Wall clock time and date at job start Tue Mar 31 2020 21:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47101 * 2 1 4 4 N 1.46503 * 109.47327 * 239.99855 * 2 1 3 5 5 C 1.34774 * 120.00105 * 84.72334 * 4 2 1 6 6 O 1.21283 * 119.99891 * 0.27577 * 5 4 2 7 7 C 1.50696 * 120.00523 * 180.28007 * 5 4 2 8 8 S 1.80994 * 109.47663 * 180.02562 * 7 5 4 9 9 C 1.76196 * 100.00085 * 179.97438 * 8 7 5 10 10 H 1.07998 * 120.00277 * 0.02562 * 9 8 7 11 11 C 1.38803 * 120.00013 * 180.02562 * 9 8 7 12 12 N 1.31636 * 119.99859 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00137 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.46989 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47162 * 119.99636 * 13 11 9 16 16 H 1.48495 * 109.47024 * 240.00017 * 13 11 9 17 17 C 1.52998 * 109.47188 * 119.99916 * 2 1 3 18 18 C 1.53940 * 113.73303 * 281.87338 * 17 2 1 19 19 N 1.48193 * 86.09755 * 221.95403 * 18 17 2 20 20 C 1.46905 * 111.06568 * 137.51768 * 19 18 17 21 21 C 1.50701 * 109.46940 * 90.56732 * 20 19 18 22 22 C 1.34675 * 126.59147 * 95.01723 * 21 20 19 23 23 N 1.34123 * 108.02161 * 179.97438 * 22 21 20 24 24 C 1.30498 * 109.25789 * 0.02562 * 23 22 21 25 25 N 1.35047 * 108.69842 * 359.76348 * 24 23 22 26 26 C 1.46498 * 126.39949 * 180.26506 * 25 24 23 27 27 C 1.47958 * 90.79978 * 24.60174 * 19 18 17 28 28 H 1.09005 * 109.47038 * 60.01676 * 1 2 3 29 29 H 1.08998 * 109.47578 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47206 * 300.01997 * 1 2 3 31 31 H 0.97000 * 119.99505 * 265.00514 * 4 2 1 32 32 H 1.09002 * 109.46691 * 300.00484 * 7 5 4 33 33 H 1.09007 * 109.46925 * 59.99417 * 7 5 4 34 34 H 0.96997 * 119.99388 * 179.97438 * 12 11 9 35 35 H 1.09004 * 112.94088 * 53.43639 * 17 2 1 36 36 H 1.08996 * 113.75784 * 336.23443 * 18 17 2 37 37 H 1.08998 * 113.76074 * 107.60627 * 18 17 2 38 38 H 1.09006 * 109.46861 * 210.56201 * 20 19 18 39 39 H 1.08997 * 109.47681 * 330.56943 * 20 19 18 40 40 H 1.07996 * 125.99191 * 359.97409 * 22 21 20 41 41 H 1.07998 * 125.65484 * 180.02562 * 24 23 22 42 42 H 1.09005 * 109.47457 * 270.12230 * 26 25 24 43 43 H 1.09004 * 109.47181 * 30.12477 * 26 25 24 44 44 H 1.08999 * 109.47161 * 150.12233 * 26 25 24 45 45 H 1.09001 * 113.75330 * 221.08493 * 27 19 18 46 46 H 1.09001 * 113.86413 * 89.73056 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1418 -0.0197 -2.3585 6 8 1.8533 1.1570 -2.4130 7 6 2.6382 -0.7316 -3.5905 8 16 2.6936 0.4299 -4.9775 9 6 3.2911 -0.6368 -6.2462 10 1 3.5007 -1.6731 -6.0261 11 6 3.4925 -0.1452 -7.5285 12 7 3.2365 1.1179 -7.7969 13 14 4.1253 -1.2762 -8.8738 14 1 4.3329 -2.6378 -8.3186 15 1 3.1330 -1.3369 -9.9769 16 1 5.4136 -0.7530 -9.3950 17 6 2.0399 -0.7212 1.2492 18 6 1.9731 0.1327 2.5283 19 7 3.3108 -0.4202 2.8460 20 6 4.2038 0.6238 3.3663 21 6 4.0862 0.6829 4.8676 22 6 4.8802 0.0609 5.7601 23 7 4.4430 0.3693 6.9900 24 6 3.4080 1.1583 6.8937 25 7 3.1550 1.3829 5.5862 26 6 2.0829 2.2180 5.0392 27 6 3.5700 -0.6728 1.4114 28 1 -0.3633 0.5136 -0.8902 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5141 0.8898 31 1 2.2489 -1.6318 -1.1525 32 1 3.6381 -1.1238 -3.4053 33 1 1.9643 -1.5539 -3.8313 34 1 3.3776 1.4614 -8.6929 35 1 1.6178 -1.7194 1.3656 36 1 1.9751 1.2063 2.3402 37 1 1.1924 -0.1772 3.2229 38 1 5.2328 0.3919 3.0913 39 1 3.9224 1.5874 2.9417 40 1 5.7214 -0.5747 5.5265 41 1 2.8492 1.5676 7.7222 42 1 1.1909 1.6104 4.8865 43 1 1.8582 3.0243 5.7375 44 1 2.4019 2.6408 4.0865 45 1 4.0627 -1.6252 1.2152 46 1 4.0401 0.1636 0.8942 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734108115.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:22 Heat of formation + Delta-G solvation = 33.966622 kcal Electronic energy + Delta-G solvation = -26181.739082 eV Core-core repulsion = 22426.773733 eV Total energy + Delta-G solvation = -3754.965349 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.02454 -41.39338 -40.20481 -36.41401 -34.90578 -34.58309 -33.36656 -32.07822 -29.98146 -28.79997 -27.88365 -27.66318 -26.99973 -25.59540 -23.05794 -22.34520 -21.60637 -20.81666 -20.70563 -19.76650 -18.10355 -17.80622 -17.51371 -17.09004 -16.88049 -16.45297 -16.29782 -16.01382 -15.92975 -15.53977 -15.28942 -14.69102 -14.59754 -14.42467 -14.26158 -13.90738 -13.88371 -13.75524 -13.69771 -13.38960 -13.21140 -13.15381 -12.92363 -12.90464 -12.57848 -12.49042 -11.97547 -11.86477 -11.68961 -11.65107 -11.15872 -10.91714 -10.88199 -10.48859 -10.26315 -10.16785 -9.80419 -9.29484 -8.65647 -8.35040 -6.12288 1.07044 1.28009 1.41101 1.47762 1.58634 1.65444 1.93434 2.19882 2.24973 2.29968 2.92845 2.99341 3.30883 3.44964 3.57540 3.74079 3.88443 3.91459 3.97554 3.99257 4.17111 4.24679 4.30503 4.31790 4.36176 4.42303 4.47571 4.50674 4.53527 4.58699 4.64143 4.75647 4.77309 4.83079 4.86229 4.99904 5.16499 5.20786 5.34736 5.42475 5.46809 5.55994 5.78246 5.94964 6.20113 6.32527 6.55683 7.06843 7.14344 7.29526 8.74293 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.025457 B = 0.001852 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.619496 B =15113.236774 C =15512.743637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.155 3.845 3 H 0.066 0.934 4 N -0.707 5.707 5 C 0.537 3.463 6 O -0.565 6.565 7 C -0.131 4.131 8 S -0.151 6.151 9 C -0.545 4.545 10 H 0.082 0.918 11 C 0.013 3.987 12 N -0.911 5.911 13 Si 0.998 3.002 14 H -0.257 1.257 15 H -0.274 1.274 16 H -0.274 1.274 17 C -0.107 4.107 18 C 0.016 3.984 19 N -0.481 5.481 20 C 0.099 3.901 21 C -0.012 4.012 22 C -0.043 4.043 23 N -0.539 5.539 24 C 0.178 3.822 25 N -0.455 5.455 26 C 0.062 3.938 27 C 0.009 3.991 28 H 0.031 0.969 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.415 0.585 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.271 0.729 35 H 0.120 0.880 36 H 0.078 0.922 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.059 0.941 40 H 0.167 0.833 41 H 0.236 0.764 42 H 0.089 0.911 43 H 0.112 0.888 44 H 0.085 0.915 45 H 0.100 0.900 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.794 -3.321 27.572 28.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.050 3.950 3 H 0.084 0.916 4 N -0.361 5.361 5 C 0.323 3.677 6 O -0.443 6.443 7 C -0.282 4.282 8 S 0.076 5.924 9 C -0.693 4.693 10 H 0.100 0.900 11 C -0.192 4.192 12 N -0.548 5.548 13 Si 0.820 3.180 14 H -0.180 1.180 15 H -0.200 1.200 16 H -0.200 1.200 17 C -0.127 4.127 18 C -0.113 4.113 19 N -0.203 5.203 20 C -0.030 4.030 21 C -0.128 4.128 22 C -0.191 4.191 23 N -0.257 5.257 24 C -0.104 4.104 25 N -0.138 5.138 26 C -0.079 4.079 27 C -0.119 4.119 28 H 0.051 0.949 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.252 0.748 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.080 0.920 35 H 0.138 0.862 36 H 0.096 0.904 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.077 0.923 40 H 0.185 0.815 41 H 0.252 0.748 42 H 0.108 0.892 43 H 0.130 0.870 44 H 0.104 0.896 45 H 0.118 0.882 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.970 -1.937 28.543 28.883 hybrid contribution 0.505 -0.945 -2.184 2.433 sum -3.466 -2.882 26.359 26.742 Atomic orbital electron populations 1.22119 0.94538 1.02939 1.02080 1.21002 0.94611 0.96239 0.83177 0.91616 1.45794 1.67450 1.14647 1.08166 1.19979 0.76604 0.86544 0.84589 1.90687 1.50687 1.17732 1.85234 1.23387 1.05529 1.03163 0.96137 1.85542 1.86885 1.17333 1.02633 1.23243 1.50848 0.98474 0.96743 0.89952 1.26116 0.95102 0.97193 1.00769 1.70189 1.46939 1.15482 1.22163 0.84920 0.77826 0.78269 0.77034 1.18029 1.19975 1.19989 1.23187 0.95800 1.01229 0.92449 1.24142 0.93300 0.98263 0.95628 1.68647 1.02616 1.33087 1.15975 1.20991 0.99854 0.94972 0.87226 1.21095 0.95119 1.01716 0.94904 1.22230 1.03499 1.05225 0.88138 1.70227 1.12683 1.16756 1.26081 1.25542 0.97750 1.00558 0.86547 1.45472 1.24608 1.36531 1.07155 1.22385 0.88627 0.95266 1.01622 1.23965 0.96583 1.02996 0.88378 0.94945 0.91010 0.89673 0.74796 0.87298 0.87427 0.92030 0.86230 0.90379 0.88364 0.88278 0.92335 0.81547 0.74839 0.89210 0.86998 0.89613 0.88191 0.91515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 9.44 71.98 0.68 -2.07 16 2 C 0.15 2.79 2.29 44.99 0.10 2.89 16 3 H 0.07 1.51 7.49 -2.39 -0.02 1.49 16 4 N -0.71 -15.43 4.95 -442.55 -2.19 -17.61 16 5 C 0.54 18.35 7.81 87.66 0.68 19.04 16 6 O -0.57 -24.66 15.53 -3.04 -0.05 -24.70 16 7 C -0.13 -4.95 6.16 71.23 0.44 -4.51 16 8 S -0.15 -8.21 20.57 -56.49 -1.16 -9.38 16 9 C -0.55 -30.71 9.50 67.96 0.65 -30.07 16 10 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 11 C 0.01 0.73 5.49 84.86 0.47 1.19 16 12 N -0.91 -55.46 13.22 21.65 0.29 -55.17 16 13 Si 1.00 43.16 29.55 68.60 2.03 45.19 16 14 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 15 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 16 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 17 C -0.11 -1.27 3.35 -10.15 -0.03 -1.31 16 18 C 0.02 0.17 6.67 86.37 0.58 0.74 16 19 N -0.48 -6.64 6.14 -911.69 -5.60 -12.24 16 20 C 0.10 1.38 5.04 85.56 0.43 1.81 16 21 C -0.01 -0.21 6.51 40.95 0.27 0.05 16 22 C -0.04 -0.90 11.79 83.53 0.98 0.08 16 23 N -0.54 -12.22 11.25 -200.31 -2.25 -14.48 16 24 C 0.18 2.73 12.56 180.26 2.26 4.99 16 25 N -0.46 -6.01 3.15 -537.88 -1.70 -7.71 16 26 C 0.06 0.32 10.24 127.77 1.31 1.63 16 27 C 0.01 0.12 7.38 86.41 0.64 0.76 16 28 H 0.03 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.08 1.07 8.08 -2.39 -0.02 1.05 16 31 H 0.42 6.42 8.60 -92.71 -0.80 5.62 16 32 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 33 H 0.11 3.68 8.14 -2.39 -0.02 3.66 16 34 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 35 H 0.12 1.19 8.14 -2.38 -0.02 1.17 16 36 H 0.08 0.75 6.95 -2.39 -0.02 0.74 16 37 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.10 1.36 8.08 -2.38 -0.02 1.34 16 39 H 0.06 0.74 6.62 -2.39 -0.02 0.72 16 40 H 0.17 3.19 8.06 -2.91 -0.02 3.17 16 41 H 0.24 1.60 8.06 -2.91 -0.02 1.57 16 42 H 0.09 0.30 8.10 -2.38 -0.02 0.28 16 43 H 0.11 0.08 8.14 -2.38 -0.02 0.06 16 44 H 0.09 0.43 6.92 -2.39 -0.02 0.42 16 45 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.07 1.04 7.88 -2.39 -0.02 1.02 16 Total: -1.00 -82.50 396.00 -1.00 -83.50 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: 0.18 Total: 17.35 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: 9.45 Total: -4.75 kcal Atomic # 7 Polarization: -95.75 SS G_CDS: -11.45 Total: -107.20 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.05 Total: -24.70 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 16 Polarization: -8.21 SS G_CDS: -1.16 Total: -9.38 kcal Total: -82.50 -1.00 -83.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734108115.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.465 kcal (2) G-P(sol) polarization free energy of solvation -82.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds