Wall clock time and date at job start Tue Mar 31 2020 21:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47036 * 2 1 4 4 N 1.46503 * 109.47054 * 240.00576 * 2 1 3 5 5 C 1.36938 * 120.00277 * 84.99794 * 4 2 1 6 6 H 1.07998 * 119.99649 * 359.97438 * 5 4 2 7 7 C 1.38809 * 120.00282 * 180.02562 * 5 4 2 8 8 N 1.31627 * 119.99832 * 359.97438 * 7 5 4 9 9 Si 1.86791 * 120.00321 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47239 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47391 * 119.99692 * 9 7 5 12 12 H 1.48504 * 109.47421 * 239.99566 * 9 7 5 13 13 C 1.52996 * 109.47640 * 120.00470 * 2 1 3 14 14 C 1.53042 * 109.46119 * 60.06470 * 13 2 1 15 15 C 1.53194 * 109.31266 * 178.61451 * 14 13 2 16 16 N 1.46934 * 108.77173 * 54.64123 * 15 14 13 17 17 C 1.34770 * 120.63139 * 126.37137 * 16 15 14 18 18 O 1.21569 * 119.99946 * 175.87124 * 17 16 15 19 19 C 1.47702 * 119.99953 * 355.86606 * 17 16 15 20 20 C 1.39674 * 120.15520 * 54.23204 * 19 17 16 21 21 C 1.37851 * 119.92542 * 179.72019 * 20 19 17 22 22 C 1.38453 * 120.23786 * 0.53620 * 21 20 19 23 23 C 1.38377 * 120.31454 * 359.76284 * 22 21 20 24 24 F 1.35102 * 119.96489 * 179.97438 * 23 22 21 25 25 C 1.38547 * 120.07298 * 359.95683 * 23 22 21 26 26 F 1.35094 * 120.12136 * 179.97438 * 25 23 22 27 27 C 1.46930 * 118.73779 * 306.38537 * 16 15 14 28 28 C 1.53044 * 109.45706 * 299.99836 * 13 2 1 29 29 H 1.08994 * 109.47462 * 60.00178 * 1 2 3 30 30 H 1.09008 * 109.46371 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47087 * 299.99083 * 1 2 3 32 32 H 0.97003 * 120.00026 * 264.99318 * 4 2 1 33 33 H 0.97000 * 120.00141 * 180.02562 * 8 7 5 34 34 H 1.08996 * 109.45271 * 180.02562 * 13 2 1 35 35 H 1.08998 * 109.49866 * 298.57405 * 14 13 2 36 36 H 1.08997 * 109.49249 * 58.67047 * 14 13 2 37 37 H 1.08998 * 109.58595 * 294.85415 * 15 14 13 38 38 H 1.08994 * 109.70256 * 174.49002 * 15 14 13 39 39 H 1.08008 * 120.04051 * 359.97438 * 20 19 17 40 40 H 1.08001 * 119.88190 * 180.25529 * 21 20 19 41 41 H 1.07998 * 119.84293 * 179.74346 * 22 21 20 42 42 H 1.09001 * 109.58833 * 293.82767 * 27 16 15 43 43 H 1.08993 * 109.70380 * 173.46913 * 27 16 15 44 44 H 1.08994 * 109.50233 * 301.34130 * 28 13 2 45 45 H 1.09003 * 109.49463 * 61.40558 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1491 -0.0073 -2.3758 6 1 1.8918 1.0404 -2.4243 7 6 2.6113 -0.6617 -3.5094 8 7 2.9243 -1.9388 -3.4504 9 14 2.7890 0.2700 -5.1186 10 1 2.3741 1.6822 -4.9213 11 1 4.2057 0.2272 -5.5616 12 1 1.9279 -0.3586 -6.1523 13 6 2.0401 -0.7213 1.2491 14 6 1.5313 -2.1647 1.2480 15 6 2.0723 -2.8936 2.4820 16 7 1.7088 -2.1266 3.6814 17 6 1.0555 -2.7165 4.7019 18 8 0.8267 -2.0917 5.7194 19 6 0.6175 -4.1222 4.5842 20 6 1.5386 -5.1188 4.2536 21 6 1.1257 -6.4300 4.1506 22 6 -0.2016 -6.7618 4.3629 23 6 -1.1237 -5.7815 4.6848 24 9 -2.4172 -6.1131 4.8900 25 6 -0.7218 -4.4604 4.7974 26 9 -1.6213 -3.5025 5.1111 27 6 2.0708 -0.7041 3.7469 28 6 1.5299 0.0003 2.4986 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3632 -1.0278 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 2.2491 -1.6317 -1.1528 33 1 3.2477 -2.3961 -4.2424 34 1 3.1301 -0.7207 1.2489 35 1 0.4416 -2.1663 1.2730 36 1 1.8757 -2.6710 0.3463 37 1 3.1572 -2.9723 2.4135 38 1 1.6364 -3.8909 2.5402 39 1 2.5739 -4.8630 4.0829 40 1 1.8394 -7.2006 3.8990 41 1 -0.5188 -7.7905 4.2765 42 1 3.1557 -0.6043 3.7815 43 1 1.6339 -0.2543 4.6384 44 1 1.8732 1.0347 2.4870 45 1 0.4402 -0.0213 2.5116 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753276928.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:24 Heat of formation + Delta-G solvation = -84.838274 kcal Electronic energy + Delta-G solvation = -29835.727150 eV Core-core repulsion = 25489.476896 eV Total energy + Delta-G solvation = -4346.250254 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.77310 -48.84226 -40.73496 -38.89618 -37.92681 -35.49203 -33.12097 -32.06300 -30.94781 -30.64591 -30.51602 -28.22945 -25.83665 -24.56726 -23.62227 -23.45794 -22.90466 -21.62325 -20.08874 -18.86655 -18.12729 -17.86816 -17.42769 -17.26291 -16.79751 -16.41242 -15.93107 -15.38442 -15.27064 -15.11674 -14.88441 -14.63944 -14.44553 -14.20192 -13.84646 -13.78354 -13.41844 -13.20999 -13.00551 -12.71349 -12.55021 -12.47447 -12.20455 -12.05272 -11.92176 -11.61046 -11.40876 -11.06813 -10.88413 -10.63076 -10.38219 -10.31145 -10.19516 -10.06770 -9.75826 -9.58026 -9.44758 -9.15076 -8.93683 -8.72602 -6.97408 -5.79637 -3.07184 0.26562 0.48386 2.29650 2.65450 3.00758 3.37510 3.41018 3.47454 3.48996 3.92394 3.99852 4.28151 4.31514 4.56389 4.59324 4.79840 4.94802 5.04302 5.08343 5.17306 5.26823 5.32768 5.41751 5.45824 5.49752 5.52633 5.59463 5.67016 5.74620 5.77623 5.92475 5.94288 6.08572 6.16232 6.19967 6.23916 6.28236 6.43531 6.50630 6.64153 6.73450 6.89874 7.13000 7.19053 7.69283 7.88436 8.40116 9.51356 10.09424 10.43957 11.43397 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015137 B = 0.002837 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.328737 B = 9867.553333 C =10584.347438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.178 3.822 3 H 0.046 0.954 4 N -0.725 5.725 5 C -0.235 4.235 6 H 0.070 0.930 7 C -0.015 4.015 8 N -0.934 5.934 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.090 4.090 14 C -0.129 4.129 15 C 0.096 3.904 16 N -0.595 5.595 17 C 0.561 3.439 18 O -0.528 6.528 19 C -0.131 4.131 20 C -0.072 4.072 21 C -0.102 4.102 22 C -0.108 4.108 23 C 0.064 3.936 24 F -0.125 7.125 25 C 0.113 3.887 26 F -0.114 7.114 27 C 0.113 3.887 28 C -0.129 4.129 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.037 0.963 32 H 0.383 0.617 33 H 0.254 0.746 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.148 0.852 40 H 0.149 0.851 41 H 0.151 0.849 42 H 0.071 0.929 43 H 0.090 0.910 44 H 0.076 0.924 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.476 -9.381 17.889 20.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.068 3.932 3 H 0.064 0.936 4 N -0.367 5.367 5 C -0.366 4.366 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.583 5.583 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C -0.109 4.109 14 C -0.167 4.167 15 C -0.026 4.026 16 N -0.327 5.327 17 C 0.348 3.652 18 O -0.405 6.405 19 C -0.135 4.135 20 C -0.090 4.090 21 C -0.121 4.121 22 C -0.126 4.126 23 C 0.044 3.956 24 F -0.103 7.103 25 C 0.092 3.908 26 F -0.092 7.092 27 C -0.009 4.009 28 C -0.168 4.168 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.218 0.782 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.105 0.895 39 H 0.166 0.834 40 H 0.167 0.833 41 H 0.169 0.831 42 H 0.089 0.911 43 H 0.109 0.891 44 H 0.095 0.905 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.661 -8.858 18.297 20.502 hybrid contribution -0.321 0.207 -1.042 1.110 sum -2.982 -8.652 17.255 19.531 Atomic orbital electron populations 1.22536 0.99575 1.00829 0.99792 1.20191 0.91740 0.95213 0.86050 0.93560 1.42493 1.78146 1.10702 1.05336 1.19296 1.36017 0.93888 0.87396 0.91240 1.24704 1.02357 0.95984 0.97982 1.69657 1.51305 1.08648 1.28736 0.86151 0.77272 0.78834 0.84155 1.20617 1.21930 1.21946 1.21398 1.00396 0.94448 0.94693 1.21990 1.01362 0.96372 0.96979 1.22162 1.00657 0.95480 0.84329 1.48059 1.56062 1.11367 1.17242 1.17907 0.78197 0.85488 0.83603 1.90818 1.56061 1.64623 1.29030 1.19892 0.92337 0.95857 1.05389 1.21334 0.99877 0.91797 0.96016 1.21068 0.95271 0.96487 0.99229 1.21282 0.92811 0.99571 0.98977 1.17536 0.80234 0.91659 1.06162 1.91559 1.33410 1.92746 1.92608 1.17570 0.86718 0.84766 1.01793 1.91591 1.65852 1.62051 1.89706 1.21707 1.00084 0.79238 0.99821 1.22034 1.01653 0.99442 0.93670 0.93122 0.93386 0.94385 0.78225 0.93643 0.90915 0.91337 0.89358 0.90584 0.89547 0.83404 0.83287 0.83112 0.91119 0.89143 0.90500 0.91125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.95 8.79 37.16 0.33 -2.62 16 2 C 0.18 3.31 2.72 -67.93 -0.18 3.12 16 3 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 4 N -0.72 -17.09 5.04 -53.42 -0.27 -17.36 16 5 C -0.23 -6.31 9.93 -15.06 -0.15 -6.46 16 6 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 7 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 8 N -0.93 -27.23 13.06 55.49 0.72 -26.51 16 9 Si 0.90 21.98 29.55 -169.99 -5.02 16.96 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 13 C -0.09 -1.32 2.14 -90.58 -0.19 -1.52 16 14 C -0.13 -1.78 4.81 -26.61 -0.13 -1.91 16 15 C 0.10 1.05 5.53 -3.71 -0.02 1.03 16 16 N -0.59 -7.24 2.97 -173.93 -0.52 -7.76 16 17 C 0.56 7.68 6.91 -12.40 -0.09 7.59 16 18 O -0.53 -8.98 16.31 5.30 0.09 -8.89 16 19 C -0.13 -1.49 4.89 -104.92 -0.51 -2.00 16 20 C -0.07 -0.56 7.42 -39.19 -0.29 -0.85 16 21 C -0.10 -0.61 10.03 -39.64 -0.40 -1.01 16 22 C -0.11 -0.75 10.01 -39.45 -0.40 -1.15 16 23 C 0.06 0.66 7.30 -39.42 -0.29 0.37 16 24 F -0.12 -1.41 17.18 2.25 0.04 -1.37 16 25 C 0.11 1.39 7.28 -38.89 -0.28 1.11 16 26 F -0.11 -1.68 16.58 2.25 0.04 -1.65 16 27 C 0.11 1.34 6.42 -3.71 -0.02 1.32 16 28 C -0.13 -1.62 4.97 -26.61 -0.13 -1.76 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.05 0.85 6.46 -51.92 -0.34 0.52 16 31 H 0.04 0.58 6.46 -51.93 -0.34 0.24 16 32 H 0.38 9.40 6.04 -40.82 -0.25 9.15 16 33 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.07 1.00 6.51 -51.93 -0.34 0.66 16 36 H 0.09 1.39 6.46 -51.93 -0.34 1.05 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 0.82 4.72 -51.93 -0.25 0.57 16 39 H 0.15 0.88 7.37 -52.48 -0.39 0.49 16 40 H 0.15 0.43 8.06 -52.49 -0.42 0.01 16 41 H 0.15 0.66 8.06 -52.49 -0.42 0.23 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.09 1.14 7.03 -51.93 -0.37 0.77 16 44 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.07 0.95 6.51 -51.93 -0.34 0.61 16 LS Contribution 365.28 15.07 5.50 5.50 Total: -1.00 -32.53 365.28 -8.12 -40.66 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -5.85 Total: 5.65 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -2.85 Total: -5.23 kcal Atomic # 7 Polarization: -51.57 SS G_CDS: -0.06 Total: -51.63 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.09 Total: -8.89 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.08 Total: -3.02 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.53 -8.12 -40.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753276928.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.182 kcal (2) G-P(sol) polarization free energy of solvation -32.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds