Wall clock time and date at job start Tue Mar 31 2020 21:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47101 * 2 1 4 4 N 1.46503 * 109.47327 * 239.99855 * 2 1 3 5 5 C 1.34774 * 120.00105 * 84.72334 * 4 2 1 6 6 O 1.21283 * 119.99891 * 0.27577 * 5 4 2 7 7 C 1.50696 * 120.00523 * 180.28007 * 5 4 2 8 8 S 1.80994 * 109.47663 * 180.02562 * 7 5 4 9 9 C 1.76196 * 100.00085 * 179.97438 * 8 7 5 10 10 H 1.07998 * 120.00277 * 0.02562 * 9 8 7 11 11 C 1.38803 * 120.00013 * 180.02562 * 9 8 7 12 12 N 1.31636 * 119.99859 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00137 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.46989 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47162 * 119.99636 * 13 11 9 16 16 H 1.48495 * 109.47024 * 240.00017 * 13 11 9 17 17 C 1.52998 * 109.47188 * 119.99916 * 2 1 3 18 18 C 1.53940 * 113.73303 * 281.87338 * 17 2 1 19 19 N 1.48193 * 86.09755 * 221.95403 * 18 17 2 20 20 C 1.46905 * 111.06568 * 137.51768 * 19 18 17 21 21 C 1.50701 * 109.46940 * 90.56732 * 20 19 18 22 22 C 1.34675 * 126.59147 * 95.01723 * 21 20 19 23 23 N 1.34123 * 108.02161 * 179.97438 * 22 21 20 24 24 C 1.30498 * 109.25789 * 0.02562 * 23 22 21 25 25 N 1.35047 * 108.69842 * 359.76348 * 24 23 22 26 26 C 1.46498 * 126.39949 * 180.26506 * 25 24 23 27 27 C 1.47958 * 90.79978 * 24.60174 * 19 18 17 28 28 H 1.09005 * 109.47038 * 60.01676 * 1 2 3 29 29 H 1.08998 * 109.47578 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47206 * 300.01997 * 1 2 3 31 31 H 0.97000 * 119.99505 * 265.00514 * 4 2 1 32 32 H 1.09002 * 109.46691 * 300.00484 * 7 5 4 33 33 H 1.09007 * 109.46925 * 59.99417 * 7 5 4 34 34 H 0.96997 * 119.99388 * 179.97438 * 12 11 9 35 35 H 1.09004 * 112.94088 * 53.43639 * 17 2 1 36 36 H 1.08996 * 113.75784 * 336.23443 * 18 17 2 37 37 H 1.08998 * 113.76074 * 107.60627 * 18 17 2 38 38 H 1.09006 * 109.46861 * 210.56201 * 20 19 18 39 39 H 1.08997 * 109.47681 * 330.56943 * 20 19 18 40 40 H 1.07996 * 125.99191 * 359.97409 * 22 21 20 41 41 H 1.07998 * 125.65484 * 180.02562 * 24 23 22 42 42 H 1.09005 * 109.47457 * 270.12230 * 26 25 24 43 43 H 1.09004 * 109.47181 * 30.12477 * 26 25 24 44 44 H 1.08999 * 109.47161 * 150.12233 * 26 25 24 45 45 H 1.09001 * 113.75330 * 221.08493 * 27 19 18 46 46 H 1.09001 * 113.86413 * 89.73056 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1418 -0.0197 -2.3585 6 8 1.8533 1.1570 -2.4130 7 6 2.6382 -0.7316 -3.5905 8 16 2.6936 0.4299 -4.9775 9 6 3.2911 -0.6368 -6.2462 10 1 3.5007 -1.6731 -6.0261 11 6 3.4925 -0.1452 -7.5285 12 7 3.2365 1.1179 -7.7969 13 14 4.1253 -1.2762 -8.8738 14 1 4.3329 -2.6378 -8.3186 15 1 3.1330 -1.3369 -9.9769 16 1 5.4136 -0.7530 -9.3950 17 6 2.0399 -0.7212 1.2492 18 6 1.9731 0.1327 2.5283 19 7 3.3108 -0.4202 2.8460 20 6 4.2038 0.6238 3.3663 21 6 4.0862 0.6829 4.8676 22 6 4.8802 0.0609 5.7601 23 7 4.4430 0.3693 6.9900 24 6 3.4080 1.1583 6.8937 25 7 3.1550 1.3829 5.5862 26 6 2.0829 2.2180 5.0392 27 6 3.5700 -0.6728 1.4114 28 1 -0.3633 0.5136 -0.8902 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5141 0.8898 31 1 2.2489 -1.6318 -1.1525 32 1 3.6381 -1.1238 -3.4053 33 1 1.9643 -1.5539 -3.8313 34 1 3.3776 1.4614 -8.6929 35 1 1.6178 -1.7194 1.3656 36 1 1.9751 1.2063 2.3402 37 1 1.1924 -0.1772 3.2229 38 1 5.2328 0.3919 3.0913 39 1 3.9224 1.5874 2.9417 40 1 5.7214 -0.5747 5.5265 41 1 2.8492 1.5676 7.7222 42 1 1.1909 1.6104 4.8865 43 1 1.8582 3.0243 5.7375 44 1 2.4019 2.6408 4.0865 45 1 4.0627 -1.6252 1.2152 46 1 4.0401 0.1636 0.8942 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734108115.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:23 Heat of formation + Delta-G solvation = 60.066283 kcal Electronic energy + Delta-G solvation = -26180.607316 eV Core-core repulsion = 22426.773733 eV Total energy + Delta-G solvation = -3753.833583 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.40887 -40.62694 -39.00446 -35.37166 -34.34131 -32.51970 -32.45185 -31.07886 -28.67388 -28.12336 -27.43787 -26.42758 -25.51766 -24.88758 -22.18797 -21.71835 -20.49114 -20.13955 -19.94810 -17.91671 -17.43293 -16.69566 -16.57870 -16.27969 -15.73437 -15.31029 -15.11181 -14.85257 -14.82391 -14.65754 -14.10786 -13.80180 -13.54991 -13.36738 -13.29125 -13.22449 -13.15195 -12.98838 -12.77400 -12.65759 -12.14192 -11.99486 -11.76105 -11.31200 -11.12686 -11.08968 -11.04636 -10.98312 -10.77341 -10.23129 -9.89684 -9.83386 -9.46443 -9.30543 -9.10518 -8.91804 -8.63477 -8.26870 -6.53381 -6.24935 -3.95474 1.68442 2.42668 2.88665 2.96122 3.04311 3.19390 3.25490 3.29832 3.52548 3.61637 4.10329 4.17577 4.21675 4.24352 4.36723 4.41945 4.48843 4.60498 4.78042 4.84476 4.91889 4.97257 4.99817 5.10533 5.11914 5.16066 5.19019 5.22729 5.30147 5.43062 5.47606 5.50427 5.63412 5.73575 5.75430 5.85195 5.96027 6.08019 6.10535 6.14132 6.43084 6.54001 6.61324 6.86168 7.57126 7.66957 7.79130 8.32521 8.56828 9.20805 10.82536 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.025457 B = 0.001852 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.619496 B =15113.236774 C =15512.743637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.153 3.847 3 H 0.085 0.915 4 N -0.733 5.733 5 C 0.534 3.466 6 O -0.519 6.519 7 C -0.154 4.154 8 S -0.061 6.061 9 C -0.535 4.535 10 H 0.073 0.927 11 C 0.073 3.927 12 N -0.868 5.868 13 Si 0.919 3.081 14 H -0.271 1.271 15 H -0.280 1.280 16 H -0.280 1.280 17 C -0.121 4.121 18 C 0.010 3.990 19 N -0.472 5.472 20 C 0.095 3.905 21 C -0.011 4.011 22 C -0.013 4.013 23 N -0.495 5.495 24 C 0.178 3.822 25 N -0.457 5.457 26 C 0.069 3.931 27 C 0.010 3.990 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.398 0.602 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.268 0.732 35 H 0.105 0.895 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.052 0.948 40 H 0.168 0.832 41 H 0.203 0.797 42 H 0.078 0.922 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.094 0.906 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.187 -1.651 26.490 26.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.047 3.953 3 H 0.103 0.897 4 N -0.387 5.387 5 C 0.320 3.680 6 O -0.393 6.393 7 C -0.304 4.304 8 S 0.165 5.835 9 C -0.683 4.683 10 H 0.091 0.909 11 C -0.136 4.136 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.206 1.206 17 C -0.140 4.140 18 C -0.119 4.119 19 N -0.194 5.194 20 C -0.034 4.034 21 C -0.126 4.126 22 C -0.162 4.162 23 N -0.213 5.213 24 C -0.104 4.104 25 N -0.140 5.140 26 C -0.074 4.074 27 C -0.119 4.119 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.232 0.768 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.078 0.922 35 H 0.124 0.876 36 H 0.090 0.910 37 H 0.106 0.894 38 H 0.117 0.883 39 H 0.070 0.930 40 H 0.185 0.815 41 H 0.220 0.780 42 H 0.097 0.903 43 H 0.107 0.893 44 H 0.102 0.898 45 H 0.113 0.887 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.350 -0.229 27.421 27.626 hybrid contribution 0.363 -1.467 -2.007 2.512 sum -2.987 -1.696 25.414 25.646 Atomic orbital electron populations 1.22158 0.95213 1.02182 1.02551 1.20880 0.94192 0.96983 0.83231 0.89685 1.46033 1.69378 1.14020 1.09275 1.20309 0.76709 0.87215 0.83761 1.90695 1.48307 1.15810 1.84486 1.23536 1.03709 1.04848 0.98354 1.85381 1.86521 1.12936 0.98623 1.22908 1.51013 0.98174 0.96227 0.90863 1.25000 0.95080 0.95555 0.97986 1.70029 1.45602 1.13259 1.21407 0.86114 0.78516 0.80145 0.80712 1.19600 1.20555 1.20562 1.23278 0.96194 1.00789 0.93783 1.24102 0.93670 0.97967 0.96160 1.68645 1.02025 1.32724 1.16048 1.21013 0.99745 0.94717 0.87962 1.20971 0.95104 1.02003 0.94509 1.22041 1.02508 1.03969 0.87656 1.70282 1.10861 1.14882 1.25284 1.24905 0.98492 1.01634 0.85376 1.45269 1.24446 1.36854 1.07464 1.22104 0.89431 0.94883 1.00935 1.23973 0.96404 1.03060 0.88434 0.91572 0.92430 0.92070 0.76809 0.89243 0.89243 0.92233 0.87638 0.91030 0.89362 0.88262 0.92976 0.81501 0.78027 0.90312 0.89301 0.89849 0.88741 0.90562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.44 37.15 0.35 -1.22 16 2 C 0.15 1.52 2.29 -67.93 -0.16 1.36 16 3 H 0.09 1.01 7.49 -51.93 -0.39 0.62 16 4 N -0.73 -8.67 4.95 -53.81 -0.27 -8.94 16 5 C 0.53 9.26 7.81 -10.99 -0.09 9.18 16 6 O -0.52 -11.08 15.53 5.55 0.09 -10.99 16 7 C -0.15 -2.97 6.16 36.00 0.22 -2.75 16 8 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 9 C -0.53 -15.02 9.50 30.94 0.29 -14.72 16 10 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 11 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 12 N -0.87 -25.87 13.22 55.49 0.73 -25.14 16 13 Si 0.92 21.17 29.55 -169.99 -5.02 16.15 16 14 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 C -0.12 -0.89 3.35 -89.69 -0.30 -1.19 16 18 C 0.01 0.07 6.67 -2.63 -0.02 0.05 16 19 N -0.47 -3.73 6.14 -239.51 -1.47 -5.20 16 20 C 0.09 0.72 5.04 -4.97 -0.03 0.70 16 21 C -0.01 -0.10 6.51 -81.60 -0.53 -0.63 16 22 C -0.01 -0.14 11.79 -17.81 -0.21 -0.35 16 23 N -0.50 -5.66 11.25 -14.67 -0.17 -5.83 16 24 C 0.18 1.49 12.56 -90.37 -1.14 0.35 16 25 N -0.46 -3.42 3.15 -121.36 -0.38 -3.81 16 26 C 0.07 0.27 10.24 59.85 0.61 0.89 16 27 C 0.01 0.07 7.38 -2.76 -0.02 0.05 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 31 H 0.40 3.68 8.60 -40.82 -0.35 3.32 16 32 H 0.09 1.59 8.14 -51.91 -0.42 1.17 16 33 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 34 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.44 6.95 -51.93 -0.36 0.08 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.10 0.71 8.08 -51.93 -0.42 0.29 16 39 H 0.05 0.37 6.62 -51.93 -0.34 0.02 16 40 H 0.17 1.51 8.06 -52.49 -0.42 1.09 16 41 H 0.20 0.93 8.06 -52.49 -0.42 0.51 16 42 H 0.08 0.26 8.10 -51.93 -0.42 -0.16 16 43 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 44 H 0.08 0.31 6.92 -51.93 -0.36 -0.05 16 45 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.08 0.65 7.88 -51.93 -0.41 0.24 16 LS Contribution 396.00 15.07 5.97 5.97 Total: -1.00 -36.49 396.00 -11.08 -47.56 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -7.25 Total: 0.38 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -1.10 Total: -6.31 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: -1.55 Total: -48.92 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.49 -11.08 -47.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734108115.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.628 kcal (2) G-P(sol) polarization free energy of solvation -36.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds