Wall clock time and date at job start Tue Mar 31 2020 21:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47559 * 2 1 4 4 C 1.50706 * 109.46956 * 119.99979 * 2 1 3 5 5 O 1.21274 * 120.00034 * 119.99919 * 4 2 1 6 6 N 1.34775 * 119.99541 * 299.99469 * 4 2 1 7 7 C 1.46506 * 119.99693 * 179.97438 * 6 4 2 8 8 H 1.08996 * 109.46660 * 35.00912 * 7 6 4 9 9 C 1.52997 * 109.47289 * 275.00198 * 7 6 4 10 10 C 1.52999 * 109.46684 * 155.00124 * 7 6 4 11 11 C 1.53945 * 113.74529 * 278.73866 * 10 7 6 12 12 N 1.47807 * 86.04084 * 222.08774 * 11 10 7 13 13 C 1.36936 * 134.45937 * 204.64279 * 12 11 10 14 14 H 1.08005 * 120.00346 * 179.86277 * 13 12 11 15 15 C 1.38811 * 119.99896 * 359.87268 * 13 12 11 16 16 N 1.31623 * 120.00001 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00199 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47031 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47325 * 119.99616 * 17 15 13 20 20 H 1.48504 * 109.47317 * 239.99651 * 17 15 13 21 21 C 1.47576 * 91.04962 * 24.54882 * 12 11 10 22 22 C 1.50706 * 109.47032 * 239.99552 * 2 1 3 23 23 C 1.38231 * 119.98619 * 300.00272 * 22 2 1 24 24 C 1.38186 * 120.04886 * 179.97438 * 23 22 2 25 25 C 1.38496 * 120.02200 * 359.97438 * 24 23 22 26 26 F 1.35107 * 120.00816 * 179.97438 * 25 24 23 27 27 C 1.38395 * 119.97727 * 0.02562 * 25 24 23 28 28 C 1.38444 * 119.95021 * 359.76041 * 27 25 24 29 29 F 1.35098 * 120.01237 * 180.23249 * 28 27 25 30 30 H 1.09002 * 109.46959 * 60.00173 * 1 2 3 31 31 H 1.08999 * 109.47559 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47335 * 300.00579 * 1 2 3 33 33 H 0.97000 * 120.00190 * 0.02562 * 6 4 2 34 34 H 1.09002 * 109.47153 * 179.97438 * 9 7 6 35 35 H 1.09001 * 109.46832 * 60.00146 * 9 7 6 36 36 H 1.09004 * 109.47261 * 300.00128 * 9 7 6 37 37 H 1.09002 * 112.94852 * 50.34103 * 10 7 6 38 38 H 1.08997 * 113.76654 * 336.35575 * 11 10 7 39 39 H 1.09002 * 113.76615 * 107.75050 * 11 10 7 40 40 H 0.96992 * 119.99763 * 180.02562 * 16 15 13 41 41 H 1.09006 * 113.77253 * 221.14869 * 21 12 11 42 42 H 1.09000 * 113.87108 * 89.76663 * 21 12 11 43 43 H 1.08000 * 119.97216 * 359.97323 * 23 22 2 44 44 H 1.07999 * 119.98649 * 179.97438 * 24 23 22 45 45 H 1.08008 * 120.02570 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1193 6 7 1.7067 -0.2498 2.4546 7 6 2.1945 -0.9408 3.6508 8 1 3.1936 -1.3332 3.4616 9 6 1.2499 -2.0942 3.9944 10 6 2.2462 0.0423 4.8220 11 6 3.5025 0.9321 4.8295 12 7 3.5411 0.6888 6.2868 13 6 4.0614 1.3640 7.3585 14 1 3.9502 0.9631 8.3552 15 6 4.7315 2.5640 7.1639 16 7 4.8672 3.0525 5.9492 17 14 5.4405 3.4856 8.6258 18 1 5.1543 2.7314 9.8726 19 1 6.9094 3.6257 8.4576 20 1 4.8212 4.8328 8.7095 21 6 2.7923 -0.5724 6.1235 22 6 2.0323 -0.7105 -1.2305 23 6 1.6981 -2.0339 -1.4488 24 6 2.1576 -2.6866 -2.5769 25 6 2.9531 -2.0150 -3.4903 26 9 3.4026 -2.6535 -4.5929 27 6 3.2882 -0.6900 -3.2726 28 6 2.8237 -0.0359 -2.1443 29 9 3.1463 1.2589 -1.9330 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.1488 0.5387 2.5435 34 1 1.6131 -2.6086 4.8842 35 1 1.2131 -2.7946 3.1600 36 1 0.2508 -1.7016 4.1837 37 1 1.3161 0.5951 4.9543 38 1 4.3472 0.5039 4.2900 39 1 3.3070 1.9704 4.5613 40 1 5.3357 3.8908 5.8133 41 1 2.0308 -0.7332 6.8868 42 1 3.4264 -1.4446 5.9651 43 1 1.0775 -2.5582 -0.7373 44 1 1.8962 -3.7207 -2.7463 45 1 3.9082 -0.1653 -3.9846 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755391001.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:07 Heat of formation + Delta-G solvation = -54.682537 kcal Electronic energy + Delta-G solvation = -29072.430834 eV Core-core repulsion = 24727.488231 eV Total energy + Delta-G solvation = -4344.942603 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.25368 -49.22838 -40.38588 -38.95317 -37.96010 -34.82438 -34.37767 -32.18454 -31.09254 -30.49589 -29.12287 -27.53315 -25.28530 -24.71814 -24.00263 -23.41790 -22.54208 -21.06320 -20.14448 -18.98636 -18.50110 -17.66511 -17.00722 -16.64919 -16.43836 -16.15888 -15.93918 -15.51793 -15.45700 -15.06530 -14.88934 -14.70556 -14.28644 -14.09430 -13.84440 -13.49938 -13.29038 -13.11414 -12.91129 -12.62817 -12.49406 -12.24179 -12.17800 -11.93280 -11.69062 -11.52738 -11.42333 -11.32476 -11.30363 -10.92016 -10.72800 -10.36411 -9.96819 -9.76256 -9.66372 -9.41185 -9.29847 -8.86437 -8.82525 -8.80291 -6.87758 -5.76947 -3.09213 0.66250 0.77801 2.69696 2.99372 3.36553 3.38624 3.43705 3.46313 3.60753 4.08236 4.19858 4.29337 4.44639 4.54710 4.70318 4.83819 4.88959 5.00204 5.10006 5.25759 5.27187 5.33252 5.47383 5.52504 5.53871 5.58521 5.63447 5.65163 5.73622 5.78916 5.83354 5.92646 5.99635 6.01484 6.22654 6.33615 6.38620 6.49088 6.57698 6.65136 6.78726 7.23027 7.35708 7.55594 7.63366 7.97918 8.31441 9.04524 9.70793 10.59872 11.40137 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017333 B = 0.002426 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.004815 B =11537.963374 C =12335.450975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.077 4.077 3 H 0.112 0.888 4 C 0.519 3.481 5 O -0.536 6.536 6 N -0.714 5.714 7 C 0.150 3.850 8 H 0.087 0.913 9 C -0.157 4.157 10 C -0.146 4.146 11 C 0.171 3.829 12 N -0.613 5.613 13 C -0.222 4.222 14 H 0.080 0.920 15 C -0.009 4.009 16 N -0.921 5.921 17 Si 0.911 3.089 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.290 1.290 21 C 0.130 3.870 22 C -0.106 4.106 23 C -0.027 4.027 24 C -0.164 4.164 25 C 0.127 3.873 26 F -0.134 7.134 27 C -0.194 4.194 28 C 0.138 3.862 29 F -0.127 7.127 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.400 0.600 34 H 0.066 0.934 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.088 0.912 38 H 0.025 0.975 39 H 0.071 0.929 40 H 0.253 0.747 41 H 0.044 0.956 42 H 0.034 0.966 43 H 0.141 0.859 44 H 0.142 0.858 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.982 -9.038 -18.477 23.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.098 4.098 3 H 0.130 0.870 4 C 0.304 3.696 5 O -0.413 6.413 6 N -0.364 5.364 7 C 0.046 3.954 8 H 0.105 0.895 9 C -0.215 4.215 10 C -0.166 4.166 11 C 0.045 3.955 12 N -0.339 5.339 13 C -0.350 4.350 14 H 0.098 0.902 15 C -0.206 4.206 16 N -0.568 5.568 17 Si 0.742 3.258 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.217 1.217 21 C 0.004 3.996 22 C -0.107 4.107 23 C -0.046 4.046 24 C -0.183 4.183 25 C 0.108 3.892 26 F -0.112 7.112 27 C -0.214 4.214 28 C 0.118 3.882 29 F -0.106 7.106 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.234 0.766 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.106 0.894 38 H 0.043 0.957 39 H 0.090 0.910 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.052 0.948 43 H 0.159 0.841 44 H 0.160 0.840 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -11.265 -9.457 -18.388 23.547 hybrid contribution 0.613 1.080 0.617 1.386 sum -10.652 -8.378 -17.772 22.349 Atomic orbital electron populations 1.21797 0.91408 1.03139 1.03336 1.20251 0.98128 1.01023 0.90395 0.86966 1.20226 0.80274 0.84640 0.84411 1.90709 1.37581 1.26380 1.86631 1.46061 1.53187 1.31770 1.05381 1.21105 0.98346 0.92451 0.83541 0.89494 1.22120 0.99563 0.98200 1.01648 1.23818 1.01036 0.97953 0.93835 1.22291 0.90435 0.97964 0.84775 1.46011 1.65297 1.19765 1.02842 1.19072 1.28870 1.01122 0.85916 0.90232 1.24790 1.00961 0.98074 0.96734 1.69826 1.46838 1.21079 1.19061 0.86058 0.78621 0.79663 0.81480 1.20473 1.21756 1.21715 1.22485 0.93452 0.90569 0.93138 1.19428 1.00238 0.95270 0.95813 1.20663 0.96576 0.92295 0.95019 1.21169 1.00601 1.01523 0.95013 1.17294 0.96976 0.90276 0.84688 1.91527 1.87403 1.81550 1.50752 1.20946 1.05949 0.94657 0.99845 1.17085 0.97197 0.79152 0.94768 1.91533 1.90875 1.33571 1.94598 0.91165 0.91685 0.91081 0.76592 0.91463 0.92844 0.92738 0.89409 0.95672 0.91044 0.93724 0.93787 0.94810 0.84097 0.84027 0.83441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 8.90 37.16 0.33 -0.64 16 2 C -0.08 -0.77 2.88 -92.92 -0.27 -1.04 16 3 H 0.11 1.11 7.12 -51.93 -0.37 0.74 16 4 C 0.52 6.78 6.99 -10.98 -0.08 6.70 16 5 O -0.54 -8.82 14.77 5.56 0.08 -8.74 16 6 N -0.71 -8.91 4.97 -53.80 -0.27 -9.17 16 7 C 0.15 2.20 2.38 -67.93 -0.16 2.04 16 8 H 0.09 1.51 7.41 -51.93 -0.39 1.13 16 9 C -0.16 -1.94 9.31 37.16 0.35 -1.60 16 10 C -0.15 -2.53 3.47 -89.69 -0.31 -2.84 16 11 C 0.17 3.93 7.08 -2.84 -0.02 3.91 16 12 N -0.61 -15.64 3.70 -177.69 -0.66 -16.29 16 13 C -0.22 -6.25 10.70 -15.06 -0.16 -6.41 16 14 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 15 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 16 N -0.92 -27.36 11.39 55.49 0.63 -26.73 16 17 Si 0.91 22.21 29.55 -169.99 -5.02 17.18 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 C 0.13 2.57 7.64 -2.97 -0.02 2.55 16 22 C -0.11 -1.14 4.40 -104.54 -0.46 -1.60 16 23 C -0.03 -0.27 7.92 -39.60 -0.31 -0.58 16 24 C -0.16 -1.49 10.03 -39.51 -0.40 -1.89 16 25 C 0.13 1.27 7.30 -39.43 -0.29 0.98 16 26 F -0.13 -1.37 17.27 2.25 0.04 -1.33 16 27 C -0.19 -1.95 10.01 -39.45 -0.39 -2.35 16 28 C 0.14 1.53 7.24 -39.43 -0.29 1.24 16 29 F -0.13 -1.51 16.19 2.25 0.04 -1.47 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.43 7.39 -51.93 -0.38 0.04 16 32 H 0.07 0.42 7.56 -51.93 -0.39 0.03 16 33 H 0.40 4.13 8.02 -40.82 -0.33 3.80 16 34 H 0.07 0.82 7.52 -51.93 -0.39 0.43 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.03 0.62 7.99 -51.93 -0.41 0.21 16 39 H 0.07 1.81 7.17 -51.93 -0.37 1.44 16 40 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 41 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.03 0.66 8.10 -51.93 -0.42 0.24 16 43 H 0.14 1.22 7.51 -52.49 -0.39 0.83 16 44 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 45 H 0.15 1.23 8.06 -52.48 -0.42 0.81 16 LS Contribution 379.68 15.07 5.72 5.72 Total: -1.00 -33.16 379.68 -8.37 -41.53 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -6.36 Total: 1.19 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -2.58 Total: -1.88 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: -0.29 Total: -52.20 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.08 Total: -8.74 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.08 Total: -2.80 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.16 -8.37 -41.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755391001.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.153 kcal (2) G-P(sol) polarization free energy of solvation -33.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds