Wall clock time and date at job start Tue Mar 31 2020 21:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.47585 * 2 1 4 4 N 1.46500 * 109.47574 * 239.99379 * 2 1 3 5 5 C 1.34777 * 119.99651 * 85.00531 * 4 2 1 6 6 O 1.21281 * 120.00356 * 359.97438 * 5 4 2 7 7 C 1.50697 * 119.99773 * 180.02562 * 5 4 2 8 8 S 1.80995 * 109.47082 * 179.97438 * 7 5 4 9 9 C 1.76205 * 100.00100 * 179.97438 * 8 7 5 10 10 H 1.07993 * 119.99959 * 0.02562 * 9 8 7 11 11 C 1.38803 * 119.99790 * 179.97438 * 9 8 7 12 12 N 1.31623 * 120.00385 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99642 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46901 * 60.00475 * 13 11 9 15 15 H 1.48505 * 109.47203 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47530 * 300.00786 * 13 11 9 17 17 C 1.53006 * 109.46756 * 119.99649 * 2 1 3 18 18 C 1.53938 * 113.73586 * 282.05708 * 17 2 1 19 19 N 1.48181 * 86.10106 * 221.95847 * 18 17 2 20 20 C 1.46900 * 111.07093 * 137.52182 * 19 18 17 21 21 C 1.50705 * 109.47198 * 70.56440 * 20 19 18 22 22 C 1.39867 * 125.89530 * 94.71556 * 21 20 19 23 23 C 1.35320 * 107.91494 * 179.86272 * 22 21 20 24 24 N 1.34943 * 107.74786 * 0.39560 * 23 22 21 25 25 C 1.46499 * 126.03944 * 179.74940 * 24 23 22 26 26 N 1.30837 * 125.89701 * 275.02480 * 21 20 19 27 27 C 1.47960 * 90.80492 * 24.59840 * 19 18 17 28 28 H 1.09010 * 109.46848 * 55.99272 * 1 2 3 29 29 H 1.08998 * 109.47697 * 175.99223 * 1 2 3 30 30 H 1.08998 * 109.47507 * 295.99928 * 1 2 3 31 31 H 0.96996 * 120.00034 * 265.00371 * 4 2 1 32 32 H 1.09002 * 109.47269 * 299.99334 * 7 5 4 33 33 H 1.09004 * 109.47854 * 59.99431 * 7 5 4 34 34 H 0.96998 * 120.00224 * 180.02562 * 12 11 9 35 35 H 1.08998 * 112.93711 * 53.62286 * 17 2 1 36 36 H 1.09001 * 113.75794 * 336.23861 * 18 17 2 37 37 H 1.08995 * 113.75712 * 107.59947 * 18 17 2 38 38 H 1.09009 * 109.47091 * 190.56201 * 20 19 18 39 39 H 1.09000 * 109.47129 * 310.56405 * 20 19 18 40 40 H 1.07997 * 126.04458 * 359.97438 * 22 21 20 41 41 H 1.08000 * 126.12721 * 180.14079 * 23 22 21 42 42 H 1.09001 * 109.47120 * 269.97003 * 25 24 23 43 43 H 1.08997 * 109.46935 * 29.97311 * 25 24 23 44 44 H 1.09004 * 109.47403 * 149.97589 * 25 24 23 45 45 H 1.08995 * 113.76510 * 221.08527 * 27 19 18 46 46 H 1.08998 * 113.85583 * 89.72724 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1472 -0.0184 -2.3570 6 8 1.8584 1.1583 -2.4117 7 6 2.6491 -0.7290 -3.5875 8 16 2.7096 0.4338 -4.9732 9 6 3.3130 -0.6315 -6.2405 10 1 3.5223 -1.6679 -6.0204 11 6 3.5184 -0.1388 -7.5218 12 7 3.2628 1.1242 -7.7901 13 14 4.1588 -1.2680 -8.8650 14 1 3.2087 -2.3925 -9.0610 15 1 4.2911 -0.5047 -10.1320 16 1 5.4858 -1.8045 -8.4698 17 6 2.0398 -0.7212 1.2494 18 6 1.9688 0.1312 2.5292 19 7 3.3074 -0.4185 2.8484 20 6 4.1968 0.6272 3.3713 21 6 3.7438 1.0280 4.7517 22 6 4.2346 0.5153 5.9569 23 6 3.5780 1.1292 6.9684 24 7 2.6967 1.9930 6.4225 25 6 1.7744 2.8626 7.1568 26 7 2.8196 1.9114 5.0294 27 6 3.5695 -0.6691 1.4139 28 1 -0.3633 0.5748 -0.8520 29 1 -0.3634 -1.0251 -0.0718 30 1 -0.3634 0.4505 0.9236 31 1 2.2490 -1.6318 -1.1524 32 1 3.6482 -1.1215 -3.3983 33 1 1.9763 -1.5509 -3.8324 34 1 3.4060 1.4683 -8.6856 35 1 1.6201 -1.7206 1.3640 36 1 1.9683 1.2050 2.3422 37 1 1.1877 -0.1814 3.2222 38 1 5.2168 0.2457 3.4201 39 1 4.1645 1.4947 2.7122 40 1 5.0030 -0.2363 6.0617 41 1 3.7291 0.9556 8.0236 42 1 0.8324 2.3387 7.3189 43 1 2.2131 3.1276 8.1188 44 1 1.5914 3.7686 6.5790 45 1 4.0651 -1.6198 1.2175 46 1 4.0383 0.1692 0.8985 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734109464.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:16 Heat of formation + Delta-G solvation = 76.526778 kcal Electronic energy + Delta-G solvation = -25869.476213 eV Core-core repulsion = 22116.356410 eV Total energy + Delta-G solvation = -3753.119802 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.53150 -40.40198 -38.87609 -35.30414 -33.92030 -32.40926 -31.64830 -30.54358 -29.88106 -28.46533 -26.84475 -26.22932 -25.45793 -24.60777 -22.02578 -21.46286 -20.35415 -19.89201 -19.72660 -17.81103 -17.31687 -16.47114 -16.45068 -16.02402 -15.63727 -15.11431 -15.00760 -14.79159 -14.75669 -14.26368 -14.10985 -13.89799 -13.41897 -13.16881 -13.04596 -12.96795 -12.81340 -12.72983 -12.61938 -12.52701 -12.03634 -11.89563 -11.63167 -11.14274 -11.03049 -11.02303 -10.96587 -10.82191 -10.74075 -10.73383 -9.80074 -9.63216 -9.33827 -9.09977 -9.03848 -8.85100 -8.78102 -8.21177 -6.47461 -6.19469 -3.89856 1.56222 2.17464 2.45176 3.05318 3.14797 3.25032 3.28968 3.32544 3.70918 3.76081 4.11245 4.22715 4.27593 4.42418 4.49499 4.60316 4.71805 4.83037 4.97505 5.00641 5.07539 5.15531 5.17187 5.22922 5.28022 5.33025 5.40465 5.42649 5.51236 5.55166 5.59965 5.62741 5.70550 5.75526 5.91732 5.92795 6.03219 6.12581 6.17569 6.28119 6.32658 6.67614 6.70915 6.76341 7.42172 7.61333 7.78547 8.37118 8.67717 9.25690 10.87878 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.026573 B = 0.001776 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.448716 B =15762.198791 C =15985.690019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.153 3.847 3 H 0.086 0.914 4 N -0.733 5.733 5 C 0.533 3.467 6 O -0.519 6.519 7 C -0.153 4.153 8 S -0.061 6.061 9 C -0.536 4.536 10 H 0.072 0.928 11 C 0.074 3.926 12 N -0.868 5.868 13 Si 0.918 3.082 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.274 1.274 17 C -0.124 4.124 18 C 0.022 3.978 19 N -0.474 5.474 20 C 0.100 3.900 21 C 0.082 3.918 22 C -0.256 4.256 23 C 0.048 3.952 24 N -0.377 5.377 25 C 0.102 3.898 26 N -0.289 5.289 27 C 0.010 3.990 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.398 0.602 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.269 0.731 35 H 0.103 0.897 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.058 0.942 40 H 0.147 0.853 41 H 0.172 0.828 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.130 -3.158 31.907 32.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.047 3.953 3 H 0.104 0.896 4 N -0.386 5.386 5 C 0.319 3.681 6 O -0.393 6.393 7 C -0.304 4.304 8 S 0.166 5.834 9 C -0.684 4.684 10 H 0.090 0.910 11 C -0.136 4.136 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.199 1.199 15 H -0.208 1.208 16 H -0.199 1.199 17 C -0.143 4.143 18 C -0.107 4.107 19 N -0.197 5.197 20 C -0.030 4.030 21 C -0.084 4.084 22 C -0.285 4.285 23 C -0.097 4.097 24 N -0.160 5.160 25 C -0.040 4.040 26 N -0.112 5.112 27 C -0.118 4.118 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.231 0.769 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.078 0.922 35 H 0.122 0.878 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.114 0.886 39 H 0.076 0.924 40 H 0.165 0.835 41 H 0.190 0.810 42 H 0.092 0.908 43 H 0.105 0.895 44 H 0.107 0.893 45 H 0.111 0.889 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.472 -0.613 31.795 31.897 hybrid contribution 1.396 -2.389 -0.716 2.858 sum -1.076 -3.002 31.079 31.243 Atomic orbital electron populations 1.22150 0.95285 1.02178 1.02450 1.20892 0.94170 0.97084 0.83138 0.89582 1.46037 1.69287 1.13905 1.09413 1.20294 0.76818 0.87217 0.83763 1.90697 1.48371 1.15818 1.84396 1.23534 1.03648 1.04824 0.98408 1.85390 1.86297 1.12935 0.98777 1.22835 1.51022 0.98157 0.96410 0.90988 1.24986 0.95109 0.95526 0.97935 1.70005 1.45515 1.13232 1.21562 0.86233 0.79318 0.80027 0.79967 1.19949 1.20827 1.19949 1.23310 0.96100 1.00792 0.94130 1.23892 0.93052 0.98439 0.95297 1.68640 1.02506 1.32646 1.15906 1.20987 0.97997 0.94563 0.89432 1.22047 0.95143 0.95081 0.96156 1.21376 1.08248 1.08068 0.90838 1.22520 0.93436 0.93917 0.99874 1.48491 1.30536 1.32518 1.04449 1.21849 0.92217 0.94170 0.95724 1.77336 1.20977 1.22287 0.90618 1.23964 0.96425 1.02890 0.88548 0.91685 0.92499 0.91965 0.76888 0.89272 0.89289 0.92152 0.87843 0.90484 0.89645 0.88560 0.92394 0.83518 0.81035 0.90763 0.89545 0.89277 0.88906 0.90576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 9.46 37.15 0.35 -1.50 16 2 C 0.15 1.79 2.29 -67.93 -0.16 1.64 16 3 H 0.09 1.21 7.49 -51.93 -0.39 0.82 16 4 N -0.73 -9.59 4.95 -53.81 -0.27 -9.86 16 5 C 0.53 9.84 7.81 -10.99 -0.09 9.76 16 6 O -0.52 -11.72 15.52 5.56 0.09 -11.63 16 7 C -0.15 -3.09 6.16 36.00 0.22 -2.86 16 8 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 9 C -0.54 -15.33 9.50 30.94 0.29 -15.03 16 10 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 11 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 12 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 13 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 14 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 17 C -0.12 -1.14 3.35 -89.68 -0.30 -1.44 16 18 C 0.02 0.22 6.78 -2.64 -0.02 0.20 16 19 N -0.47 -4.67 6.25 -239.53 -1.50 -6.17 16 20 C 0.10 0.97 5.39 -4.97 -0.03 0.94 16 21 C 0.08 0.87 6.28 -82.40 -0.52 0.36 16 22 C -0.26 -2.28 10.74 -40.01 -0.43 -2.71 16 23 C 0.05 0.35 11.49 -17.22 -0.20 0.16 16 24 N -0.38 -3.24 4.01 -68.16 -0.27 -3.52 16 25 C 0.10 0.45 11.47 59.85 0.69 1.13 16 26 N -0.29 -3.31 12.46 33.67 0.42 -2.89 16 27 C 0.01 0.10 7.41 -2.76 -0.02 0.08 16 28 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.61 7.99 -51.93 -0.42 0.20 16 31 H 0.40 4.08 8.60 -40.82 -0.35 3.73 16 32 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 33 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 34 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 35 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 0.83 7.69 -51.93 -0.40 0.43 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.10 0.80 8.14 -51.92 -0.42 0.37 16 39 H 0.06 0.59 7.70 -51.93 -0.40 0.19 16 40 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 41 H 0.17 0.60 8.06 -52.49 -0.42 0.18 16 42 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 44 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.08 0.78 7.75 -51.93 -0.40 0.37 16 LS Contribution 400.49 15.07 6.04 6.04 Total: -1.00 -36.77 400.49 -9.69 -46.46 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -7.40 Total: 1.80 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -0.29 Total: -7.27 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: -0.88 Total: -47.98 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.09 Total: -11.63 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.77 -9.69 -46.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734109464.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.988 kcal (2) G-P(sol) polarization free energy of solvation -36.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds