13 C -0.08 -1.35 3.01 -9.61 -0.03 -1.38 16 14 H 0.11 1.59 8.04 -2.39 -0.02 1.57 16 15 C -0.14 -1.82 9.13 71.98 0.66 -1.17 16 16 C -0.09 -2.53 2.55 -9.40 -0.02 -2.56 16 17 H 0.08 2.35 8.04 -2.39 -0.02 2.33 16 18 C 0.17 5.81 5.71 86.38 0.49 6.31 16 19 N -0.75 -36.34 5.45 -343.44 -1.87 -38.21 16 20 C -0.24 -13.07 9.99 84.03 0.84 -12.23 16 21 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 22 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 23 N -0.97 -59.59 13.06 21.65 0.28 -59.31 16 24 Si 0.97 45.74 29.55 68.60 2.03 47.77 16 25 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 26 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 27 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 28 C 0.12 3.80 6.08 86.86 0.53 4.33 16 29 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.10 2.79 5.49 -2.38 -0.01 2.78 16 33 H 0.07 1.22 8.14 -2.38 -0.02 1.21 16 34 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.09 1.15 6.71 -2.39 -0.02 1.13 16 37 H 0.10 1.09 7.16 -2.39 -0.02 1.08 16 38 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.06 0.78 8.13 -2.39 -0.02 0.77 16 41 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.03 0.96 8.10 -2.38 -0.02 0.94 16 43 H 0.37 19.69 7.53 -92.71 -0.70 18.99 16 44 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 45 H 0.07 2.25 8.00 -2.39 -0.02 2.23 16 46 H 0.05 2.03 8.04 -2.38 -0.02 2.01 16 Total: -1.00 -71.59 384.25 2.47 -69.12 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: 0.29 Total: 24.25 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: 5.71 Total: 0.24 kcal Atomic # 7 Polarization: -123.76 SS G_CDS: -4.40 Total: -128.16 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.06 Total: -20.17 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Atomic # 16 Polarization: 8.05 SS G_CDS: -1.11 Total: 6.94 kcal Total: -71.59 2.47 -69.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733557842.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.938 kcal (2) G-P(sol) polarization free energy of solvation -71.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds