Wall clock time and date at job start Tue Mar 31 2020 20:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 110.65730 * 2 1 4 4 C 1.54604 * 110.57122 * 123.39226 * 2 1 3 5 5 N 1.48120 * 103.42044 * 81.16783 * 4 2 1 6 6 C 1.34778 * 127.03131 * 219.27910 * 5 4 2 7 7 O 1.21551 * 119.99758 * 183.40656 * 6 5 4 8 8 C 1.47843 * 120.00100 * 3.41348 * 6 5 4 9 9 C 1.39600 * 120.14194 * 325.56027 * 8 6 5 10 10 C 1.37937 * 119.85447 * 180.02562 * 9 8 6 11 11 C 1.38387 * 120.14004 * 359.97438 * 10 9 8 12 12 C 1.38333 * 120.29639 * 0.04306 * 11 10 9 13 13 C 1.50700 * 119.92733 * 179.97438 * 12 11 10 14 14 F 1.39901 * 109.46978 * 240.00016 * 13 12 11 15 15 F 1.39901 * 109.47035 * 119.99868 * 13 12 11 16 16 C 1.37977 * 120.14190 * 0.25292 * 12 11 10 17 17 C 1.47483 * 105.93253 * 39.02790 * 5 4 2 18 18 C 1.54005 * 107.08294 * 334.77264 * 17 5 4 19 19 H 1.09001 * 110.32547 * 120.20138 * 18 17 5 20 20 C 1.52999 * 110.32715 * 242.31613 * 18 17 5 21 21 N 1.46501 * 109.47179 * 293.54803 * 20 18 17 22 22 C 1.36936 * 120.00107 * 180.02562 * 21 20 18 23 23 H 1.07997 * 120.00366 * 359.97438 * 22 21 20 24 24 C 1.38821 * 119.99938 * 179.97438 * 22 21 20 25 25 N 1.31620 * 119.99947 * 179.97438 * 24 22 21 26 26 Si 1.86790 * 119.99890 * 0.02562 * 24 22 21 27 27 H 1.48504 * 109.47103 * 89.99953 * 26 24 22 28 28 H 1.48507 * 109.47076 * 209.99780 * 26 24 22 29 29 H 1.48502 * 109.47608 * 329.99866 * 26 24 22 30 30 H 1.08993 * 109.47095 * 183.19033 * 1 2 3 31 31 H 1.08994 * 109.46995 * 303.19986 * 1 2 3 32 32 H 1.09003 * 109.46550 * 63.19405 * 1 2 3 33 33 H 1.08993 * 110.61567 * 322.65435 * 4 2 1 34 34 H 1.09000 * 110.54408 * 199.65082 * 4 2 1 35 35 H 1.08003 * 120.07681 * 359.97438 * 9 8 6 36 36 H 1.07990 * 119.93094 * 179.97438 * 10 9 8 37 37 H 1.07999 * 119.85104 * 180.02562 * 11 10 9 38 38 H 1.09001 * 109.47154 * 359.97438 * 13 12 11 39 39 H 1.08003 * 120.07166 * 179.72517 * 16 12 11 40 40 H 1.08995 * 109.91892 * 94.13403 * 17 5 4 41 41 H 1.09003 * 109.91225 * 215.22657 * 17 5 4 42 42 H 1.08996 * 109.47428 * 53.54452 * 20 18 17 43 43 H 1.08999 * 109.47279 * 173.54957 * 20 18 17 44 44 H 0.97006 * 119.99997 * 359.97438 * 21 20 18 45 45 H 0.96993 * 120.00185 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9146 1.0199 0.0000 4 6 2.0733 -0.7966 1.2085 5 7 1.9870 -2.2052 0.7586 6 6 1.6219 -3.2722 1.4967 7 8 1.6550 -4.3864 1.0121 8 6 1.1812 -3.0873 2.8958 9 6 1.7568 -2.0909 3.6862 10 6 1.3414 -1.9240 4.9909 11 6 0.3560 -2.7413 5.5164 12 6 -0.2182 -3.7307 4.7386 13 6 -1.2902 -4.6163 5.3195 14 9 -0.8688 -5.9496 5.2741 15 9 -2.4667 -4.4735 4.5760 16 6 0.1925 -3.9121 3.4340 17 6 2.3763 -2.2004 -0.6639 18 6 2.0776 -0.7917 -1.2099 19 1 2.9911 -0.3288 -1.5833 20 6 1.0272 -0.8637 -2.3201 21 7 1.5844 -1.5732 -3.4744 22 6 0.8220 -1.7604 -4.5963 23 1 -0.1902 -1.3854 -4.6302 24 6 1.3502 -2.4323 -5.6903 25 7 0.6173 -2.6127 -6.7685 26 14 3.1007 -3.0815 -5.6315 27 1 3.0972 -4.4668 -5.0964 28 1 3.6750 -3.0813 -7.0010 29 1 3.9217 -2.2127 -4.7503 30 1 -0.3633 -1.0260 0.0572 31 1 -0.3633 0.5627 0.8599 32 1 -0.3632 0.4635 -0.9173 33 1 1.4489 -0.6345 2.0870 34 1 3.1076 -0.5213 1.4144 35 1 2.5262 -1.4527 3.2774 36 1 1.7861 -1.1539 5.6036 37 1 0.0340 -2.6062 6.5384 38 1 -1.4770 -4.3297 6.3545 39 1 -0.2534 -4.6879 2.8291 40 1 3.4402 -2.4173 -0.7585 41 1 1.7960 -2.9441 -1.2101 42 1 0.1491 -1.3965 -1.9555 43 1 0.7425 0.1457 -2.6169 44 1 2.4937 -1.9097 -3.4441 45 1 0.9862 -3.0824 -7.5327 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754825701.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:36 Heat of formation + Delta-G solvation = -110.677877 kcal Electronic energy + Delta-G solvation = -29335.176091 eV Core-core repulsion = 24987.805348 eV Total energy + Delta-G solvation = -4347.370743 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.99701 -48.01409 -41.74954 -40.09403 -38.99052 -36.65825 -34.47814 -33.33582 -33.04457 -32.28063 -30.79981 -28.20786 -27.46270 -26.73986 -25.39858 -24.11187 -23.18867 -22.64687 -20.94496 -20.62314 -19.54801 -18.71041 -18.32760 -18.22246 -17.70662 -17.48529 -17.16293 -16.70482 -16.51071 -16.09129 -15.87074 -15.22841 -15.05122 -14.95748 -14.93029 -14.71172 -14.39961 -14.36751 -14.31606 -14.07836 -13.87147 -13.75941 -13.33460 -13.31861 -13.05019 -12.89257 -12.84975 -12.72717 -12.61682 -12.18646 -11.94631 -11.87984 -11.70453 -11.61062 -11.40671 -11.14320 -11.00802 -10.17649 -10.14764 -9.77773 -9.33762 -8.07576 -5.40935 -0.24148 0.07295 1.31596 1.37891 1.43407 1.54186 1.81452 2.43892 2.56863 2.73866 3.22272 3.24005 3.25054 3.41417 3.55845 3.63873 3.71225 3.84111 3.96693 4.03185 4.05870 4.15388 4.22539 4.26338 4.39654 4.49974 4.53038 4.59948 4.63094 4.71710 4.77834 4.82431 4.89014 4.94101 5.01070 5.13026 5.15178 5.21960 5.22353 5.24355 5.31731 5.50589 5.70965 5.73956 6.16586 6.39680 6.93846 7.03487 7.79501 7.97949 9.14257 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015342 B = 0.002738 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.611578 B =10225.658287 C =10853.828266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.087 4.087 3 H 0.131 0.869 4 C 0.091 3.909 5 N -0.607 5.607 6 C 0.562 3.438 7 O -0.595 6.595 8 C -0.144 4.144 9 C -0.069 4.069 10 C -0.113 4.113 11 C -0.049 4.049 12 C -0.186 4.186 13 C 0.305 3.695 14 F -0.218 7.218 15 F -0.217 7.217 16 C -0.058 4.058 17 C 0.107 3.893 18 C -0.099 4.099 19 H 0.107 0.893 20 C 0.165 3.835 21 N -0.759 5.759 22 C -0.235 4.235 23 H 0.054 0.946 24 C -0.065 4.065 25 N -0.984 5.984 26 Si 0.953 3.047 27 H -0.288 1.288 28 H -0.291 1.291 29 H -0.243 1.243 30 H 0.024 0.976 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.111 0.889 34 H 0.115 0.885 35 H 0.163 0.837 36 H 0.184 0.816 37 H 0.183 0.817 38 H 0.177 0.823 39 H 0.098 0.902 40 H 0.075 0.925 41 H 0.040 0.960 42 H 0.011 0.989 43 H 0.037 0.963 44 H 0.365 0.635 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.045 9.271 36.432 37.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.107 4.107 3 H 0.149 0.851 4 C -0.029 4.029 5 N -0.338 5.338 6 C 0.353 3.647 7 O -0.477 6.477 8 C -0.147 4.147 9 C -0.087 4.087 10 C -0.130 4.130 11 C -0.067 4.067 12 C -0.187 4.187 13 C 0.252 3.748 14 F -0.199 7.199 15 F -0.199 7.199 16 C -0.078 4.078 17 C -0.016 4.016 18 C -0.118 4.118 19 H 0.125 0.875 20 C 0.039 3.961 21 N -0.405 5.405 22 C -0.366 4.366 23 H 0.072 0.928 24 C -0.256 4.256 25 N -0.635 5.635 26 Si 0.780 3.220 27 H -0.214 1.214 28 H -0.217 1.217 29 H -0.167 1.167 30 H 0.043 0.957 31 H 0.101 0.899 32 H 0.073 0.927 33 H 0.129 0.871 34 H 0.133 0.867 35 H 0.180 0.820 36 H 0.201 0.799 37 H 0.200 0.800 38 H 0.194 0.806 39 H 0.116 0.884 40 H 0.093 0.907 41 H 0.059 0.941 42 H 0.029 0.971 43 H 0.055 0.945 44 H 0.198 0.802 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.827 8.619 36.079 37.291 hybrid contribution 0.317 -1.605 -1.721 2.374 sum 4.144 7.014 34.358 35.311 Atomic orbital electron populations 1.21828 0.95136 1.00554 1.02763 1.22283 0.95949 1.00541 0.91887 0.85082 1.23304 1.03781 0.77419 0.98410 1.48734 1.65157 1.08777 1.11158 1.18561 0.76620 0.82974 0.86568 1.90792 1.56676 1.26085 1.74175 1.19673 1.01328 1.00822 0.92849 1.22021 0.98089 0.93938 0.94635 1.21657 0.96682 1.00296 0.94372 1.21691 0.93264 0.90748 1.00946 1.20520 1.01717 1.01618 0.94860 1.21097 0.78697 0.76908 0.98114 1.92997 1.90491 1.38740 1.97714 1.92999 1.50512 1.95548 1.80821 1.20925 0.94959 0.96496 0.95400 1.22099 0.99937 0.98442 0.81125 1.22337 0.99938 0.94069 0.95465 0.87482 1.20916 0.94695 0.94777 0.85690 1.42776 1.14122 1.69346 1.14268 1.19028 0.96333 1.29157 0.92130 0.92779 1.25529 1.02637 1.01646 0.95779 1.69882 1.38657 1.48843 1.06106 0.85437 0.80755 0.78578 0.77249 1.21439 1.21692 1.16712 0.95688 0.89889 0.92697 0.87063 0.86724 0.81973 0.79904 0.80007 0.80602 0.88381 0.90711 0.94136 0.97056 0.94510 0.80166 0.93278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 7.97 71.98 0.57 -2.45 16 2 C -0.09 -1.49 3.60 -9.70 -0.03 -1.53 16 3 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 4 C 0.09 1.29 4.72 86.61 0.41 1.70 16 5 N -0.61 -15.83 3.19 -813.48 -2.60 -18.43 16 6 C 0.56 17.83 7.59 86.79 0.66 18.49 16 7 O -0.60 -25.75 17.17 -3.88 -0.07 -25.82 16 8 C -0.14 -3.31 5.60 -20.09 -0.11 -3.42 16 9 C -0.07 -0.82 7.77 22.53 0.17 -0.64 16 10 C -0.11 -0.62 10.03 22.23 0.22 -0.40 16 11 C -0.05 -0.32 9.66 22.33 0.22 -0.10 16 12 C -0.19 -2.90 5.37 -19.90 -0.11 -3.01 16 13 C 0.30 4.32 5.45 71.24 0.39 4.71 16 14 F -0.22 -4.55 17.25 44.97 0.78 -3.77 16 15 F -0.22 -4.51 17.26 44.97 0.78 -3.73 16 16 C -0.06 -1.43 9.15 22.53 0.21 -1.23 16 17 C 0.11 3.31 6.30 86.53 0.54 3.86 16 18 C -0.10 -2.61 2.99 -9.90 -0.03 -2.64 16 19 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 20 C 0.16 6.25 4.18 86.38 0.36 6.62 16 21 N -0.76 -36.64 5.14 -343.45 -1.76 -38.40 16 22 C -0.24 -14.05 10.47 84.04 0.88 -13.17 16 23 H 0.05 3.53 8.06 -2.91 -0.02 3.51 16 24 C -0.06 -3.97 5.50 84.86 0.47 -3.50 16 25 N -0.98 -65.50 13.97 21.65 0.30 -65.20 16 26 Si 0.95 47.40 27.74 68.60 1.90 49.30 16 27 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 28 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 29 H -0.24 -10.60 6.52 99.48 0.65 -9.95 16 30 H 0.02 0.67 7.61 -2.39 -0.02 0.65 16 31 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.05 1.30 6.68 -2.39 -0.02 1.28 16 33 H 0.11 1.09 5.50 -2.39 -0.01 1.08 16 34 H 0.11 0.88 8.05 -2.39 -0.02 0.86 16 35 H 0.16 1.10 5.72 -2.91 -0.02 1.09 16 36 H 0.18 -0.53 8.06 -2.92 -0.02 -0.55 16 37 H 0.18 -0.50 7.94 -2.91 -0.02 -0.52 16 38 H 0.18 0.45 7.87 -2.39 -0.02 0.43 16 39 H 0.10 3.05 7.99 -2.91 -0.02 3.03 16 40 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.04 1.66 7.52 -2.39 -0.02 1.64 16 42 H 0.01 0.48 6.86 -2.39 -0.02 0.47 16 43 H 0.04 1.37 7.56 -2.39 -0.02 1.35 16 44 H 0.37 16.74 5.37 -92.70 -0.50 16.24 16 45 H 0.26 16.33 8.31 -92.71 -0.77 15.56 16 Total: -1.00 -91.55 370.45 4.62 -86.93 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.47 Total: 15.83 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: 4.82 Total: 3.28 kcal Atomic # 7 Polarization: -117.97 SS G_CDS: -4.06 Total: -122.03 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.07 Total: -25.82 kcal Atomic # 9 Polarization: -9.05 SS G_CDS: 1.55 Total: -7.50 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 1.90 Total: 49.30 kcal Total: -91.55 4.62 -86.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754825701.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.747 kcal (2) G-P(sol) polarization free energy of solvation -91.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds