Wall clock time and date at job start Tue Mar 31 2020 21:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.47585 * 2 1 4 4 N 1.46500 * 109.47574 * 239.99379 * 2 1 3 5 5 C 1.34777 * 119.99651 * 85.00531 * 4 2 1 6 6 O 1.21281 * 120.00356 * 359.97438 * 5 4 2 7 7 C 1.50697 * 119.99773 * 180.02562 * 5 4 2 8 8 S 1.80995 * 109.47082 * 179.97438 * 7 5 4 9 9 C 1.76205 * 100.00100 * 179.97438 * 8 7 5 10 10 H 1.07993 * 119.99959 * 0.02562 * 9 8 7 11 11 C 1.38803 * 119.99790 * 179.97438 * 9 8 7 12 12 N 1.31623 * 120.00385 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99642 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46901 * 60.00475 * 13 11 9 15 15 H 1.48505 * 109.47203 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47530 * 300.00786 * 13 11 9 17 17 C 1.53006 * 109.46756 * 119.99649 * 2 1 3 18 18 C 1.53938 * 113.73586 * 282.05708 * 17 2 1 19 19 N 1.48181 * 86.10106 * 221.95847 * 18 17 2 20 20 C 1.46900 * 111.07093 * 137.52182 * 19 18 17 21 21 C 1.50705 * 109.47198 * 70.56440 * 20 19 18 22 22 C 1.39867 * 125.89530 * 94.71556 * 21 20 19 23 23 C 1.35320 * 107.91494 * 179.86272 * 22 21 20 24 24 N 1.34943 * 107.74786 * 0.39560 * 23 22 21 25 25 C 1.46499 * 126.03944 * 179.74940 * 24 23 22 26 26 N 1.30837 * 125.89701 * 275.02480 * 21 20 19 27 27 C 1.47960 * 90.80492 * 24.59840 * 19 18 17 28 28 H 1.09010 * 109.46848 * 55.99272 * 1 2 3 29 29 H 1.08998 * 109.47697 * 175.99223 * 1 2 3 30 30 H 1.08998 * 109.47507 * 295.99928 * 1 2 3 31 31 H 0.96996 * 120.00034 * 265.00371 * 4 2 1 32 32 H 1.09002 * 109.47269 * 299.99334 * 7 5 4 33 33 H 1.09004 * 109.47854 * 59.99431 * 7 5 4 34 34 H 0.96998 * 120.00224 * 180.02562 * 12 11 9 35 35 H 1.08998 * 112.93711 * 53.62286 * 17 2 1 36 36 H 1.09001 * 113.75794 * 336.23861 * 18 17 2 37 37 H 1.08995 * 113.75712 * 107.59947 * 18 17 2 38 38 H 1.09009 * 109.47091 * 190.56201 * 20 19 18 39 39 H 1.09000 * 109.47129 * 310.56405 * 20 19 18 40 40 H 1.07997 * 126.04458 * 359.97438 * 22 21 20 41 41 H 1.08000 * 126.12721 * 180.14079 * 23 22 21 42 42 H 1.09001 * 109.47120 * 269.97003 * 25 24 23 43 43 H 1.08997 * 109.46935 * 29.97311 * 25 24 23 44 44 H 1.09004 * 109.47403 * 149.97589 * 25 24 23 45 45 H 1.08995 * 113.76510 * 221.08527 * 27 19 18 46 46 H 1.08998 * 113.85583 * 89.72724 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1472 -0.0184 -2.3570 6 8 1.8584 1.1583 -2.4117 7 6 2.6491 -0.7290 -3.5875 8 16 2.7096 0.4338 -4.9732 9 6 3.3130 -0.6315 -6.2405 10 1 3.5223 -1.6679 -6.0204 11 6 3.5184 -0.1388 -7.5218 12 7 3.2628 1.1242 -7.7901 13 14 4.1588 -1.2680 -8.8650 14 1 3.2087 -2.3925 -9.0610 15 1 4.2911 -0.5047 -10.1320 16 1 5.4858 -1.8045 -8.4698 17 6 2.0398 -0.7212 1.2494 18 6 1.9688 0.1312 2.5292 19 7 3.3074 -0.4185 2.8484 20 6 4.1968 0.6272 3.3713 21 6 3.7438 1.0280 4.7517 22 6 4.2346 0.5153 5.9569 23 6 3.5780 1.1292 6.9684 24 7 2.6967 1.9930 6.4225 25 6 1.7744 2.8626 7.1568 26 7 2.8196 1.9114 5.0294 27 6 3.5695 -0.6691 1.4139 28 1 -0.3633 0.5748 -0.8520 29 1 -0.3634 -1.0251 -0.0718 30 1 -0.3634 0.4505 0.9236 31 1 2.2490 -1.6318 -1.1524 32 1 3.6482 -1.1215 -3.3983 33 1 1.9763 -1.5509 -3.8324 34 1 3.4060 1.4683 -8.6856 35 1 1.6201 -1.7206 1.3640 36 1 1.9683 1.2050 2.3422 37 1 1.1877 -0.1814 3.2222 38 1 5.2168 0.2457 3.4201 39 1 4.1645 1.4947 2.7122 40 1 5.0030 -0.2363 6.0617 41 1 3.7291 0.9556 8.0236 42 1 0.8324 2.3387 7.3189 43 1 2.2131 3.1276 8.1188 44 1 1.5914 3.7686 6.5790 45 1 4.0651 -1.6198 1.2175 46 1 4.0383 0.1692 0.8985 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734109464.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:15 Heat of formation + Delta-G solvation = 48.579803 kcal Electronic energy + Delta-G solvation = -25870.688084 eV Core-core repulsion = 22116.356410 eV Total energy + Delta-G solvation = -3754.331674 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.17676 -41.32728 -40.19040 -36.45440 -34.61455 -34.56653 -32.79843 -31.25053 -30.72115 -29.82184 -27.65524 -27.45783 -27.02804 -25.37489 -23.03599 -22.03686 -21.61821 -20.71298 -20.61368 -19.73886 -17.95074 -17.82024 -17.52424 -16.89339 -16.86599 -16.43005 -16.29883 -15.97580 -15.86523 -15.59526 -14.96928 -14.66562 -14.60656 -14.52037 -14.28456 -13.88719 -13.72157 -13.45475 -13.42061 -13.28934 -13.19655 -13.15126 -12.88912 -12.85063 -12.60422 -12.55793 -11.96514 -11.86440 -11.71023 -11.64871 -11.45764 -11.11687 -10.88499 -10.33317 -10.25755 -10.11646 -9.78796 -9.46401 -8.65150 -8.33204 -6.11251 0.95085 1.28275 1.44809 1.47959 1.57801 1.65747 1.68365 1.79126 2.25596 2.30497 2.98155 3.00791 3.31532 3.43864 3.55886 3.67194 3.83807 3.99026 4.14243 4.15849 4.23077 4.28198 4.33079 4.41526 4.42794 4.44026 4.47517 4.53873 4.55418 4.68946 4.73441 4.75633 4.81110 4.84311 4.93237 4.98651 5.07945 5.18491 5.29647 5.33665 5.42870 5.54697 5.67144 5.95253 6.19349 6.20904 6.57076 6.76973 7.07907 7.30470 8.75726 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.026573 B = 0.001776 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.448716 B =15762.198791 C =15985.690019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.155 3.845 3 H 0.059 0.941 4 N -0.705 5.705 5 C 0.536 3.464 6 O -0.567 6.567 7 C -0.129 4.129 8 S -0.154 6.154 9 C -0.547 4.547 10 H 0.083 0.917 11 C 0.013 3.987 12 N -0.912 5.912 13 Si 0.998 3.002 14 H -0.262 1.262 15 H -0.280 1.280 16 H -0.262 1.262 17 C -0.106 4.106 18 C 0.027 3.973 19 N -0.474 5.474 20 C 0.102 3.898 21 C 0.065 3.935 22 C -0.278 4.278 23 C 0.059 3.941 24 N -0.382 5.382 25 C 0.093 3.907 26 N -0.333 5.333 27 C 0.011 3.989 28 H 0.033 0.967 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.417 0.583 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.271 0.729 35 H 0.126 0.874 36 H 0.061 0.939 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.043 0.957 40 H 0.159 0.841 41 H 0.213 0.787 42 H 0.084 0.916 43 H 0.118 0.882 44 H 0.082 0.918 45 H 0.110 0.890 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.677 -6.068 33.934 34.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.050 3.950 3 H 0.077 0.923 4 N -0.358 5.358 5 C 0.321 3.679 6 O -0.446 6.446 7 C -0.280 4.280 8 S 0.073 5.927 9 C -0.695 4.695 10 H 0.102 0.898 11 C -0.192 4.192 12 N -0.548 5.548 13 Si 0.820 3.180 14 H -0.186 1.186 15 H -0.205 1.205 16 H -0.186 1.186 17 C -0.126 4.126 18 C -0.103 4.103 19 N -0.196 5.196 20 C -0.028 4.028 21 C -0.101 4.101 22 C -0.307 4.307 23 C -0.088 4.088 24 N -0.165 5.165 25 C -0.046 4.046 26 N -0.157 5.157 27 C -0.118 4.118 28 H 0.052 0.948 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.254 0.746 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.080 0.920 35 H 0.144 0.856 36 H 0.079 0.921 37 H 0.105 0.895 38 H 0.126 0.874 39 H 0.061 0.939 40 H 0.177 0.823 41 H 0.230 0.770 42 H 0.102 0.898 43 H 0.137 0.863 44 H 0.101 0.899 45 H 0.128 0.872 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.026 -3.565 33.867 34.115 hybrid contribution 1.212 -1.459 -1.132 2.210 sum -0.813 -5.024 32.735 33.128 Atomic orbital electron populations 1.22102 0.94607 1.02935 1.01938 1.20945 0.94613 0.96047 0.83400 0.92313 1.45757 1.67388 1.14593 1.08103 1.20051 0.76630 0.86539 0.84637 1.90691 1.50806 1.17903 1.85174 1.23374 1.05586 1.03113 0.95936 1.85594 1.86717 1.17450 1.02896 1.23184 1.50924 0.98511 0.96834 0.89843 1.26132 0.95087 0.97192 1.00761 1.70179 1.46855 1.15532 1.22258 0.85007 0.79103 0.77742 0.76162 1.18630 1.20466 1.18622 1.23228 0.96084 1.01182 0.92062 1.23785 0.93344 0.97620 0.95523 1.68646 1.02405 1.32556 1.16038 1.20980 0.98590 0.94007 0.89230 1.22231 0.95497 0.95444 0.96880 1.21662 1.09303 1.09125 0.90658 1.23163 0.91851 0.92316 1.01445 1.48852 1.30993 1.32903 1.03748 1.22161 0.92444 0.93506 0.96539 1.77255 1.22204 1.23486 0.92777 1.23985 0.96368 1.03210 0.88193 0.94801 0.90602 0.90341 0.74601 0.87118 0.87247 0.92038 0.85604 0.92114 0.89528 0.87354 0.93878 0.82302 0.77031 0.89781 0.86332 0.89917 0.87153 0.91916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.46 9.46 71.98 0.68 -2.78 16 2 C 0.16 3.54 2.29 44.99 0.10 3.64 16 3 H 0.06 1.72 7.49 -2.39 -0.02 1.70 16 4 N -0.70 -17.42 4.95 -442.54 -2.19 -19.61 16 5 C 0.54 19.71 7.81 87.66 0.68 20.39 16 6 O -0.57 -26.61 15.52 -3.03 -0.05 -26.66 16 7 C -0.13 -5.09 6.16 71.23 0.44 -4.65 16 8 S -0.15 -8.60 20.57 -56.49 -1.16 -9.76 16 9 C -0.55 -31.35 9.50 67.96 0.65 -30.71 16 10 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 11 C 0.01 0.74 5.49 84.86 0.47 1.21 16 12 N -0.91 -56.47 13.22 21.65 0.29 -56.18 16 13 Si 1.00 43.74 29.55 68.60 2.03 45.77 16 14 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 15 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 16 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 17 C -0.11 -1.77 3.35 -10.14 -0.03 -1.80 16 18 C 0.03 0.51 6.78 86.37 0.59 1.10 16 19 N -0.47 -8.89 6.25 -911.73 -5.70 -14.59 16 20 C 0.10 1.99 5.39 85.56 0.46 2.45 16 21 C 0.07 1.37 6.28 43.10 0.27 1.65 16 22 C -0.28 -4.62 10.74 21.99 0.24 -4.38 16 23 C 0.06 0.73 11.49 83.54 0.96 1.69 16 24 N -0.38 -6.11 4.01 -369.56 -1.48 -7.60 16 25 C 0.09 0.67 11.47 127.77 1.47 2.14 16 26 N -0.33 -7.68 12.46 -47.38 -0.59 -8.27 16 27 C 0.01 0.19 7.41 86.41 0.64 0.83 16 28 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 29 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.08 1.47 7.99 -2.39 -0.02 1.45 16 31 H 0.42 7.27 8.60 -92.71 -0.80 6.47 16 32 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 33 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 34 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 35 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.06 1.38 7.69 -2.39 -0.02 1.36 16 37 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 39 H 0.04 0.94 7.70 -2.39 -0.02 0.92 16 40 H 0.16 2.06 8.06 -2.91 -0.02 2.03 16 41 H 0.21 0.68 8.06 -2.91 -0.02 0.66 16 42 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.12 0.07 8.14 -2.39 -0.02 0.05 16 44 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 45 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.06 1.27 7.75 -2.39 -0.02 1.25 16 Total: -1.00 -83.83 400.49 -1.08 -84.90 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: 0.18 Total: 21.23 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: 7.60 Total: -9.23 kcal Atomic # 7 Polarization: -96.58 SS G_CDS: -9.68 Total: -106.25 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -0.05 Total: -26.66 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.76 kcal Total: -83.83 -1.08 -84.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734109464.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.483 kcal (2) G-P(sol) polarization free energy of solvation -83.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds