Wall clock time and date at job start Tue Mar 31 2020 21:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47036 * 2 1 4 4 N 1.46503 * 109.47054 * 240.00576 * 2 1 3 5 5 C 1.36938 * 120.00277 * 84.99794 * 4 2 1 6 6 H 1.07998 * 119.99649 * 359.97438 * 5 4 2 7 7 C 1.38809 * 120.00282 * 180.02562 * 5 4 2 8 8 N 1.31627 * 119.99832 * 359.97438 * 7 5 4 9 9 Si 1.86791 * 120.00321 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47239 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47391 * 119.99692 * 9 7 5 12 12 H 1.48504 * 109.47421 * 239.99566 * 9 7 5 13 13 C 1.52996 * 109.47640 * 120.00470 * 2 1 3 14 14 C 1.53042 * 109.46119 * 60.06470 * 13 2 1 15 15 C 1.53194 * 109.31266 * 178.61451 * 14 13 2 16 16 N 1.46934 * 108.77173 * 54.64123 * 15 14 13 17 17 C 1.34770 * 120.63139 * 126.37137 * 16 15 14 18 18 O 1.21569 * 119.99946 * 175.87124 * 17 16 15 19 19 C 1.47702 * 119.99953 * 355.86606 * 17 16 15 20 20 C 1.39674 * 120.15520 * 54.23204 * 19 17 16 21 21 C 1.37851 * 119.92542 * 179.72019 * 20 19 17 22 22 C 1.38453 * 120.23786 * 0.53620 * 21 20 19 23 23 C 1.38377 * 120.31454 * 359.76284 * 22 21 20 24 24 F 1.35102 * 119.96489 * 179.97438 * 23 22 21 25 25 C 1.38547 * 120.07298 * 359.95683 * 23 22 21 26 26 F 1.35094 * 120.12136 * 179.97438 * 25 23 22 27 27 C 1.46930 * 118.73779 * 306.38537 * 16 15 14 28 28 C 1.53044 * 109.45706 * 299.99836 * 13 2 1 29 29 H 1.08994 * 109.47462 * 60.00178 * 1 2 3 30 30 H 1.09008 * 109.46371 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47087 * 299.99083 * 1 2 3 32 32 H 0.97003 * 120.00026 * 264.99318 * 4 2 1 33 33 H 0.97000 * 120.00141 * 180.02562 * 8 7 5 34 34 H 1.08996 * 109.45271 * 180.02562 * 13 2 1 35 35 H 1.08998 * 109.49866 * 298.57405 * 14 13 2 36 36 H 1.08997 * 109.49249 * 58.67047 * 14 13 2 37 37 H 1.08998 * 109.58595 * 294.85415 * 15 14 13 38 38 H 1.08994 * 109.70256 * 174.49002 * 15 14 13 39 39 H 1.08008 * 120.04051 * 359.97438 * 20 19 17 40 40 H 1.08001 * 119.88190 * 180.25529 * 21 20 19 41 41 H 1.07998 * 119.84293 * 179.74346 * 22 21 20 42 42 H 1.09001 * 109.58833 * 293.82767 * 27 16 15 43 43 H 1.08993 * 109.70380 * 173.46913 * 27 16 15 44 44 H 1.08994 * 109.50233 * 301.34130 * 28 13 2 45 45 H 1.09003 * 109.49463 * 61.40558 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1491 -0.0073 -2.3758 6 1 1.8918 1.0404 -2.4243 7 6 2.6113 -0.6617 -3.5094 8 7 2.9243 -1.9388 -3.4504 9 14 2.7890 0.2700 -5.1186 10 1 2.3741 1.6822 -4.9213 11 1 4.2057 0.2272 -5.5616 12 1 1.9279 -0.3586 -6.1523 13 6 2.0401 -0.7213 1.2491 14 6 1.5313 -2.1647 1.2480 15 6 2.0723 -2.8936 2.4820 16 7 1.7088 -2.1266 3.6814 17 6 1.0555 -2.7165 4.7019 18 8 0.8267 -2.0917 5.7194 19 6 0.6175 -4.1222 4.5842 20 6 1.5386 -5.1188 4.2536 21 6 1.1257 -6.4300 4.1506 22 6 -0.2016 -6.7618 4.3629 23 6 -1.1237 -5.7815 4.6848 24 9 -2.4172 -6.1131 4.8900 25 6 -0.7218 -4.4604 4.7974 26 9 -1.6213 -3.5025 5.1111 27 6 2.0708 -0.7041 3.7469 28 6 1.5299 0.0003 2.4986 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3632 -1.0278 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 2.2491 -1.6317 -1.1528 33 1 3.2477 -2.3961 -4.2424 34 1 3.1301 -0.7207 1.2489 35 1 0.4416 -2.1663 1.2730 36 1 1.8757 -2.6710 0.3463 37 1 3.1572 -2.9723 2.4135 38 1 1.6364 -3.8909 2.5402 39 1 2.5739 -4.8630 4.0829 40 1 1.8394 -7.2006 3.8990 41 1 -0.5188 -7.7905 4.2765 42 1 3.1557 -0.6043 3.7815 43 1 1.6339 -0.2543 4.6384 44 1 1.8732 1.0347 2.4870 45 1 0.4402 -0.0213 2.5116 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753276928.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:23 Heat of formation + Delta-G solvation = -103.989177 kcal Electronic energy + Delta-G solvation = -29836.557596 eV Core-core repulsion = 25489.476896 eV Total energy + Delta-G solvation = -4347.080699 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.64144 -49.72268 -41.69697 -39.78999 -39.02681 -36.90835 -34.72685 -33.15023 -32.02991 -31.76251 -31.40067 -29.84949 -26.98065 -26.00757 -24.82973 -24.50531 -23.73996 -22.81604 -21.17313 -20.01863 -19.28076 -19.01546 -18.64082 -18.27441 -17.73223 -17.32307 -16.87583 -16.64491 -16.27192 -16.10075 -16.06530 -15.76432 -15.51321 -15.43844 -15.29721 -15.08743 -14.43352 -14.31131 -14.25446 -13.93868 -13.66272 -13.40659 -13.14269 -13.04209 -12.92653 -12.84218 -12.79586 -12.74595 -12.62718 -12.09788 -12.01156 -11.77807 -11.60874 -11.33324 -11.20025 -11.01334 -10.87314 -10.19521 -9.87189 -9.75545 -8.94646 -7.90752 -5.16667 -0.43141 -0.20207 1.33253 1.48364 1.49618 1.58323 1.79476 2.28939 2.58744 2.64727 3.08081 3.28076 3.42963 3.59420 3.72327 3.76291 3.80354 3.91829 4.04625 4.09490 4.24177 4.31789 4.36616 4.43260 4.52782 4.64768 4.68240 4.71515 4.77742 4.83159 4.85778 4.92634 4.97211 5.00048 5.06517 5.09645 5.12068 5.25976 5.32801 5.39747 5.51699 5.58280 5.59931 5.70131 6.19646 6.33452 6.88216 7.40182 8.17759 8.41838 9.32772 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015137 B = 0.002837 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.328737 B = 9867.553333 C =10584.347438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.172 3.828 3 H 0.040 0.960 4 N -0.733 5.733 5 C -0.235 4.235 6 H 0.069 0.931 7 C -0.072 4.072 8 N -0.966 5.966 9 Si 0.964 3.036 10 H -0.271 1.271 11 H -0.293 1.293 12 H -0.296 1.296 13 C -0.080 4.080 14 C -0.124 4.124 15 C 0.102 3.898 16 N -0.592 5.592 17 C 0.559 3.441 18 O -0.572 6.572 19 C -0.149 4.149 20 C -0.066 4.066 21 C -0.081 4.081 22 C -0.092 4.092 23 C 0.048 3.952 24 F -0.137 7.137 25 C 0.076 3.924 26 F -0.141 7.141 27 C 0.114 3.886 28 C -0.120 4.120 29 H 0.028 0.972 30 H 0.043 0.957 31 H 0.063 0.937 32 H 0.377 0.623 33 H 0.250 0.750 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.173 0.827 40 H 0.195 0.805 41 H 0.184 0.816 42 H 0.091 0.909 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.087 -10.838 18.160 21.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.064 3.936 3 H 0.058 0.942 4 N -0.375 5.375 5 C -0.367 4.367 6 H 0.087 0.913 7 C -0.265 4.265 8 N -0.617 5.617 9 Si 0.794 3.206 10 H -0.196 1.196 11 H -0.221 1.221 12 H -0.224 1.224 13 C -0.099 4.099 14 C -0.162 4.162 15 C -0.019 4.019 16 N -0.323 5.323 17 C 0.347 3.653 18 O -0.452 6.452 19 C -0.153 4.153 20 C -0.084 4.084 21 C -0.099 4.099 22 C -0.111 4.111 23 C 0.028 3.972 24 F -0.116 7.116 25 C 0.055 3.945 26 F -0.120 7.120 27 C -0.008 4.008 28 C -0.159 4.159 29 H 0.048 0.952 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.211 0.789 33 H 0.059 0.941 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.116 0.884 38 H 0.123 0.877 39 H 0.190 0.810 40 H 0.212 0.788 41 H 0.201 0.799 42 H 0.109 0.891 43 H 0.100 0.900 44 H 0.108 0.892 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.281 -10.289 18.578 21.275 hybrid contribution -0.759 0.642 -1.099 1.482 sum -2.040 -9.647 17.479 20.068 Atomic orbital electron populations 1.22397 0.98736 1.00608 0.99983 1.20403 0.92145 0.94959 0.86093 0.94193 1.42657 1.78273 1.10559 1.06005 1.19611 1.34429 0.94014 0.88618 0.91290 1.25396 1.03304 0.96867 1.00910 1.69783 1.52858 1.09880 1.29159 0.85211 0.76763 0.78141 0.80496 1.19559 1.22068 1.22393 1.21252 1.00228 0.94835 0.93574 1.21883 1.00634 0.95971 0.97757 1.22217 1.01903 0.95621 0.82176 1.48124 1.55448 1.11531 1.17157 1.18299 0.77481 0.86397 0.83139 1.90784 1.57700 1.65967 1.30761 1.19855 0.92620 0.95369 1.07504 1.21713 1.00238 0.91835 0.94613 1.21601 0.95389 0.96513 0.96394 1.21753 0.92578 1.00201 0.96541 1.17856 0.80444 0.91644 1.07291 1.91522 1.34443 1.92721 1.92885 1.18004 0.87069 0.85285 1.04177 1.91505 1.66853 1.63263 1.90385 1.21722 1.01156 0.79106 0.98807 1.21942 1.00973 1.00083 0.92862 0.95236 0.93819 0.91810 0.78949 0.94136 0.90927 0.92503 0.91189 0.88372 0.87718 0.80999 0.78819 0.79872 0.89125 0.89962 0.89166 0.92083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.53 8.79 71.98 0.63 -4.89 16 2 C 0.17 6.34 2.72 44.99 0.12 6.46 16 3 H 0.04 1.53 8.08 -2.38 -0.02 1.51 16 4 N -0.73 -34.71 5.04 -322.94 -1.63 -36.34 16 5 C -0.23 -12.62 9.93 84.03 0.83 -11.78 16 6 H 0.07 3.64 7.83 -2.91 -0.02 3.62 16 7 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 8 N -0.97 -56.66 13.06 21.65 0.28 -56.38 16 9 Si 0.96 45.28 29.55 68.60 2.03 47.31 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 12 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 13 C -0.08 -2.26 2.14 -10.77 -0.02 -2.28 16 14 C -0.12 -3.32 4.81 30.67 0.15 -3.17 16 15 C 0.10 2.01 5.53 86.36 0.48 2.48 16 16 N -0.59 -13.60 2.97 -822.46 -2.44 -16.04 16 17 C 0.56 15.10 6.91 86.75 0.60 15.70 16 18 O -0.57 -19.93 16.31 -3.93 -0.06 -20.00 16 19 C -0.15 -3.26 4.89 -20.06 -0.10 -3.36 16 20 C -0.07 -0.80 7.42 22.52 0.17 -0.64 16 21 C -0.08 -0.58 10.03 22.23 0.22 -0.36 16 22 C -0.09 -0.97 10.01 22.35 0.22 -0.75 16 23 C 0.05 0.94 7.30 22.38 0.16 1.11 16 24 F -0.14 -3.11 17.18 44.97 0.77 -2.33 16 25 C 0.08 1.90 7.28 22.71 0.17 2.06 16 26 F -0.14 -4.50 16.58 44.97 0.75 -3.75 16 27 C 0.11 2.54 6.42 86.36 0.55 3.09 16 28 C -0.12 -2.86 4.97 30.67 0.15 -2.71 16 29 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.04 1.55 6.46 -2.38 -0.02 1.54 16 31 H 0.06 1.89 6.46 -2.39 -0.02 1.87 16 32 H 0.38 18.65 6.04 -92.71 -0.56 18.09 16 33 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 34 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.06 1.65 6.51 -2.39 -0.02 1.63 16 36 H 0.07 2.17 6.46 -2.39 -0.02 2.15 16 37 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.10 1.69 4.72 -2.39 -0.01 1.68 16 39 H 0.17 1.26 7.37 -2.91 -0.02 1.24 16 40 H 0.19 -0.22 8.06 -2.91 -0.02 -0.25 16 41 H 0.18 0.73 8.06 -2.91 -0.02 0.71 16 42 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.08 2.03 7.03 -2.39 -0.02 2.01 16 44 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.06 1.58 6.51 -2.39 -0.02 1.57 16 Total: -1.00 -73.72 365.28 4.98 -68.74 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: 0.48 Total: 21.39 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: 4.81 Total: -2.60 kcal Atomic # 7 Polarization: -104.97 SS G_CDS: -3.79 Total: -108.76 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -0.06 Total: -20.00 kcal Atomic # 9 Polarization: -7.60 SS G_CDS: 1.52 Total: -6.08 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -73.72 4.98 -68.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753276928.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.248 kcal (2) G-P(sol) polarization free energy of solvation -73.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds