Wall clock time and date at job start Tue Mar 31 2020 20:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 110.65730 * 2 1 4 4 C 1.54604 * 110.57122 * 123.39226 * 2 1 3 5 5 N 1.48120 * 103.42044 * 81.16783 * 4 2 1 6 6 C 1.34778 * 127.03131 * 219.27910 * 5 4 2 7 7 O 1.21551 * 119.99758 * 183.40656 * 6 5 4 8 8 C 1.47843 * 120.00100 * 3.41348 * 6 5 4 9 9 C 1.39600 * 120.14194 * 325.56027 * 8 6 5 10 10 C 1.37937 * 119.85447 * 180.02562 * 9 8 6 11 11 C 1.38387 * 120.14004 * 359.97438 * 10 9 8 12 12 C 1.38333 * 120.29639 * 0.04306 * 11 10 9 13 13 C 1.50700 * 119.92733 * 179.97438 * 12 11 10 14 14 F 1.39901 * 109.46978 * 240.00016 * 13 12 11 15 15 F 1.39901 * 109.47035 * 119.99868 * 13 12 11 16 16 C 1.37977 * 120.14190 * 0.25292 * 12 11 10 17 17 C 1.47483 * 105.93253 * 39.02790 * 5 4 2 18 18 C 1.54005 * 107.08294 * 334.77264 * 17 5 4 19 19 H 1.09001 * 110.32547 * 120.20138 * 18 17 5 20 20 C 1.52999 * 110.32715 * 242.31613 * 18 17 5 21 21 N 1.46501 * 109.47179 * 293.54803 * 20 18 17 22 22 C 1.36936 * 120.00107 * 180.02562 * 21 20 18 23 23 H 1.07997 * 120.00366 * 359.97438 * 22 21 20 24 24 C 1.38821 * 119.99938 * 179.97438 * 22 21 20 25 25 N 1.31620 * 119.99947 * 179.97438 * 24 22 21 26 26 Si 1.86790 * 119.99890 * 0.02562 * 24 22 21 27 27 H 1.48504 * 109.47103 * 89.99953 * 26 24 22 28 28 H 1.48507 * 109.47076 * 209.99780 * 26 24 22 29 29 H 1.48502 * 109.47608 * 329.99866 * 26 24 22 30 30 H 1.08993 * 109.47095 * 183.19033 * 1 2 3 31 31 H 1.08994 * 109.46995 * 303.19986 * 1 2 3 32 32 H 1.09003 * 109.46550 * 63.19405 * 1 2 3 33 33 H 1.08993 * 110.61567 * 322.65435 * 4 2 1 34 34 H 1.09000 * 110.54408 * 199.65082 * 4 2 1 35 35 H 1.08003 * 120.07681 * 359.97438 * 9 8 6 36 36 H 1.07990 * 119.93094 * 179.97438 * 10 9 8 37 37 H 1.07999 * 119.85104 * 180.02562 * 11 10 9 38 38 H 1.09001 * 109.47154 * 359.97438 * 13 12 11 39 39 H 1.08003 * 120.07166 * 179.72517 * 16 12 11 40 40 H 1.08995 * 109.91892 * 94.13403 * 17 5 4 41 41 H 1.09003 * 109.91225 * 215.22657 * 17 5 4 42 42 H 1.08996 * 109.47428 * 53.54452 * 20 18 17 43 43 H 1.08999 * 109.47279 * 173.54957 * 20 18 17 44 44 H 0.97006 * 119.99997 * 359.97438 * 21 20 18 45 45 H 0.96993 * 120.00185 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9146 1.0199 0.0000 4 6 2.0733 -0.7966 1.2085 5 7 1.9870 -2.2052 0.7586 6 6 1.6219 -3.2722 1.4967 7 8 1.6550 -4.3864 1.0121 8 6 1.1812 -3.0873 2.8958 9 6 1.7568 -2.0909 3.6862 10 6 1.3414 -1.9240 4.9909 11 6 0.3560 -2.7413 5.5164 12 6 -0.2182 -3.7307 4.7386 13 6 -1.2902 -4.6163 5.3195 14 9 -0.8688 -5.9496 5.2741 15 9 -2.4667 -4.4735 4.5760 16 6 0.1925 -3.9121 3.4340 17 6 2.3763 -2.2004 -0.6639 18 6 2.0776 -0.7917 -1.2099 19 1 2.9911 -0.3288 -1.5833 20 6 1.0272 -0.8637 -2.3201 21 7 1.5844 -1.5732 -3.4744 22 6 0.8220 -1.7604 -4.5963 23 1 -0.1902 -1.3854 -4.6302 24 6 1.3502 -2.4323 -5.6903 25 7 0.6173 -2.6127 -6.7685 26 14 3.1007 -3.0815 -5.6315 27 1 3.0972 -4.4668 -5.0964 28 1 3.6750 -3.0813 -7.0010 29 1 3.9217 -2.2127 -4.7503 30 1 -0.3633 -1.0260 0.0572 31 1 -0.3633 0.5627 0.8599 32 1 -0.3632 0.4635 -0.9173 33 1 1.4489 -0.6345 2.0870 34 1 3.1076 -0.5213 1.4144 35 1 2.5262 -1.4527 3.2774 36 1 1.7861 -1.1539 5.6036 37 1 0.0340 -2.6062 6.5384 38 1 -1.4770 -4.3297 6.3545 39 1 -0.2534 -4.6879 2.8291 40 1 3.4402 -2.4173 -0.7585 41 1 1.7960 -2.9441 -1.2101 42 1 0.1491 -1.3965 -1.9555 43 1 0.7425 0.1457 -2.6169 44 1 2.4937 -1.9097 -3.4441 45 1 0.9862 -3.0824 -7.5327 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754825701.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:37 Heat of formation + Delta-G solvation = -85.822404 kcal Electronic energy + Delta-G solvation = -29334.098277 eV Core-core repulsion = 24987.805348 eV Total energy + Delta-G solvation = -4346.292929 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.31927 -47.30577 -40.79580 -39.28464 -37.87700 -34.91399 -33.19651 -32.37221 -31.63634 -31.36256 -29.43008 -27.12961 -26.66941 -25.60592 -24.21913 -22.76325 -22.29797 -21.52328 -20.02310 -19.30560 -18.08219 -17.72554 -17.53589 -17.35239 -16.94638 -16.41071 -16.38751 -15.60248 -15.24717 -14.78616 -14.37393 -14.29309 -14.19708 -14.07579 -13.76519 -13.67072 -13.36589 -13.33418 -13.14689 -13.00848 -12.73090 -12.63269 -12.31872 -12.02056 -11.99102 -11.91713 -11.75268 -11.35784 -11.29066 -10.92285 -10.64563 -10.56670 -10.34146 -10.05694 -10.01895 -9.57764 -9.56528 -9.45650 -8.88845 -8.72320 -7.22402 -5.75150 -3.11015 0.39407 0.71230 2.50883 2.76002 3.27185 3.29576 3.38729 3.42897 3.47792 3.72692 4.02514 4.19721 4.36634 4.46542 4.51171 4.57771 4.61351 4.64946 4.76928 4.78562 4.95585 5.11263 5.15851 5.23964 5.30005 5.40171 5.45005 5.55238 5.63452 5.66730 5.71210 5.76904 5.79071 5.81061 5.89124 6.03509 6.06333 6.19689 6.20698 6.29712 6.35664 6.60697 6.74774 7.42023 8.00116 8.03196 8.43588 9.22235 9.94615 10.13585 11.43321 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015342 B = 0.002738 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.611578 B =10225.658287 C =10853.828266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 H 0.091 0.909 4 C 0.091 3.909 5 N -0.609 5.609 6 C 0.572 3.428 7 O -0.527 6.527 8 C -0.120 4.120 9 C -0.074 4.074 10 C -0.128 4.128 11 C -0.067 4.067 12 C -0.178 4.178 13 C 0.315 3.685 14 F -0.198 7.198 15 F -0.197 7.197 16 C -0.025 4.025 17 C 0.109 3.891 18 C -0.108 4.108 19 H 0.086 0.914 20 C 0.166 3.834 21 N -0.757 5.757 22 C -0.244 4.244 23 H 0.090 0.910 24 C 0.005 3.995 25 N -0.934 5.934 26 Si 0.883 3.117 27 H -0.283 1.283 28 H -0.291 1.291 29 H -0.277 1.277 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.140 0.860 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.120 0.880 39 H 0.139 0.861 40 H 0.065 0.935 41 H 0.092 0.908 42 H 0.033 0.967 43 H 0.031 0.969 44 H 0.360 0.640 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.467 5.765 31.447 32.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 H 0.109 0.891 4 C -0.031 4.031 5 N -0.342 5.342 6 C 0.360 3.640 7 O -0.404 6.404 8 C -0.123 4.123 9 C -0.092 4.092 10 C -0.146 4.146 11 C -0.085 4.085 12 C -0.179 4.179 13 C 0.261 3.739 14 F -0.179 7.179 15 F -0.178 7.178 16 C -0.044 4.044 17 C -0.013 4.013 18 C -0.128 4.128 19 H 0.104 0.896 20 C 0.039 3.961 21 N -0.403 5.403 22 C -0.374 4.374 23 H 0.108 0.892 24 C -0.191 4.191 25 N -0.582 5.582 26 Si 0.714 3.286 27 H -0.209 1.209 28 H -0.217 1.217 29 H -0.204 1.204 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.157 0.843 36 H 0.155 0.845 37 H 0.152 0.848 38 H 0.137 0.863 39 H 0.157 0.843 40 H 0.083 0.917 41 H 0.110 0.890 42 H 0.051 0.949 43 H 0.049 0.951 44 H 0.193 0.807 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.242 5.036 31.034 31.465 hybrid contribution 1.274 -0.557 -0.246 1.412 sum 2.516 4.480 30.788 31.214 Atomic orbital electron populations 1.21839 0.94008 1.02339 1.02098 1.22198 0.96963 0.98928 0.93576 0.89121 1.22918 1.01029 0.80804 0.98375 1.48650 1.66290 1.07106 1.12195 1.17804 0.77597 0.83570 0.84988 1.90849 1.53774 1.23382 1.72401 1.19890 0.99660 0.98285 0.94458 1.21750 0.98297 0.95233 0.93953 1.21100 0.97884 1.00248 0.95329 1.21112 0.94809 0.93118 0.99448 1.20313 1.01211 1.00400 0.95939 1.20370 0.79648 0.78022 0.95835 1.93042 1.90290 1.36988 1.97549 1.93045 1.49327 1.95543 1.79911 1.21042 0.93345 0.96240 0.93769 1.22233 1.00340 0.98899 0.79841 1.22409 1.00620 0.94048 0.95713 0.89551 1.20777 0.93730 0.95828 0.85764 1.42755 1.14269 1.68894 1.14351 1.19032 0.97266 1.30545 0.90564 0.89240 1.24671 0.97692 1.00624 0.96090 1.69698 1.36274 1.47142 1.05081 0.86565 0.86009 0.79284 0.76787 1.20925 1.21719 1.20365 0.92347 0.93029 0.91177 0.89480 0.90558 0.84265 0.84498 0.84760 0.86258 0.84307 0.91679 0.89010 0.94921 0.95119 0.80745 0.93048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 7.97 37.16 0.30 -1.33 16 2 C -0.10 -1.00 3.60 -88.92 -0.32 -1.32 16 3 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 4 C 0.09 0.83 4.72 -2.31 -0.01 0.82 16 5 N -0.61 -8.06 3.19 -171.09 -0.55 -8.60 16 6 C 0.57 8.58 7.59 -12.33 -0.09 8.48 16 7 O -0.53 -10.26 17.17 5.32 0.09 -10.17 16 8 C -0.12 -1.38 5.60 -104.97 -0.59 -1.97 16 9 C -0.07 -0.58 7.77 -39.18 -0.30 -0.89 16 10 C -0.13 -0.74 10.03 -39.64 -0.40 -1.14 16 11 C -0.07 -0.39 9.66 -39.49 -0.38 -0.77 16 12 C -0.18 -1.52 5.37 -104.68 -0.56 -2.08 16 13 C 0.31 2.43 5.45 36.01 0.20 2.63 16 14 F -0.20 -2.02 17.25 2.25 0.04 -1.98 16 15 F -0.20 -2.00 17.26 2.25 0.04 -1.97 16 16 C -0.03 -0.29 9.15 -39.19 -0.36 -0.65 16 17 C 0.11 1.67 6.30 -2.98 -0.02 1.65 16 18 C -0.11 -1.52 2.99 -89.25 -0.27 -1.79 16 19 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 20 C 0.17 3.09 4.18 -4.04 -0.02 3.07 16 21 N -0.76 -17.92 5.14 -59.91 -0.31 -18.23 16 22 C -0.24 -7.00 10.47 -15.06 -0.16 -7.15 16 23 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 24 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 25 N -0.93 -29.83 13.97 55.49 0.78 -29.05 16 26 Si 0.88 22.52 27.74 -169.99 -4.71 17.80 16 27 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 28 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 29 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 30 H 0.06 0.77 7.61 -51.93 -0.40 0.38 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.84 6.68 -51.93 -0.35 0.50 16 33 H 0.09 0.65 5.50 -51.93 -0.29 0.36 16 34 H 0.08 0.54 8.05 -51.93 -0.42 0.12 16 35 H 0.14 0.86 5.72 -52.48 -0.30 0.56 16 36 H 0.14 0.39 8.06 -52.49 -0.42 -0.03 16 37 H 0.13 0.33 7.94 -52.49 -0.42 -0.08 16 38 H 0.12 0.40 7.87 -51.93 -0.41 -0.01 16 39 H 0.14 1.80 7.99 -52.48 -0.42 1.38 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.09 1.74 7.52 -51.93 -0.39 1.35 16 42 H 0.03 0.65 6.86 -51.93 -0.36 0.29 16 43 H 0.03 0.57 7.56 -51.93 -0.39 0.18 16 44 H 0.36 8.32 5.37 -40.82 -0.22 8.10 16 45 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 LS Contribution 370.45 15.07 5.58 5.58 Total: -1.00 -36.33 370.45 -8.18 -44.51 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -6.05 Total: 4.48 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -3.08 Total: -2.39 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: -0.08 Total: -55.88 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.09 Total: -10.17 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.08 Total: -3.94 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.71 Total: 17.80 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.33 -8.18 -44.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754825701.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.314 kcal (2) G-P(sol) polarization free energy of solvation -36.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds